Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 9.2e-51 203.4 111 100.0
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 9.2e-51 203.4 111 100.0
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 9.2e-51 203.4 111 100.0
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 7.3e-48 193.7 110 95.5
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 1.4e-46 189.5 110 93.6
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 4.0e-46 188.0 111 92.8
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 9.0e-46 186.8 111 92.8
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 9.0e-46 186.8 111 91.0
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 9.0e-46 186.8 111 90.1
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 1.2e-45 186.4 111 91.9
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 2.6e-45 185.3 111 91.0
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 2.6e-45 185.3 111 91.0
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 2.6e-45 185.3 111 91.0
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 3.4e-45 184.9 111 91.0
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 7.6e-45 183.7 111 91.9
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 7.6e-45 183.7 111 91.9
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 7.6e-45 183.7 111 90.1
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 7.6e-45 183.7 111 89.2
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 7.6e-45 183.7 112 92.0
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 9.9e-45 183.3 111 89.2
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 1.7e-44 182.6 111 90.1
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 1.7e-44 182.6 111 90.1
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 2.2e-44 182.2 111 91.0
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 2.9e-44 181.8 111 88.3
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 2.9e-44 181.8 111 90.1
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 4.9e-44 181.0 111 89.2
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 4.9e-44 181.0 112 88.4
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 6.4e-44 180.6 111 89.2
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 6.4e-44 180.6 112 89.3
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 1.1e-43 179.9 111 90.1
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 1.9e-43 179.1 112 90.2
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 1.9e-43 179.1 111 89.2
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 2.4e-43 178.7 111 89.2
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 2.4e-43 178.7 111 89.2
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 3.2e-43 178.3 111 87.4
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 3.2e-43 178.3 111 87.4
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 3.2e-43 178.3 112 87.5
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 5.4e-43 177.6 111 87.4
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 5.4e-43 177.6 111 88.3
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 7.1e-43 177.2 111 88.3
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 7.1e-43 177.2 111 87.4
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 7.1e-43 177.2 111 88.3
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 9.3e-43 176.8 112 89.3
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 1.2e-42 176.4 111 86.5
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 1.2e-42 176.4 111 86.5
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 1.2e-42 176.4 111 86.5
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 1.2e-42 176.4 104 92.3
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.6e-42 176.0 111 86.5
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 1.6e-42 176.0 111 86.5
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 1.6e-42 176.0 111 87.4
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 1.6e-42 176.0 111 87.4
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 2.7e-42 175.3 111 85.6
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 2.7e-42 175.3 111 83.8
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 4.6e-42 174.5 112 86.6
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 4.6e-42 174.5 109 88.1
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 4.6e-42 174.5 111 85.6
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 6.0e-42 174.1 111 85.6
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 7.8e-42 173.7 111 85.6
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 1.0e-41 173.3 111 85.6
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 1.0e-41 173.3 111 85.6
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 1.0e-41 173.3 110 90.9
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.3e-41 172.9 111 85.6
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 1.3e-41 172.9 111 87.4
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 1.7e-41 172.6 109 83.5
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 2.3e-41 172.2 111 87.4
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 2.3e-41 172.2 112 87.5
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 2.3e-41 172.2 112 86.6
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 2.3e-41 172.2 111 84.7
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 3.0e-41 171.8 111 83.8
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 3.0e-41 171.8 112 86.6
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 5.1e-41 171.0 111 86.5
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 6.6e-41 170.6 111 83.8
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 6.6e-41 170.6 108 88.9
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 1.9e-40 169.1 112 83.9
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 1.9e-40 169.1 112 83.9
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 3.3e-40 168.3 133 74.4
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 4.3e-40 167.9 99 92.9
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 9.6e-40 166.8 127 76.4
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 9.6e-40 166.8 111 82.9
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 9.6e-40 166.8 112 83.9
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 1.3e-39 166.4 113 83.2
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 1.6e-39 166.0 112 83.9
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 1.6e-39 166.0 112 83.9
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 1.6e-39 166.0 112 83.9
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 4.8e-39 164.5 112 83.9
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 8.1e-39 163.7 112 84.8
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 8.1e-39 163.7 111 81.1
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 1.1e-38 163.3 105 80.0
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 1.8e-38 162.5 110 82.7
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 4.0e-38 161.4 112 84.8
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 5.3e-38 161.0 112 82.1
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 6.9e-38 160.6 110 80.9
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 6.9e-38 160.6 110 80.9
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 6.9e-38 160.6 110 80.9
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 6.9e-38 160.6 110 80.9
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 9.0e-38 160.2 110 80.9
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 1.2e-37 159.8 111 80.2
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 2.0e-37 159.1 99 88.9
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 3.4e-37 158.3 103 82.5
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 3.4e-37 158.3 100 85.0
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 4.5e-37 157.9 111 80.2
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 5.8e-37 157.5 110 80.0
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 5.8e-37 157.5 110 79.1
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 5.8e-37 157.5 106 83.0
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 7.6e-37 157.1 110 80.0
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 9.9e-37 156.8 110 78.2
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 2.2e-36 155.6 111 80.2
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 2.2e-36 155.6 110 78.2
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 2.9e-36 155.2 111 77.5
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 3.8e-36 154.8 110 78.2
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 4.9e-36 154.5 110 78.2
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 6.4e-36 154.1 113 77.0
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 1.4e-35 152.9 110 78.2
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.9e-35 152.5 111 75.7
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 3.2e-35 151.8 110 77.3
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 5.4e-35 151.0 111 74.8
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 5.4e-35 151.0 112 81.2
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 1.2e-34 149.8 97 82.5
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 1.2e-34 149.8 110 76.4
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 6.0e-34 147.5 182 56.0
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 7.9e-34 147.1 111 74.8
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 7.9e-34 147.1 105 74.3
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 2.3e-33 145.6 97 84.5
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 3.0e-33 145.2 112 72.3
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 1.5e-32 142.9 112 74.1
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 9.6e-32 140.2 101 75.2
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 6.2e-31 137.5 111 73.0
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 9.0e-30 133.7 83 90.4
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 2.6e-29 132.1 85 82.4
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 3.4e-29 131.7 111 71.2
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 1.3e-28 129.8 96 72.9
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 1.9e-24 115.9 107 64.5
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 2.8e-23 112.1 68 89.7
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 4.8e-23 111.3 110 62.7
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 6.5e-20 100.9 62 87.1
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 4.6e-18 94.7 59 89.8
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 6.0e-18 94.4 53 92.5
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 4.3e-16 88.2 50 94.0
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 1.1e-14 83.6 92 55.4
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 4.1e-14 81.6 57 77.2
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 1.2e-13 80.1 109 47.7
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 2.0e-13 79.3 62 72.6
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 5.9e-13 77.8 62 71.0
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 2.2e-12 75.9 53 77.4
Cre01.g041000 Chlamydomonas reinhardtii HOM05D005046 ORTHO05D006194 5.7e-08 61.2 110 40.0
MCO05G089 Micromonas commoda HOM05D005046 ORTHO05D006194 4.1e-06 55.1 63 52.4


User provided reference genes

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