Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039414 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 9.3e-65 250.0 120 100.0
CSS0047181 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 9.3e-65 250.0 120 100.0
Hma1.2p1_0307F.1_g119895 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 2.5e-62 241.9 120 95.0
CiPaw.11G096400 Carya illinoinensis HOM05D004197 ORTHO05D004975 6.2e-61 237.3 120 91.7
Gohir.A10G143100 Gossypium hirsutum HOM05D004197 ORTHO05D004975 4.0e-60 234.6 120 91.7
Gorai.011G136700 Gossypium raimondii HOM05D004197 ORTHO05D004975 4.0e-60 234.6 120 91.7
Gorai.012G053000 Gossypium raimondii HOM05D004197 ORTHO05D004975 4.0e-60 234.6 120 91.7
Rhsim03G0176800 Rhododendron simsii HOM05D004197 ORTHO05D004975 4.0e-60 234.6 119 91.6
Thecc.04G166300 Theobroma cacao HOM05D004197 ORTHO05D004975 4.0e-60 234.6 120 90.8
Duzib151G0052 Durio zibethinus HOM05D004197 ORTHO05D004975 1.2e-59 233.0 120 90.0
Gohir.A05G367700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.2e-59 233.0 120 90.8
Gohir.D10G123800 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.5e-59 232.6 120 90.8
Atru.chr12.1293 Acer truncatum HOM05D004197 ORTHO05D004975 2.0e-59 232.3 120 88.3
Cpa.g.sc10.180 Carica papaya HOM05D004197 ORTHO05D004975 2.0e-59 232.3 120 89.2
Gohir.D04G047600 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.0e-59 232.3 120 90.8
Nn1g09691 Nelumbo nucifera HOM05D004197 ORTHO05D004975 2.0e-59 232.3 120 90.0
TWI32G1250 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 2.6e-59 231.9 120 89.2
Eucgr.G02225 Eucalyptus grandis HOM05D004197 ORTHO05D004975 4.5e-59 231.1 120 90.8
Duzib212G0574 Durio zibethinus HOM05D004197 ORTHO05D004975 5.8e-59 230.7 120 90.0
Atru.chr4.2919 Acer truncatum HOM05D004197 ORTHO05D004975 2.2e-58 228.8 120 85.8
Dinv33200 Davidia involucrata HOM05D004197 ORTHO05D004975 4.9e-58 227.6 119 87.4
Cfa015042 Carpinus fangiana HOM05D004197 ORTHO05D004975 6.5e-58 227.3 120 88.3
Glyma.17G164900 Glycine max HOM05D004197 ORTHO05D004975 6.5e-58 227.3 120 88.3
Lalb_Chr04g0253841 Lupinus albus HOM05D004197 ORTHO05D004975 8.4e-58 226.9 120 88.3
Phvul.003G238300 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 8.4e-58 226.9 120 87.5
Lj1g0017974 Lotus japonicus HOM05D004197 ORTHO05D004975 1.4e-57 226.1 120 87.5
VMungo0251G3068 Vigna mungo HOM05D004197 ORTHO05D004975 1.9e-57 225.7 120 87.5
CiPaw.12G066300 Carya illinoinensis HOM05D004197 ORTHO05D004975 3.2e-57 224.9 120 85.0
QL10p055721 Quercus lobata HOM05D004197 ORTHO05D004975 4.2e-57 224.6 119 87.4
GSVIVG01038138001 Vitis vinifera HOM05D004197 ORTHO05D004975 4.2e-57 224.6 120 86.7
Glyma.05G102000 Glycine max HOM05D004197 ORTHO05D004975 5.5e-57 224.2 120 88.3
Lalb_Chr10g0101191 Lupinus albus HOM05D004197 ORTHO05D004975 9.3e-57 223.4 120 85.8
PGR142G4086 Punica granatum HOM05D004197 ORTHO05D004975 1.2e-56 223.0 120 86.7
arahy.Tifrunner.gnm1.ann1.4JR04K Arachis hypogaea HOM05D004197 ORTHO05D004975 1.6e-56 222.6 120 85.8
arahy.Tifrunner.gnm1.ann1.5DCW4K Arachis hypogaea HOM05D004197 ORTHO05D004975 1.6e-56 222.6 120 85.8
arahy.Tifrunner.gnm1.ann1.E9H45Q Arachis hypogaea HOM05D004197 ORTHO05D004975 2.1e-56 222.2 119 85.7
Os03g0207250 Oryza sativa ssp. japonica HOM05D004197 ORTHO05D004975 2.1e-56 222.2 120 85.8
Sed0002539 Sechium edule HOM05D004197 ORTHO05D004975 2.1e-56 222.2 120 88.3
EL10Ac6g15364 Beta vulgaris HOM05D004197 ORTHO05D004975 2.7e-56 221.9 120 85.8
CDE02G1869 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 2.7e-56 221.9 119 84.0
AUR62023799 Chenopodium quinoa HOM05D004197 ORTHO05D004975 2.7e-56 221.9 120 83.3
Ca_10539_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 2.7e-56 221.9 120 85.0
ATR0733G162 Amborella trichopoda HOM05D004197 ORTHO05D004975 6.0e-56 220.7 120 84.2
Ciclev10022904m.g Citrus clementina HOM05D004197 ORTHO05D004975 6.0e-56 220.7 120 85.0
Ca_23424_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 7.9e-56 220.3 120 85.0
HPP92_007604 Vanilla planifolia HOM05D004197 ORTHO05D004975 7.9e-56 220.3 120 82.5
Aa31LG10G13940 Aethionema arabicum HOM05D004197 ORTHO05D004975 1.0e-55 219.9 120 84.2
Ah.13g073520 Amaranthus hybridus HOM05D004197 ORTHO05D004975 1.0e-55 219.9 120 82.5
Psat1g223520 Pisum sativum HOM05D004197 ORTHO05D004975 1.0e-55 219.9 120 84.2
TAR362G0244 Trochodendron aralioides HOM05D000090 ORTHO05D001584 1.0e-55 219.9 111 93.7
CARHR170020 Cardamine hirsuta HOM05D004197 ORTHO05D004975 1.3e-55 219.5 120 84.2
AL5G41720 Arabidopsis lyrata HOM05D004197 ORTHO05D004975 1.8e-55 219.2 120 84.2
Carub.0005s2637 Capsella rubella HOM05D004197 ORTHO05D004975 1.8e-55 219.2 120 84.2
AT3G59650 Arabidopsis thaliana HOM05D004197 ORTHO05D004975 2.3e-55 218.8 120 83.3
ClCG07G015230 Citrullus lanatus HOM05D004197 ORTHO05D004975 3.0e-55 218.4 120 85.8
Manes.06G021100 Manihot esculenta HOM05D004197 ORTHO05D004975 3.0e-55 218.4 120 84.2
Hund04335 Selenicereus undatus HOM05D004197 ORTHO05D004975 3.0e-55 218.4 120 84.2
TWI34G1638 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 3.0e-55 218.4 144 75.0
Prupe.1G206900 Prunus persica HOM05D004197 ORTHO05D004975 6.7e-55 217.2 120 84.2
Medtr8g022770 Medicago truncatula HOM05D004197 ORTHO05D004975 8.7e-55 216.9 120 84.2
Phvul.010G124900 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 1.1e-54 216.5 111 91.9
Zm00001eb400580 Zea mays HOM05D004197 ORTHO05D004975 1.1e-54 216.5 120 84.2
FvH4_7g06200 Fragaria vesca HOM05D004197 ORTHO05D004975 1.5e-54 216.1 120 83.3
RcHm_v2.0_Chr1g0333831 Rosa chinensis HOM05D004197 ORTHO05D004975 1.5e-54 216.1 120 84.2
Aqoxy7G00569 Aquilegia oxysepala HOM05D004197 ORTHO05D004975 1.9e-54 215.7 120 83.3
BcaC07g40496 Brassica carinata HOM05D004197 ORTHO05D004975 1.9e-54 215.7 120 83.3
A09p51920 Brassica napus HOM05D004197 ORTHO05D004975 1.9e-54 215.7 120 83.3
C08p34650 Brassica napus HOM05D004197 ORTHO05D004975 1.9e-54 215.7 120 83.3
BolC8t51067H Brassica oleracea HOM05D004197 ORTHO05D004975 1.9e-54 215.7 120 83.3
BraA09t40628Z Brassica rapa HOM05D004197 ORTHO05D004975 1.9e-54 215.7 120 83.3
EL10Ac3g06082 Beta vulgaris HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 82.5
BcaC08g44998 Brassica carinata HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 83.3
A07p24720 Brassica napus HOM05D000455 ORTHO05D000434 2.5e-54 215.3 120 83.3
C06p26290 Brassica napus HOM05D000455 ORTHO05D000434 2.5e-54 215.3 120 83.3
BolC6t37793H Brassica oleracea HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 83.3
BraA07t30117Z Brassica rapa HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 83.3
Oeu016610.1 Olea europaea HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 84.2
Sp5g03530 Schrenkiella parvula HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 83.3
BcaB02g07455 Brassica carinata HOM05D004197 ORTHO05D004975 3.3e-54 214.9 120 83.3
Thhalv10006316m.g Eutrema salsugineum HOM05D004197 ORTHO05D004975 3.3e-54 214.9 120 82.5
PSO832G1844 Papaver somniferum HOM05D004197 ORTHO05D004975 3.3e-54 214.9 119 83.2
TAR629G0957 Trochodendron aralioides HOM05D004197 ORTHO05D004975 3.3e-54 214.9 110 93.6
Cc02_g26370 Coffea canephora HOM05D004197 ORTHO05D004975 4.3e-54 214.5 120 84.2
FAN01G1948 Fragaria x ananassa HOM05D004197 ORTHO05D004975 4.3e-54 214.5 120 82.5
FAN06G1493 Fragaria x ananassa HOM05D004197 ORTHO05D004975 4.3e-54 214.5 120 82.5
Potri.013G126200 Populus trichocarpa HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 81.7
Psat4g166320 Pisum sativum HOM05D004197 ORTHO05D004975 7.4e-54 213.8 120 80.8
THA.LOC104804007 Tarenaya hassleriana HOM05D004197 ORTHO05D004975 7.4e-54 213.8 120 81.7
MSTRG.27564 Avicennia marina HOM05D004197 ORTHO05D004975 9.7e-54 213.4 120 84.2
FAN03G3355 Fragaria x ananassa HOM05D004197 ORTHO05D004975 9.7e-54 213.4 120 81.7
TPR.G16667 Trifolium pratense HOM05D004197 ORTHO05D004975 9.7e-54 213.4 119 82.4
MELO3C017759.2 Cucumis melo HOM05D004197 ORTHO05D004975 2.8e-53 211.8 120 82.5
CsaV3_4G002820 Cucumis sativus L. HOM05D004197 ORTHO05D004975 2.8e-53 211.8 120 81.7
PSO017G5565 Papaver somniferum HOM05D004197 ORTHO05D004975 3.7e-53 211.5 119 81.5
PSO675G0737 Papaver somniferum HOM05D004197 ORTHO05D004975 3.7e-53 211.5 119 81.5
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 8.2e-53 210.3 110 89.1
Lsat_1_v5_gn_6_33001 Lactuca sativa HOM05D004197 ORTHO05D004975 8.2e-53 210.3 120 82.5
CANSAT80G2644 Cannabis sativa HOM05D004197 ORTHO05D004975 1.8e-52 209.1 120 80.8
ECA240G1468 Erigeron canadensis HOM05D004197 ORTHO05D004975 1.8e-52 209.1 120 80.0
PSO591G0183 Papaver somniferum HOM05D004197 ORTHO05D004975 3.1e-52 208.4 119 79.8
QL04p073242 Quercus lobata HOM05D004197 ORTHO05D004975 4.1e-52 208.0 119 79.0
HanXRQChr10g0286001 Helianthus annuus HOM05D004197 ORTHO05D004975 5.3e-52 207.6 120 80.8
Peaxi162Scf00196g00222 Petunia axillaris HOM05D004197 ORTHO05D004975 9.0e-52 206.8 120 80.0
Sp2g07880 Schrenkiella parvula HOM05D004197 ORTHO05D004975 1.2e-51 206.5 120 80.0
Cc03_g14030 Coffea canephora HOM05D004197 ORTHO05D004975 1.5e-51 206.1 120 82.5
MD08G1230600 Malus domestica HOM05D004197 ORTHO05D004975 1.5e-51 206.1 117 80.3
CAN.G525.23 Capsicum annuum HOM05D004197 ORTHO05D004975 2.0e-51 205.7 120 80.0
Migut.F01587 Erythranthe guttata HOM05D004197 ORTHO05D004975 2.6e-51 205.3 120 79.2
Nitab4.5_0007872g0010 Nicotiana tabacum HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 79.2
SalBow6G6028 Salvia bowleyana HOM05D004197 ORTHO05D004975 5.9e-51 204.1 118 78.8
ECA247G1539 Erigeron canadensis HOM05D004197 ORTHO05D004975 7.7e-51 203.8 120 79.2
Lsat_1_v5_gn_5_190681 Lactuca sativa HOM05D004197 ORTHO05D004975 1.0e-50 203.4 120 80.0
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 1.3e-50 203.0 110 84.5
Nitab4.5_0000902g0310 Nicotiana tabacum HOM05D004197 ORTHO05D004975 1.7e-50 202.6 120 78.3
Solyc04g014390.3 Solanum lycopersicum HOM05D004197 ORTHO05D004975 5.0e-50 201.1 120 78.3
Sopen04g006520 Solanum pennellii HOM05D004197 ORTHO05D004975 5.0e-50 201.1 120 78.3
unitig_899.g14470 Utricularia gibba HOM05D004197 ORTHO05D004975 5.5e-49 197.6 120 76.7
PGSC0003DMG401023624 Solanum tuberosum HOM05D004197 ORTHO05D004975 7.2e-49 197.2 120 77.5
TAR493G0004 Trochodendron aralioides HOM05D004197 ORTHO05D004975 3.6e-48 194.9 107 89.7
FAN24G1973 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.5e-46 188.7 110 80.0
FvH4_2g13530 Fragaria vesca HOM05D004197 ORTHO05D004975 4.3e-46 188.0 112 79.5
QL04p093649 Quercus lobata HOM05D004197 ORTHO05D004975 5.7e-46 187.6 111 76.6
SGA_v2.0_scaffold49G18240 Striga asiatica HOM05D004197 ORTHO05D004975 8.2e-45 183.7 110 80.9
Gorai.004G083000 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.4e-44 182.2 95 90.5
arahy.Tifrunner.gnm1.ann1.XY21PC Arachis hypogaea HOM05D004197 ORTHO05D004975 1.2e-43 179.9 131 67.2
Lj3g0000340 Lotus japonicus HOM05D004197 ORTHO05D004975 1.5e-43 179.5 124 73.4
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 2.6e-43 178.7 95 86.3
AUR62002389 Chenopodium quinoa HOM05D004197 ORTHO05D004975 7.7e-43 177.2 213 46.0
Mapoly0027s0066 Marchantia polymorpha HOM05D004197 ORTHO05D004975 5.0e-42 174.5 120 68.3
SEGI_18755 Sequoiadendron giganteum HOM05D004197 ORTHO05D004975 8.5e-42 173.7 120 65.0
Gohir.D08G078000 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.1e-41 173.3 93 88.2
Gohir.D10G075200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.4e-41 172.9 91 89.0
Atru.chr12.1301 Acer truncatum HOM05D004197 ORTHO05D004975 2.5e-41 172.2 91 86.8
Atru.chr12.1273 Acer truncatum HOM05D004197 ORTHO05D004975 7.2e-41 170.6 93 84.9
Gohir.D02G135200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 9.4e-41 170.2 91 87.9
Gorai.011G081000 Gossypium raimondii HOM05D004197 ORTHO05D004975 4.7e-40 167.9 91 87.9
Gorai.005G151300 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.0e-39 166.8 91 85.7
Rhsim02G0084000 Rhododendron simsii HOM05D004197 ORTHO05D004975 1.4e-39 166.4 86 89.5
C04p24770 Brassica napus HOM05D004197 ORTHO05D004975 1.8e-39 166.0 110 74.5
BolC4t23981H Brassica oleracea HOM05D004197 ORTHO05D004975 1.8e-39 166.0 110 74.5
Pp3c1_20100 Physcomitrium patens HOM05D004197 ORTHO05D004975 6.7e-39 164.1 120 65.0
BcaC02g10824 Brassica carinata HOM05D004197 ORTHO05D004975 1.5e-38 162.9 110 73.6
Sabra13G0105500 Salix brachista HOM05D004197 ORTHO05D004975 2.6e-38 162.2 169 52.7
arahy.Tifrunner.gnm1.ann1.60591L Arachis hypogaea HOM05D004197 ORTHO05D004975 7.4e-38 160.6 136 64.0
Zm00001eb007240 Zea mays HOM05D004197 ORTHO05D004975 1.3e-37 159.8 91 82.4
SHI24203 Sapria himalayana HOM05D004197 ORTHO05D004975 4.8e-37 157.9 133 57.1
HanXRQChr09g0264591 Helianthus annuus HOM05D004197 ORTHO05D004975 8.2e-37 157.1 94 77.7
Peaxi162Scf00474g00723 Petunia axillaris HOM05D004197 ORTHO05D004975 1.3e-34 149.8 120 63.3
DCAR_029674 Daucus carota HOM05D004197 ORTHO05D004975 8.5e-34 147.1 91 73.6
Gohir.D08G220700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 8.5e-34 147.1 77 89.6
DCAR_009572 Daucus carota HOM05D004197 ORTHO05D004975 4.2e-33 144.8 91 72.5
SalBow2G3321 Salvia bowleyana HOM05D004197 ORTHO05D004975 5.5e-33 144.4 89 76.4
TPR.G31074 Trifolium pratense HOM05D004197 ORTHO05D006502 7.2e-33 144.1 94 72.3
CARHR099320 Cardamine hirsuta HOM05D004197 ORTHO05D004975 3.6e-32 141.7 83 77.1
Hma1.2p1_0150F.1_g066800 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 7.4e-30 134.0 62 98.4
unitig_736.g22525 Utricularia gibba HOM05D000398 ORTHO05D000551 9.7e-30 133.7 86 68.6
vmacro16589 Vaccinium macrocarpon HOM05D004197 ORTHO05D004975 2.8e-29 132.1 62 96.8
COL.COLO4_08144 Corchorus olitorius HOM05D004197 ORTHO05D004975 1.8e-28 129.4 62 93.5
SMO347G0376 Selaginella moellendorffii HOM05D004197 ORTHO05D004975 7.0e-28 127.5 118 50.0
Lsat_1_v5_gn_6_23540 Lactuca sativa HOM05D004197 ORTHO05D004975 2.0e-27 125.9 95 66.3
arahy.Tifrunner.gnm1.ann1.GGUP18 Arachis hypogaea HOM05D004197 ORTHO05D004975 2.6e-27 125.6 62 91.9
Glyma.07G044001 Glycine max HOM05D004197 ORTHO05D004975 5.0e-26 121.3 91 69.2
Gorai.004G076200 Gossypium raimondii HOM05D004197 ORTHO05D004975 3.2e-25 118.6 120 54.2
Cre06.g270650 Chlamydomonas reinhardtii HOM05D004197 ORTHO05D004975 7.5e-22 107.5 110 45.5
arahy.Tifrunner.gnm1.ann1.HJ8Q1I Arachis hypogaea HOM05D004197 ORTHO05D004975 2.4e-20 102.4 57 80.7
Lsat_1_v5_gn_2_131080 Lactuca sativa HOM05D004197 ORTHO05D004975 2.7e-19 99.0 82 63.4
Gohir.D04G172540 Gossypium hirsutum HOM05D004197 ORTHO05D004975 6.5e-18 94.4 61 73.8
MCO09G643 Micromonas commoda HOM05D004197 ORTHO05D004975 1.5e-17 93.2 115 41.7
Gorai.012G161800 Gossypium raimondii HOM05D004197 ORTHO05D004975 3.2e-17 92.0 61 72.1
Gorai.004G234500 Gossypium raimondii HOM05D004197 ORTHO05D004975 6.1e-16 87.8 57 73.7
Actinidia27110 Actinidia chinensis HOM05D004197 ORTHO05D004975 1.7e-13 79.7 44 84.1
Thecc.10G088100 Theobroma cacao HOM05D004197 ORTHO05D004975 1.2e-06 57.0 35 71.4


User provided reference genes

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