Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039402 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D002159 7.6e-64 246.9 115 100.0
CSS0008347 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D002159 6.4e-63 243.8 115 99.1
CSS0029625 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D002159 9.3e-30 133.7 106 63.2
CSS0041280 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D002159 4.6e-29 131.3 106 62.3
Actinidia20687 Actinidia chinensis HOM05D000367 ORTHO05D002159 2.3e-28 129.0 106 61.3
CSS0041953 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D002159 6.7e-28 127.5 106 61.3
Actinidia28305 Actinidia chinensis HOM05D000367 ORTHO05D002159 8.7e-28 127.1 106 60.4
CSS0050221 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D002159 1.9e-27 125.9 106 60.4
CSS0002837 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D002159 1.3e-26 123.2 106 58.5
vmacro13646 Vaccinium macrocarpon HOM05D000367 ORTHO05D002159 1.4e-25 119.8 106 56.6
Rhsim07G0053700 Rhododendron simsii HOM05D000367 ORTHO05D002159 6.5e-23 110.9 106 54.7
Lsat_1_v5_gn_4_46221 Lactuca sativa HOM05D000367 ORTHO05D002159 3.0e-20 102.1 106 46.2
CSS0037208 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D002159 5.1e-20 101.3 64 70.3
Nn3g21316 Nelumbo nucifera HOM05D000367 ORTHO05D002159 5.1e-20 101.3 106 48.1
ClCG09G003900 Citrullus lanatus HOM05D000367 ORTHO05D002159 8.7e-20 100.5 106 49.1
Nn4g26001 Nelumbo nucifera HOM05D000367 ORTHO05D002159 1.9e-19 99.4 106 48.1
TAR369G0787 Trochodendron aralioides HOM05D000367 ORTHO05D002159 1.9e-19 99.4 106 48.1
MELO3C023526.2 Cucumis melo HOM05D000367 ORTHO05D002159 3.3e-19 98.6 106 47.2
PSO675G1741 Papaver somniferum HOM05D000367 ORTHO05D002159 3.3e-19 98.6 106 45.3
PSO339G6027 Papaver somniferum HOM05D000367 ORTHO05D002159 5.7e-19 97.8 105 45.7
HanXRQChr17g0563481 Helianthus annuus HOM05D000367 ORTHO05D002159 7.4e-19 97.4 106 43.4
ECA234G3345 Erigeron canadensis HOM05D000367 ORTHO05D002159 1.3e-18 96.7 106 43.4
TAR623G0541 Trochodendron aralioides HOM05D000367 ORTHO05D002159 1.3e-18 96.7 106 46.2
GSVIVG01032045001 Vitis vinifera HOM05D000367 ORTHO05D002159 1.3e-18 96.7 106 45.3
HanXRQChr04g0117371 Helianthus annuus HOM05D000367 ORTHO05D002159 1.6e-18 96.3 106 44.3
arahy.Tifrunner.gnm1.ann1.U3IRLW Arachis hypogaea HOM05D000367 ORTHO05D002159 2.2e-18 95.9 119 49.6
Lsat_1_v5_gn_7_36181 Lactuca sativa HOM05D000367 ORTHO05D002159 2.2e-18 95.9 106 44.3
ATR0620G062 Amborella trichopoda HOM05D000367 ORTHO05D002159 2.8e-18 95.5 105 45.7
HPP92_008358 Vanilla planifolia HOM05D000367 ORTHO05D002159 2.8e-18 95.5 106 46.2
DCAR_029634 Daucus carota HOM05D000367 ORTHO05D002159 4.8e-18 94.7 106 44.3
ATR0810G214 Amborella trichopoda HOM05D000367 ORTHO05D002159 8.2e-18 94.0 105 44.8
Phvul.011G214000 Phaseolus vulgaris HOM05D000367 ORTHO05D002159 8.2e-18 94.0 106 45.3
Sed0026143 Sechium edule HOM05D000367 ORTHO05D002159 8.2e-18 94.0 106 45.3
VMungo1127G0263 Vigna mungo HOM05D000367 ORTHO05D002159 8.2e-18 94.0 106 45.3
CsaV3_7G031320 Cucumis sativus L. HOM05D000367 ORTHO05D002159 1.1e-17 93.6 106 46.2
CDE02G4723 Ceratophyllum demersum HOM05D000367 ORTHO05D002159 2.4e-17 92.4 106 44.3
arahy.Tifrunner.gnm1.ann1.A4UTJD Arachis hypogaea HOM05D000367 ORTHO05D002159 3.1e-17 92.0 106 45.3
ECA236G3999 Erigeron canadensis HOM05D000367 ORTHO05D002159 4.1e-17 91.7 106 43.4
PSO384G2829 Papaver somniferum HOM05D000367 ORTHO05D002159 4.1e-17 91.7 105 43.8
vmacro01203 Vaccinium macrocarpon HOM05D000367 ORTHO05D002159 4.1e-17 91.7 92 51.1
CDE08G0747 Ceratophyllum demersum HOM05D000367 ORTHO05D002159 6.9e-17 90.9 106 43.4
Ca_19893_v3 Cicer arietinum L. HOM05D000367 ORTHO05D002159 6.9e-17 90.9 104 45.2
Glyma.08G152100 Glycine max HOM05D000367 ORTHO05D002159 9.0e-17 90.5 105 44.8
PSO541G2823 Papaver somniferum HOM05D000367 ORTHO05D002159 9.0e-17 90.5 106 42.5
Dinv43905 Davidia involucrata HOM05D000367 ORTHO05D002159 1.2e-16 90.1 106 43.4
Glyma.12G239500 Glycine max HOM05D000367 ORTHO05D002159 1.2e-16 90.1 106 43.4
Lalb_Chr20g0108121 Lupinus albus HOM05D000367 ORTHO05D002159 1.2e-16 90.1 106 42.5
Zm00001eb269180 Zea mays HOM05D000367 ORTHO05D002159 2.0e-16 89.4 106 44.3
Psat7g233360 Pisum sativum HOM05D000367 ORTHO05D002159 2.6e-16 89.0 105 44.8
Prupe.2G007700 Prunus persica HOM05D000367 ORTHO05D002159 3.4e-16 88.6 106 42.5
Lj3g0011204 Lotus japonicus HOM05D000367 ORTHO05D002159 4.5e-16 88.2 105 44.8
Lalb_Chr01g0015241 Lupinus albus HOM05D000367 ORTHO05D002159 4.5e-16 88.2 105 42.9
VMungo1080G1644 Vigna mungo HOM05D000367 ORTHO05D002159 4.5e-16 88.2 105 43.8
RcHm_v2.0_Chr1g0314781 Rosa chinensis HOM05D000367 ORTHO05D002159 5.9e-16 87.8 106 44.3
Zm00001eb269190 Zea mays HOM05D000367 ORTHO05D002159 5.9e-16 87.8 105 43.8
Os06g0116800 Oryza sativa ssp. japonica HOM05D000367 ORTHO05D002159 7.7e-16 87.4 105 42.9
Lj9A628G60 Lonicera japonica HOM05D000367 ORTHO05D002159 1.0e-15 87.0 106 40.6
Phvul.005G037400 Phaseolus vulgaris HOM05D000367 ORTHO05D002159 1.0e-15 87.0 105 42.9
arahy.Tifrunner.gnm1.ann1.XHNB7E Arachis hypogaea HOM05D000367 ORTHO05D002159 1.3e-15 86.7 106 41.5
Ca_26435_v3 Cicer arietinum L. HOM05D000367 ORTHO05D002159 1.3e-15 86.7 106 41.5
TPR.G9851 Trifolium pratense HOM05D000367 ORTHO05D002159 1.3e-15 86.7 106 41.5
arahy.Tifrunner.gnm1.ann1.SY6123 Arachis hypogaea HOM05D000367 ORTHO05D002159 1.7e-15 86.3 106 41.5
EL10Ac3g05078 Beta vulgaris HOM05D000367 ORTHO05D002159 1.7e-15 86.3 106 42.5
Hund03677 Selenicereus undatus HOM05D000367 ORTHO05D002159 2.9e-15 85.5 106 40.6
vmacro21169 Vaccinium macrocarpon HOM05D000367 ORTHO05D002159 3.8e-15 85.1 83 50.6
Glyma.09G003500 Glycine max HOM05D000367 ORTHO05D002159 6.5e-15 84.3 106 40.6
Glyma.15G271500 Glycine max HOM05D000367 ORTHO05D002159 6.5e-15 84.3 105 42.9
Medtr3g027580 Medicago truncatula HOM05D000367 ORTHO05D002159 6.5e-15 84.3 105 41.9
Psat5g198600 Pisum sativum HOM05D000367 ORTHO05D002159 8.5e-15 84.0 105 41.0
arahy.Tifrunner.gnm1.ann1.GMD6VS Arachis hypogaea HOM05D001512 ORTHO05D001574 1.1e-14 83.6 108 39.8
AUR62033187 Chenopodium quinoa HOM05D000367 ORTHO05D002159 1.1e-14 83.6 106 41.5
AUR62043122 Chenopodium quinoa HOM05D000367 ORTHO05D002159 1.1e-14 83.6 106 41.5
Thecc.01G414700 Theobroma cacao HOM05D000367 ORTHO05D002159 1.1e-14 83.6 106 41.5
Aqoxy4G02746 Aquilegia oxysepala HOM05D000367 ORTHO05D002159 2.5e-14 82.4 105 39.0
Duzib133G0442 Durio zibethinus HOM05D000367 ORTHO05D002159 2.5e-14 82.4 106 40.6
Medtr4g023470 Medicago truncatula HOM05D000367 ORTHO05D002159 2.5e-14 82.4 106 39.6
Os12g0168400 Oryza sativa ssp. japonica HOM05D000367 ORTHO05D002159 5.5e-14 81.3 104 40.4
Duzib138G0929 Durio zibethinus HOM05D000367 ORTHO05D002159 1.6e-13 79.7 106 39.6
TPR.G12203 Trifolium pratense HOM05D000009 ORTHO05D002159 1.6e-13 79.7 104 38.5
Sed0023878 Sechium edule HOM05D000367 ORTHO05D002159 2.1e-13 79.3 105 43.8
SEGI_20977 Sequoiadendron giganteum HOM05D000367 ORTHO05D002159 2.1e-13 79.3 105 38.1
Solyc01g086740.3 Solanum lycopersicum HOM05D000367 ORTHO05D002159 2.7e-13 79.0 106 39.6
Sopen01g033740 Solanum pennellii HOM05D000367 ORTHO05D002159 2.7e-13 79.0 106 39.6
PGSC0003DMG400025245 Solanum tuberosum HOM05D000367 ORTHO05D002159 2.7e-13 79.0 106 39.6
Nitab4.5_0001542g0110 Nicotiana tabacum HOM05D000367 ORTHO05D002159 3.6e-13 78.6 106 39.6
Cc02_g27440 Coffea canephora HOM05D000367 ORTHO05D002159 6.1e-13 77.8 106 41.5
CAN.G1393.19 Capsicum annuum HOM05D000367 ORTHO05D002159 7.9e-13 77.4 106 38.7
Ciclev10031530m.g Citrus clementina HOM05D000367 ORTHO05D002159 7.9e-13 77.4 106 38.7
TWI73G1149 Tripterygium wilfordii HOM05D000367 ORTHO05D002159 7.9e-13 77.4 106 38.7
Nitab4.5_0004883g0010 Nicotiana tabacum HOM05D000367 ORTHO05D002159 1.8e-12 76.3 106 38.7
Atru.chr11.2630 Acer truncatum HOM05D000367 ORTHO05D002159 2.3e-12 75.9 106 38.7
TWI53G1193 Tripterygium wilfordii HOM05D000367 ORTHO05D002159 2.3e-12 75.9 106 36.8
SHI04061 Sapria himalayana HOM05D000367 ORTHO05D002159 3.0e-12 75.5 105 34.3
Manes.10G147900 Manihot esculenta HOM05D000367 ORTHO05D002159 3.9e-12 75.1 105 35.2
Cpa.g.sc444.1 Carica papaya HOM05D000367 ORTHO05D002159 5.1e-12 74.7 106 37.7
Migut.N01486 Erythranthe guttata HOM05D000367 ORTHO05D002159 5.1e-12 74.7 105 36.2
Migut.O00892 Erythranthe guttata HOM05D000367 ORTHO05D002159 5.1e-12 74.7 105 36.2
Medtr4g023490 Medicago truncatula HOM05D000367 ORTHO05D002159 5.1e-12 74.7 106 38.7
Manes.07G003050 Manihot esculenta HOM05D000367 ORTHO05D002159 6.7e-12 74.3 105 35.2
Lj3g0008595 Lotus japonicus HOM05D000367 ORTHO05D002159 8.8e-12 73.9 106 37.7
Hma1.2p1_1011F.1_g247465 Hydrangea macrophylla HOM05D000367 ORTHO05D002159 1.1e-11 73.6 105 38.1
Hma1.2p1_1745F.1_g300300 Hydrangea macrophylla HOM05D000367 ORTHO05D002159 1.1e-11 73.6 105 38.1
Lj7C567T7 Lonicera japonica HOM05D000367 ORTHO05D002159 2.0e-11 72.8 106 37.7
Zm00001eb054940 Zea mays HOM05D006749 ORTHO05D008352 2.5e-11 72.4 46 67.4
Migut.B01341 Erythranthe guttata HOM05D000367 ORTHO05D002159 3.3e-11 72.0 106 36.8
Aqoxy5G02082 Aquilegia oxysepala HOM05D000367 ORTHO05D002159 4.3e-11 71.6 46 65.2
QL04p003543 Quercus lobata HOM05D000367 ORTHO05D002159 4.3e-11 71.6 106 36.8
QL04p004749 Quercus lobata HOM05D000367 ORTHO05D002159 4.3e-11 71.6 106 36.8
SGA_v2.0_scaffold4G02249 Striga asiatica HOM05D000367 ORTHO05D002159 4.3e-11 71.6 47 63.8
MSTRG.20608 Avicennia marina HOM05D000367 ORTHO05D002159 5.7e-11 71.2 105 37.1
CANSAT21G1269 Cannabis sativa HOM05D000367 ORTHO05D002159 5.7e-11 71.2 106 36.8
FvH4_7g00600 Fragaria vesca HOM05D000367 ORTHO05D002159 9.7e-11 70.5 106 37.7
FAN01G1627 Fragaria x ananassa HOM05D000367 ORTHO05D002159 9.7e-11 70.5 106 37.7
FAN01G3019 Fragaria x ananassa HOM05D000367 ORTHO05D002159 9.7e-11 70.5 106 37.7
FAN10G0015 Fragaria x ananassa HOM05D000367 ORTHO05D002159 9.7e-11 70.5 106 37.7
FAN03G2518 Fragaria x ananassa HOM05D000367 ORTHO05D002159 1.3e-10 70.1 106 37.7
FAN06G1089 Fragaria x ananassa HOM05D000367 ORTHO05D002159 1.3e-10 70.1 106 37.7
Potri.009G065500 Populus trichocarpa HOM05D000367 ORTHO05D002159 1.3e-10 70.1 104 34.6
Sabra09G0048700 Salix brachista HOM05D000367 ORTHO05D002159 1.3e-10 70.1 104 34.6
MD02G1316500 Malus domestica HOM05D000367 ORTHO05D002159 2.2e-10 69.3 106 36.8
Potri.001G271300 Populus trichocarpa HOM05D000367 ORTHO05D002159 8.2e-10 67.4 104 33.7
Sabra16G0166700 Salix brachista HOM05D000367 ORTHO05D002159 8.2e-10 67.4 104 33.7
Aa31LG11G7470 Aethionema arabicum HOM05D000367 ORTHO05D002159 1.1e-09 67.0 106 34.0
Cpa.g.sc27.174 Carica papaya HOM05D000367 ORTHO05D002159 1.4e-09 66.6 106 34.9
CiPaw.13G002000 Carya illinoinensis HOM05D000367 ORTHO05D002159 1.4e-09 66.6 105 36.2
Ah.04g166050 Amaranthus hybridus HOM05D000120 ORTHO05D002159 3.1e-09 65.5 45 60.0
BcaC03g17626 Brassica carinata HOM05D000367 ORTHO05D002159 4.1e-09 65.1 106 34.0
A02p37200 Brassica napus HOM05D000367 ORTHO05D002159 4.1e-09 65.1 106 34.0
C02p56230 Brassica napus HOM05D001393 ORTHO05D002159 4.1e-09 65.1 106 34.0
BolC2t11681H Brassica oleracea HOM05D000367 ORTHO05D002159 4.1e-09 65.1 106 34.0
BraA02t08707Z Brassica rapa HOM05D000367 ORTHO05D002159 4.1e-09 65.1 106 34.0
Gohir.A08G053500 Gossypium hirsutum HOM05D000367 ORTHO05D002159 4.1e-09 65.1 106 34.9
Gohir.D08G063000 Gossypium hirsutum HOM05D000367 ORTHO05D002159 4.1e-09 65.1 106 34.9
Gorai.004G065200 Gossypium raimondii HOM05D000367 ORTHO05D002159 4.1e-09 65.1 106 34.9
Sc14g0005160 Simmondsia chinensis HOM05D000367 ORTHO05D002159 4.1e-09 65.1 106 36.8
AL8G20290 Arabidopsis lyrata HOM05D000367 ORTHO05D002159 5.3e-09 64.7 106 33.0
AT5G48030 Arabidopsis thaliana HOM05D000367 ORTHO05D002159 9.1e-09 63.9 106 33.0
Sp2g18480 Schrenkiella parvula HOM05D000367 ORTHO05D002159 9.1e-09 63.9 106 33.0
Zm00001eb407790 Zea mays HOM05D000367 ORTHO05D002159 9.1e-09 63.9 103 35.9
CARHR258390 Cardamine hirsuta HOM05D000367 ORTHO05D002159 1.2e-08 63.5 106 33.0
RcHm_v2.0_Chr6g0284191 Rosa chinensis HOM05D000367 ORTHO05D002159 1.2e-08 63.5 105 33.3
BcaB07g30000 Brassica carinata HOM05D000367 ORTHO05D002159 1.5e-08 63.2 106 33.0
Haze_03249 Corylus avellana HOM05D000367 ORTHO05D002159 1.5e-08 63.2 106 34.0
Carub.0008s0758 Capsella rubella HOM05D000367 ORTHO05D002159 2.0e-08 62.8 106 33.0
Thhalv10004199m.g Eutrema salsugineum HOM05D000367 ORTHO05D002159 2.0e-08 62.8 106 32.1
CARHR184280 Cardamine hirsuta HOM05D000367 ORTHO05D002159 2.6e-08 62.4 106 33.0
Cfa010724 Carpinus fangiana HOM05D000367 ORTHO05D002159 2.6e-08 62.4 106 34.0
CBR_g51324 Chara braunii HOM05D000367 ORTHO05D002159 4.5e-08 61.6 46 50.0
COL.COLO4_23907 Corchorus olitorius HOM05D000367 ORTHO05D002159 5.9e-08 61.2 106 33.0
unitig_0.g1374 Utricularia gibba HOM05D000367 ORTHO05D002159 5.9e-08 61.2 105 32.4
BcaC06g30829 Brassica carinata HOM05D000367 ORTHO05D002159 1.0e-07 60.5 106 32.1
A06p39400 Brassica napus HOM05D000367 ORTHO05D002159 1.0e-07 60.5 106 32.1
C07p38870 Brassica napus HOM05D000367 ORTHO05D002159 1.0e-07 60.5 106 32.1
BolC7t44406H Brassica oleracea HOM05D000367 ORTHO05D002159 1.0e-07 60.5 106 32.1
BraA06t26855Z Brassica rapa HOM05D000367 ORTHO05D002159 1.0e-07 60.5 106 32.1
Pp3c23_15370 Physcomitrium patens HOM05D000367 ORTHO05D002159 1.7e-07 59.7 103 29.1
PGR031G3372 Punica granatum HOM05D000367 ORTHO05D002159 1.7e-07 59.7 106 33.0
THA.LOC104819058 Tarenaya hassleriana HOM05D000367 ORTHO05D002159 2.9e-07 58.9 106 31.1
Actinidia21567 Actinidia chinensis HOM05D000367 ORTHO05D002159 8.5e-07 57.4 42 66.7
Dinv43472 Davidia involucrata HOM05D000367 ORTHO05D002159 1.1e-06 57.0 29 82.8
THA.LOC104826668 Tarenaya hassleriana HOM05D000367 ORTHO05D002159 1.1e-06 57.0 106 31.1
Oeu043588.1 Olea europaea HOM05D000367 ORTHO05D002159 1.4e-06 56.6 33 69.7
SMO145G0132 Selaginella moellendorffii HOM05D000367 ORTHO05D002159 1.9e-06 56.2 46 50.0
SGA_v2.0_scaffold260G45867 Striga asiatica HOM05D000367 ORTHO05D002159 9.4e-06 53.9 105 31.4


User provided reference genes

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