Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039398 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 3.6e-85 318.2 157 100.0
CSS0023224 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 5.9e-19 98.2 48 100.0
vmacro18526 Vaccinium macrocarpon HOM05D006674 ORTHO05D007954 6.8e-15 84.7 48 87.5
Actinidia28801 Actinidia chinensis HOM05D006674 ORTHO05D007954 2.6e-14 82.8 48 83.3
Rhsim08G0019400 Rhododendron simsii HOM05D006674 ORTHO05D007954 7.5e-14 81.3 48 83.3
ATR0753G123 Amborella trichopoda HOM05D006674 ORTHO05D007954 3.7e-13 79.0 48 77.1
Sc11g0004590 Simmondsia chinensis HOM05D006674 ORTHO05D007954 4.9e-13 78.6 48 75.0
CiPaw.03G073400 Carya illinoinensis HOM05D006674 ORTHO05D007954 8.3e-13 77.8 48 72.9
Manes.01G119600 Manihot esculenta HOM05D006674 ORTHO05D007954 1.4e-12 77.0 48 77.1
Duzib133G1445 Durio zibethinus HOM05D006674 ORTHO05D007954 1.8e-12 76.6 48 75.0
Gohir.A07G073700 Gossypium hirsutum HOM05D006674 ORTHO05D007954 1.8e-12 76.6 48 75.0
Gorai.001G082800 Gossypium raimondii HOM05D006674 ORTHO05D007954 1.8e-12 76.6 48 75.0
Haze_14280 Corylus avellana HOM05D006674 ORTHO05D007954 5.4e-12 75.1 48 75.0
AUR62042219 Chenopodium quinoa HOM05D006674 ORTHO05D007954 9.2e-12 74.3 48 70.8
Nitab4.5_0001650g0150 Nicotiana tabacum HOM05D006674 ORTHO05D007954 9.2e-12 74.3 48 70.8
Nitab4.5_0009806g0010 Nicotiana tabacum HOM05D006674 ORTHO05D007954 9.2e-12 74.3 48 70.8
Thecc.04G053800 Theobroma cacao HOM05D006674 ORTHO05D007954 9.2e-12 74.3 48 72.9
Gohir.D07G078400 Gossypium hirsutum HOM05D006674 ORTHO05D007954 1.2e-11 73.9 48 72.9
TWI77G1007 Tripterygium wilfordii HOM05D006674 ORTHO05D007954 1.2e-11 73.9 48 70.8
Atru.chr1.1984 Acer truncatum HOM05D006674 ORTHO05D007954 1.6e-11 73.6 48 72.9
Aqoxy5G02269 Aquilegia oxysepala HOM05D006674 ORTHO05D007954 2.0e-11 73.2 48 72.9
Dinv28183 Davidia involucrata HOM05D006674 ORTHO05D007954 2.0e-11 73.2 48 70.8
Cc07_g13280 Coffea canephora HOM05D006674 ORTHO05D007954 2.7e-11 72.8 48 72.9
Nn4g24371 Nelumbo nucifera HOM05D006674 ORTHO05D007954 2.7e-11 72.8 48 68.8
Sabra04G0056300 Salix brachista HOM05D006674 ORTHO05D007954 2.7e-11 72.8 48 68.8
CAN.G222.57 Capsicum annuum HOM05D006674 ORTHO05D007954 4.5e-11 72.0 48 70.8
COL.COLO4_13419 Corchorus olitorius HOM05D006674 ORTHO05D007954 4.5e-11 72.0 50 70.0
GSVIVG01030703001 Vitis vinifera HOM05D006674 ORTHO05D007954 5.9e-11 71.6 48 68.8
Prupe.3G166300 Prunus persica HOM05D006674 ORTHO05D007954 7.8e-11 71.2 48 70.8
arahy.Tifrunner.gnm1.ann1.M54V7M Arachis hypogaea HOM05D006674 ORTHO05D007954 1.0e-10 70.9 48 68.8
arahy.Tifrunner.gnm1.ann1.V27PH4 Arachis hypogaea HOM05D006674 ORTHO05D007954 1.0e-10 70.9 48 68.8
MD17G1268600 Malus domestica HOM05D006674 ORTHO05D007954 1.7e-10 70.1 48 66.7
Peaxi162Scf00562g00218 Petunia axillaris HOM05D006674 ORTHO05D007954 1.7e-10 70.1 48 66.7
PGSC0003DMG400013236 Solanum tuberosum HOM05D006674 ORTHO05D007954 2.3e-10 69.7 48 66.7
Eucgr.F02873 Eucalyptus grandis HOM05D006674 ORTHO05D007954 2.9e-10 69.3 48 66.7
Lj4C259T11 Lonicera japonica HOM05D006674 ORTHO05D007954 2.9e-10 69.3 48 66.7
Potri.004G085200 Populus trichocarpa HOM05D006674 ORTHO05D007954 3.8e-10 68.9 48 66.7
PGR004G1202 Punica granatum HOM05D006674 ORTHO05D007954 3.8e-10 68.9 50 68.0
Lj6g0000042 Lotus japonicus HOM05D006674 ORTHO05D007954 5.0e-10 68.6 48 68.8
VMungo1383G3322 Vigna mungo HOM05D006674 ORTHO05D007954 6.6e-10 68.2 48 68.8
Migut.H02229 Erythranthe guttata HOM05D006674 ORTHO05D007954 8.6e-10 67.8 48 62.5
Glyma.18G041200 Glycine max HOM05D006674 ORTHO05D007954 8.6e-10 67.8 48 66.7
Lalb_Chr15g0084971 Lupinus albus HOM05D006674 ORTHO05D007954 8.6e-10 67.8 48 64.6
FAN26G0259 Fragaria x ananassa HOM05D006674 ORTHO05D007954 1.1e-09 67.4 55 58.2
EL10Ac2g03314 Beta vulgaris HOM05D006674 ORTHO05D007954 1.5e-09 67.0 48 62.5
DCAR_016695 Daucus carota HOM05D006674 ORTHO05D007954 2.5e-09 66.2 48 64.6
Glyma.11G215400 Glycine max HOM05D006674 ORTHO05D007954 2.5e-09 66.2 48 66.7
Lsat_1_v5_gn_1_78040 Lactuca sativa HOM05D006674 ORTHO05D007954 2.5e-09 66.2 48 64.6
Psat5g120320 Pisum sativum HOM05D006674 ORTHO05D007954 2.5e-09 66.2 48 64.6
THA.LOC104805245 Tarenaya hassleriana HOM05D006674 ORTHO05D007954 2.5e-09 66.2 48 66.7
Phvul.001G229300 Phaseolus vulgaris HOM05D006674 ORTHO05D007954 3.3e-09 65.9 48 66.7
RcHm_v2.0_Chr3g0491391 Rosa chinensis HOM05D006674 ORTHO05D007954 5.6e-09 65.1 48 60.4
Solyc11g011390.3 Solanum lycopersicum HOM05D006674 ORTHO05D007954 5.6e-09 65.1 48 62.5
Sopen11g006190 Solanum pennellii HOM05D006674 ORTHO05D007954 7.3e-09 64.7 48 62.5
CDE06G1904 Ceratophyllum demersum HOM05D006674 ORTHO05D007954 9.5e-09 64.3 48 64.6
Os04g0278200 Oryza sativa ssp. japonica HOM05D006674 ORTHO05D007954 1.2e-08 63.9 48 60.4
FvH4_1g30190 Fragaria vesca HOM05D006674 ORTHO05D007954 2.8e-08 62.8 48 60.4
Medtr3g065220 Medicago truncatula HOM05D006674 ORTHO05D007954 2.8e-08 62.8 48 62.5
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 3.6e-08 62.4 40 70.0
TPR.G24904 Trifolium pratense HOM05D006674 ORTHO05D007954 6.1e-08 61.6 48 62.5
Ciclev10011395m.g Citrus clementina HOM05D006674 ORTHO05D007954 8.0e-08 61.2 44 68.2
HanXRQChr09g0259811 Helianthus annuus HOM05D006674 ORTHO05D007954 1.0e-07 60.8 48 58.3
ECA236G3280 Erigeron canadensis HOM05D006674 ORTHO05D007954 1.4e-07 60.5 49 59.2
Ca_17090_v3 Cicer arietinum L. HOM05D006674 ORTHO05D007954 1.8e-07 60.1 48 60.4
ClCG05G010650 Citrullus lanatus HOM05D006674 ORTHO05D007954 2.3e-07 59.7 48 56.2
BcaC02g09589 Brassica carinata HOM05D006674 ORTHO05D007954 5.2e-07 58.5 48 54.2
C04p44470 Brassica napus HOM05D006674 ORTHO05D007954 5.2e-07 58.5 48 54.2
BolC4t26017H Brassica oleracea HOM05D006674 ORTHO05D007954 5.2e-07 58.5 48 54.2
BraA04t16739Z Brassica rapa HOM05D006674 ORTHO05D007954 5.2e-07 58.5 48 54.2
MELO3C031718.2 Cucumis melo HOM05D006674 ORTHO05D007954 5.2e-07 58.5 48 56.2
Thhalv10027712m.g Eutrema salsugineum HOM05D006674 ORTHO05D007954 6.8e-07 58.2 48 56.2
A04p10750 Brassica napus HOM05D006674 ORTHO05D007954 8.9e-07 57.8 48 54.2
unitig_27.g24984 Utricularia gibba HOM05D006674 ORTHO05D007954 8.9e-07 57.8 48 56.2
Aa31LG9G17490 Aethionema arabicum HOM05D006674 ORTHO05D007954 1.2e-06 57.4 48 56.2
CsaV3_3G017830 Cucumis sativus L. HOM05D006674 ORTHO05D007954 1.5e-06 57.0 48 54.2
AL7G46330 Arabidopsis lyrata HOM05D006674 ORTHO05D007954 2.0e-06 56.6 48 52.1
arahy.Tifrunner.gnm1.ann1.MX1HDN Arachis hypogaea HOM05D006674 ORTHO05D007954 5.8e-06 55.1 41 63.4
arahy.Tifrunner.gnm1.ann1.PS0MXP Arachis hypogaea HOM05D006674 ORTHO05D007954 5.8e-06 55.1 41 63.4
Sp7g04510 Schrenkiella parvula HOM05D006674 ORTHO05D007954 5.8e-06 55.1 48 52.1
arahy.Tifrunner.gnm1.ann1.EIPD4W Arachis hypogaea HOM05D006674 ORTHO05D007954 7.5e-06 54.7 41 65.9
BcaB06g27104 Brassica carinata HOM05D006674 ORTHO05D007954 7.5e-06 54.7 48 52.1


User provided reference genes

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