Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039389 Camellia sinensis var. sinensis HOM05D006326 ORTHO05D007589 5.0e-242 840.9 486 100.0
Actinidia17957 Actinidia chinensis HOM05D006326 ORTHO05D007589 3.4e-150 535.8 506 68.8
Dinv05303 Davidia involucrata HOM05D006326 ORTHO05D007589 7.9e-139 498.0 510 66.9
Actinidia37880 Actinidia chinensis HOM05D006326 ORTHO05D007589 8.8e-138 494.6 454 69.6
Dinv07946 Davidia involucrata HOM05D006326 ORTHO05D007589 1.1e-132 477.6 509 60.7
GSVIVG01033643001 Vitis vinifera HOM05D006326 ORTHO05D007589 1.5e-132 477.2 517 58.2
Atru.chr1.1394 Acer truncatum HOM05D006326 ORTHO05D007589 4.7e-123 445.7 505 56.4
Thecc.05G128800 Theobroma cacao HOM05D006326 ORTHO05D007589 3.7e-104 382.9 503 56.5
TAR623G0088 Trochodendron aralioides HOM05D006326 ORTHO05D007589 9.2e-103 378.3 521 50.9
CiPaw.09G048500 Carya illinoinensis HOM05D006326 ORTHO05D007589 1.3e-101 374.4 519 50.9
Haze_20235 Corylus avellana HOM05D006326 ORTHO05D007589 1.9e-95 354.0 480 57.1
RcHm_v2.0_Chr6g0276151 Rosa chinensis HOM05D006326 ORTHO05D007589 5.0e-93 345.9 503 50.7
CsaV3_4G029490 Cucumis sativus L. HOM05D006326 ORTHO05D007589 7.3e-92 342.0 502 50.6
MD14G1089900 Malus domestica HOM05D006326 ORTHO05D007589 1.6e-91 340.9 511 49.3
Potri.016G036000 Populus trichocarpa HOM05D006326 ORTHO05D007589 3.6e-91 339.7 492 49.8
vmacro07781 Vaccinium macrocarpon HOM05D006326 ORTHO05D007589 1.1e-90 338.2 495 51.9
ClCG04G005630 Citrullus lanatus HOM05D006326 ORTHO05D007589 1.8e-90 337.4 539 47.5
CSS0038712 Camellia sinensis var. sinensis HOM05D006326 ORTHO05D007589 7.1e-87 325.5 358 62.8
FAN20G2839 Fragaria x ananassa HOM05D006326 ORTHO05D007589 7.8e-86 322.0 505 49.7
QL07p011201 Quercus lobata HOM05D006326 ORTHO05D007589 1.7e-85 320.9 510 48.8
Rhsim03G0036800 Rhododendron simsii HOM05D006326 ORTHO05D007589 3.0e-85 320.1 643 43.2
Gohir.D09G115200 Gossypium hirsutum HOM05D006326 ORTHO05D007589 1.6e-83 314.3 508 49.4
Peaxi162Scf00076g00325 Petunia axillaris HOM05D006326 ORTHO05D007589 1.6e-83 314.3 529 50.1
Cpa.g.sc92.89 Carica papaya HOM05D006326 ORTHO05D007589 2.8e-83 313.5 520 50.2
Hma1.2p1_0252F.1_g102780 Hydrangea macrophylla HOM05D006326 ORTHO05D007589 2.8e-83 313.5 427 57.1
Manes.09G004100 Manihot esculenta HOM05D006326 ORTHO05D007589 6.2e-83 312.4 442 51.8
Aqoxy1G00376 Aquilegia oxysepala HOM05D006326 ORTHO05D007589 1.4e-82 311.2 515 47.6
Oeu057785.1 Olea europaea HOM05D006326 ORTHO05D007589 2.4e-82 310.5 507 47.1
Oeu057784.1 Olea europaea HOM05D006326 ORTHO05D007589 1.5e-81 307.8 507 47.1
FAN15G3215 Fragaria x ananassa HOM05D006326 ORTHO05D007589 3.4e-81 306.6 492 48.8
Ca_05361_v3 Cicer arietinum L. HOM05D006326 ORTHO05D007589 4.4e-81 306.2 489 47.4
FvH4_2g14070 Fragaria vesca HOM05D006326 ORTHO05D007589 9.9e-81 305.1 505 48.1
Oeu022970.2 Olea europaea HOM05D006326 ORTHO05D007589 9.9e-81 305.1 505 47.3
Prupe.7G034100 Prunus persica HOM05D006326 ORTHO05D007589 3.8e-80 303.1 487 49.5
Psat6g129480 Pisum sativum HOM05D006326 ORTHO05D007589 4.9e-80 302.8 488 47.1
Gorai.006G132800 Gossypium raimondii HOM05D006326 ORTHO05D007589 2.1e-78 297.4 508 48.0
Lj5g0016845 Lotus japonicus HOM05D006326 ORTHO05D007589 7.8e-78 295.4 502 45.4
Potri.006G039900 Populus trichocarpa HOM05D006326 ORTHO05D007589 2.5e-76 290.4 489 45.8
Dinv01681 Davidia involucrata HOM05D006326 ORTHO05D007589 1.2e-75 288.1 395 54.2
MSTRG.19798 Avicennia marina HOM05D006326 ORTHO05D007589 6.2e-75 285.8 496 47.2
COL.COLO4_37458 Corchorus olitorius HOM05D006326 ORTHO05D007589 3.1e-74 283.5 482 46.5
CAN.G51.3 Capsicum annuum HOM05D006326 ORTHO05D007589 9.0e-74 282.0 490 48.0
Lalb_Chr02g0156611 Lupinus albus HOM05D006326 ORTHO05D007589 2.0e-73 280.8 482 47.1
SalBow6G7225 Salvia bowleyana HOM05D006326 ORTHO05D007589 5.8e-73 279.3 503 44.7
CiPaw.10G040500 Carya illinoinensis HOM05D006326 ORTHO05D007589 2.9e-72 276.9 462 48.5
DCAR_013645 Daucus carota HOM05D002003 ORTHO05D002037 3.8e-72 276.6 482 44.6
Sabra06G0026900 Salix brachista HOM05D006326 ORTHO05D007589 2.4e-71 273.9 489 44.6
SabraUnG0002500 Salix brachista HOM05D006326 ORTHO05D007589 2.4e-71 273.9 489 44.6
Nitab4.5_0002982g0070 Nicotiana tabacum HOM05D006326 ORTHO05D007589 1.6e-70 271.2 512 47.9
Phvul.007G233400 Phaseolus vulgaris HOM05D006326 ORTHO05D007589 5.1e-69 266.2 484 43.0
TWI74G0746 Tripterygium wilfordii HOM05D006326 ORTHO05D007589 9.6e-68 261.9 446 46.9
Nitab4.5_0000237g0060 Nicotiana tabacum HOM05D006326 ORTHO05D007589 3.6e-67 260.0 512 45.5
Ciclev10011438m.g Citrus clementina HOM05D006326 ORTHO05D007589 1.8e-66 257.7 447 47.0
VMungo0720G1800 Vigna mungo HOM05D006326 ORTHO05D007589 5.8e-65 252.7 457 44.6
Lsat_1_v5_gn_9_29721 Lactuca sativa HOM05D006326 ORTHO05D007589 3.8e-64 250.0 489 45.2
Medtr1g050510 Medicago truncatula HOM05D006326 ORTHO05D007589 3.2e-63 246.9 472 43.2
AUR62030307 Chenopodium quinoa HOM05D006326 ORTHO05D007589 7.1e-63 245.7 487 46.4
AUR62018355 Chenopodium quinoa HOM05D006326 ORTHO05D007589 2.7e-62 243.8 487 47.4
Cc06_g19610 Coffea canephora HOM05D006326 ORTHO05D007589 6.0e-62 242.7 456 49.1
Sopen12g010520 Solanum pennellii HOM05D006326 ORTHO05D007589 7.9e-62 242.3 443 46.5
Duzib128G1973 Durio zibethinus HOM05D006326 ORTHO05D007589 1.8e-61 241.1 400 46.2
arahy.Tifrunner.gnm1.ann1.Z1KKER Arachis hypogaea HOM05D006326 ORTHO05D007589 5.1e-61 239.6 491 42.2
arahy.Tifrunner.gnm1.ann1.0NJ1V1 Arachis hypogaea HOM05D006326 ORTHO05D007589 8.7e-61 238.8 487 42.5
FAN24G3485 Fragaria x ananassa HOM05D006326 ORTHO05D007589 1.5e-60 238.0 454 45.2
Eucgr.B03116 Eucalyptus grandis HOM05D006326 ORTHO05D007589 4.3e-60 236.5 461 41.2
ATR0317G072 Amborella trichopoda HOM05D006326 ORTHO05D007589 9.6e-60 235.3 560 40.0
Glyma.02G166100 Glycine max HOM05D006326 ORTHO05D007589 1.3e-59 235.0 437 43.9
CANSAT64G1393 Cannabis sativa HOM05D006326 ORTHO05D007589 3.7e-59 233.4 460 43.7
MELO3C019097.2 Cucumis melo HOM05D006326 ORTHO05D007589 9.0e-58 228.8 453 43.0
ECA247G0820 Erigeron canadensis HOM05D006326 ORTHO05D007589 2.0e-57 227.6 478 43.9
Solyc12g020000.3 Solanum lycopersicum HOM05D006326 ORTHO05D007589 2.2e-56 224.2 451 45.7
SGA_v2.0_scaffold69G23160 Striga asiatica HOM05D006326 ORTHO05D007589 6.4e-56 222.6 489 41.5
Gohir.A09G118300 Gossypium hirsutum HOM05D006326 ORTHO05D007589 5.5e-55 219.5 450 43.6
unitig_60.g25479 Utricularia gibba HOM05D006326 ORTHO05D007589 1.6e-54 218.0 489 40.9
Ah.13g076820 Amaranthus hybridus HOM05D002003 ORTHO05D002037 3.5e-54 216.9 483 45.1
EL10Ac3g07247 Beta vulgaris HOM05D006326 ORTHO05D007589 4.6e-54 216.5 491 44.4
TWI53G1954 Tripterygium wilfordii HOM05D006326 ORTHO05D007589 6.7e-53 212.6 443 43.1
Aa31LG10G11560 Aethionema arabicum HOM05D006326 ORTHO05D007589 1.9e-52 211.1 513 38.0
Sp5g05840 Schrenkiella parvula HOM05D006326 ORTHO05D007589 3.3e-52 210.3 492 40.2
Hund19089 Selenicereus undatus HOM05D006326 ORTHO05D007589 3.3e-52 210.3 526 42.2
Nn7g36809 Nelumbo nucifera HOM05D006326 ORTHO05D007589 8.2e-51 205.7 444 40.5
HPP92_019182 Vanilla planifolia HOM05D006326 ORTHO05D007589 2.4e-50 204.1 509 39.1
Migut.J01646 Erythranthe guttata HOM05D006326 ORTHO05D007589 9.0e-50 202.2 435 41.6
CARHR166860 Cardamine hirsuta HOM05D006326 ORTHO05D007589 2.6e-49 200.7 494 38.9
Glyma.10G102200 Glycine max HOM05D006326 ORTHO05D007589 4.5e-49 199.9 432 41.7
Hma1.2p1_0975F.1_g243130 Hydrangea macrophylla HOM05D006326 ORTHO05D007589 1.3e-48 198.4 330 47.3
Hma1.2p1_0975F.1_g243140 Hydrangea macrophylla HOM05D006326 ORTHO05D007589 1.3e-48 198.4 330 47.3
HanXRQChr15g0491141 Helianthus annuus HOM05D006326 ORTHO05D007589 5.5e-47 193.0 225 57.8
AL5G38090 Arabidopsis lyrata HOM05D006326 ORTHO05D007589 6.0e-46 189.5 489 38.4
Carub.0005s2347 Capsella rubella HOM05D006326 ORTHO05D007589 1.1e-44 185.3 491 38.9
Sed0018260 Sechium edule HOM05D006326 ORTHO05D007589 3.3e-44 183.7 402 42.3
BolC8t50813H Brassica oleracea HOM05D006326 ORTHO05D007589 5.7e-44 183.0 306 45.1
Sc13g0001090 Simmondsia chinensis HOM05D006326 ORTHO05D007589 7.4e-44 182.6 447 40.3
PSO384G3095 Papaver somniferum HOM05D006326 ORTHO05D007589 4.8e-43 179.9 453 38.0
BcaC07g39981 Brassica carinata HOM05D006326 ORTHO05D007589 1.4e-42 178.3 260 47.3
CDE04G2458 Ceratophyllum demersum HOM05D006326 ORTHO05D007589 1.8e-42 177.9 182 57.7
SGA_v2.0_scaffold1000G53781 Striga asiatica HOM05D006326 ORTHO05D007589 1.8e-42 177.9 286 46.9
BcaC07g40122 Brassica carinata HOM05D006326 ORTHO05D007589 2.4e-42 177.6 479 36.7
PSO339G2802 Papaver somniferum HOM05D006326 ORTHO05D007589 6.9e-42 176.0 453 38.0
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 9.0e-42 175.6 472 36.7
SGA_v2.0_scaffold66G22355 Striga asiatica HOM05D006326 ORTHO05D007589 5.5e-39 166.4 123 73.2
unitig_0.g603 Utricularia gibba HOM05D006326 ORTHO05D007589 7.2e-39 166.0 191 57.1
THA.LOC104815890 Tarenaya hassleriana HOM05D006326 ORTHO05D007589 1.9e-36 157.9 434 41.5
TPR.G7607 Trifolium pratense HOM05D006326 ORTHO05D007589 1.1e-34 152.1 486 35.6
Thhalv10005957m.g Eutrema salsugineum HOM05D006326 ORTHO05D007589 1.7e-32 144.8 436 36.2
Pp3c14_4840 Physcomitrium patens HOM05D006326 ORTHO05D007589 5.0e-32 143.3 166 52.4
Mapoly0069s0088 Marchantia polymorpha HOM05D006326 ORTHO05D007589 4.7e-30 136.7 224 43.3
SEGI_11590 Sequoiadendron giganteum HOM05D006326 ORTHO05D007589 4.7e-30 136.7 580 31.6
AagrBONN_evm.TU.Sc2ySwM_344.979 Anthoceros agrestis HOM05D006326 ORTHO05D007589 5.1e-29 133.3 246 42.3
PGR142G2735 Punica granatum HOM05D006326 ORTHO05D007589 7.4e-28 129.4 433 38.6
Medtr0722s0010 Medicago truncatula HOM05D006326 ORTHO05D007589 1.7e-24 118.2 77 80.5
A09p49570 Brassica napus HOM05D006326 ORTHO05D007589 8.5e-24 115.9 426 34.5
BraA09t40410Z Brassica rapa HOM05D006326 ORTHO05D007589 8.5e-24 115.9 426 34.5
Actinidia01833 Actinidia chinensis HOM05D006326 ORTHO05D007589 4.2e-23 113.6 74 82.4
Actinidia01832 Actinidia chinensis HOM05D006326 ORTHO05D007589 9.4e-23 112.5 190 45.3
Pp3c1_21670 Physcomitrium patens HOM05D006326 ORTHO05D007589 6.1e-22 109.8 113 54.0
SMO351G0508 Selaginella moellendorffii HOM05D006326 ORTHO05D007589 2.0e-17 94.7 216 38.0
CSS0022371 Camellia sinensis var. sinensis HOM05D006326 ORTHO05D007589 7.7e-17 92.8 63 74.6
CBR_g50470 Chara braunii HOM05D006326 ORTHO05D007589 8.0e-14 82.8 333 31.5
SGA_v2.0_scaffold66G22262 Striga asiatica HOM05D006326 ORTHO05D007589 7.5e-12 76.3 496 28.6
Zm00001eb185630 Zea mays HOM05D006326 ORTHO05D007589 9.7e-12 75.9 276 30.1
Mapoly0021s0060 Marchantia polymorpha HOM05D006326 ORTHO05D007589 3.8e-08 63.9 105 40.0
CSS0001940 Camellia sinensis var. sinensis HOM05D006326 ORTHO05D007589 5.0e-08 63.5 43 81.4
SGA_v2.0_scaffold66G22360 Striga asiatica HOM05D006326 ORTHO05D007589 8.5e-08 62.8 475 33.1
Dinv25932 Davidia involucrata HOM05D000657 ORTHO05D002092 1.6e-06 58.5 45 71.1


User provided reference genes

Program Settings