Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039381 Camellia sinensis var. sinensis HOM05D006331 ORTHO05D008043 3.0e-96 355.1 174 100.0
CSS0012546 Camellia sinensis var. sinensis HOM05D006331 ORTHO05D008043 1.4e-82 309.7 151 100.0
CSS0035477 Camellia sinensis var. sinensis HOM05D006331 ORTHO05D008043 1.4e-82 309.7 151 100.0
CSS0043984 Camellia sinensis var. sinensis HOM05D006331 ORTHO05D008043 1.4e-82 309.7 151 100.0
Actinidia16518 Actinidia chinensis HOM05D006331 ORTHO05D008043 3.7e-62 241.9 155 76.1
Atru.chr4.1109 Acer truncatum HOM05D006331 ORTHO05D008043 4.8e-62 241.5 157 74.5
Atru.BG.96.p Acer truncatum HOM05D006331 ORTHO05D008043 6.3e-62 241.1 157 73.9
QL10p040044 Quercus lobata HOM05D006331 ORTHO05D008043 5.3e-61 238.0 157 76.4
Gohir.A12G001900 Gossypium hirsutum HOM05D006331 ORTHO05D008043 9.1e-61 237.3 156 73.7
Gorai.008G001100 Gossypium raimondii HOM05D006331 ORTHO05D008043 1.5e-60 236.5 156 73.7
Lj4A830T32 Lonicera japonica HOM05D006331 ORTHO05D008043 1.3e-59 233.4 164 70.1
TWI75G0452 Tripterygium wilfordii HOM05D006331 ORTHO05D008043 1.7e-59 233.0 157 73.2
CANSAT01G2335 Cannabis sativa HOM05D006331 ORTHO05D008043 2.2e-59 232.6 151 74.2
Gohir.D12G001700 Gossypium hirsutum HOM05D006331 ORTHO05D008043 2.2e-59 232.6 156 73.1
Duzib264G0015 Durio zibethinus HOM05D006331 ORTHO05D008043 8.5e-59 230.7 156 73.1
Hma1.2p1_2302F.1_g319320 Hydrangea macrophylla HOM05D006331 ORTHO05D008043 2.5e-58 229.2 155 73.5
Sabra07G0082300 Salix brachista HOM05D006331 ORTHO05D008043 4.2e-58 228.4 158 72.8
Sc16g0009670 Simmondsia chinensis HOM05D006331 ORTHO05D008043 4.2e-58 228.4 157 70.1
Cfa002176 Carpinus fangiana HOM05D006331 ORTHO05D008043 7.2e-58 227.6 167 68.9
Cfa002168 Carpinus fangiana HOM05D006331 ORTHO05D008043 4.7e-57 224.9 160 70.6
CiPaw.03G115600 Carya illinoinensis HOM05D006331 ORTHO05D008043 7.9e-57 224.2 157 71.3
Thecc.01G141800 Theobroma cacao HOM05D006331 ORTHO05D008043 7.9e-57 224.2 160 70.0
GSVIVG01022367001 Vitis vinifera HOM05D006331 ORTHO05D008043 1.0e-56 223.8 150 73.3
Potri.007G098700 Populus trichocarpa HOM05D006331 ORTHO05D008043 1.4e-56 223.4 158 72.2
Eucgr.H05078 Eucalyptus grandis HOM05D006331 ORTHO05D008043 1.8e-56 223.0 167 67.1
Hund07213 Selenicereus undatus HOM05D006331 ORTHO05D008043 3.9e-56 221.9 152 67.8
Ah.06g188590 Amaranthus hybridus HOM05D006331 ORTHO05D008043 5.1e-56 221.5 153 69.3
TAR376G0453 Trochodendron aralioides HOM05D006331 ORTHO05D008043 8.8e-56 220.7 156 66.7
Cpa.g.sc37.37 Carica papaya HOM05D006331 ORTHO05D008043 1.1e-55 220.3 157 69.4
Solyc03g043750.3 Solanum lycopersicum HOM05D006331 ORTHO05D008043 1.5e-55 219.9 152 68.4
Sopen03g007600 Solanum pennellii HOM05D006331 ORTHO05D008043 3.3e-55 218.8 154 67.5
RcHm_v2.0_Chr7g0202111 Rosa chinensis HOM05D006331 ORTHO05D008043 4.4e-55 218.4 157 68.8
MD04G1081700 Malus domestica HOM05D006331 ORTHO05D008043 5.7e-55 218.0 151 70.2
Manes.10G075600 Manihot esculenta HOM05D006331 ORTHO05D008043 5.7e-55 218.0 157 69.4
Prupe.5G076700 Prunus persica HOM05D006331 ORTHO05D008043 5.7e-55 218.0 157 67.5
Glyma.05G195400 Glycine max HOM05D006331 ORTHO05D008043 1.7e-54 216.5 156 67.3
Lj4g0002141 Lotus japonicus HOM05D006331 ORTHO05D008043 1.7e-54 216.5 156 67.3
Haze_25343 Corylus avellana HOM05D006331 ORTHO05D008043 2.2e-54 216.1 166 67.5
TPR.G37385 Trifolium pratense HOM05D006331 ORTHO05D008043 2.2e-54 216.1 156 68.6
MSTRG.3598 Avicennia marina HOM05D006331 ORTHO05D008043 2.8e-54 215.7 155 65.2
COL.COLO4_12111 Corchorus olitorius HOM05D006331 ORTHO05D008043 2.8e-54 215.7 117 85.5
Peaxi162Scf00699g00515 Petunia axillaris HOM05D006331 ORTHO05D008043 2.8e-54 215.7 153 68.0
Medtr8g094730 Medicago truncatula HOM05D006331 ORTHO05D008043 3.7e-54 215.3 151 69.5
PGR102G1699 Punica granatum HOM05D006331 ORTHO05D008043 3.7e-54 215.3 151 68.2
Cc07_g19500 Coffea canephora HOM05D006331 ORTHO05D008043 4.8e-54 214.9 151 69.5
PGSC0003DMG400016687 Solanum tuberosum HOM05D006331 ORTHO05D008043 1.1e-53 213.8 153 66.7
Nitab4.5_0004338g0140 Nicotiana tabacum HOM05D006331 ORTHO05D008043 1.8e-53 213.0 153 66.0
EL10Ac4g09668 Beta vulgaris HOM05D006331 ORTHO05D008043 2.4e-53 212.6 153 68.0
CAN.G11.28 Capsicum annuum HOM05D006331 ORTHO05D008043 3.1e-53 212.2 153 65.4
Lalb_Chr12g0202951 Lupinus albus HOM05D006331 ORTHO05D008043 3.1e-53 212.2 151 68.9
Nitab4.5_0002100g0110 Nicotiana tabacum HOM05D006331 ORTHO05D008043 4.1e-53 211.8 153 65.4
Oeu042319.1 Olea europaea HOM05D006331 ORTHO05D008043 4.1e-53 211.8 151 67.5
Psat7g043600 Pisum sativum HOM05D006331 ORTHO05D008043 9.1e-53 210.7 154 67.5
SGA_v2.0_scaffold143G35715 Striga asiatica HOM05D006331 ORTHO05D008043 9.1e-53 210.7 150 67.3
Ciclev10000807m.g Citrus clementina HOM05D006331 ORTHO05D008043 1.2e-52 210.3 158 67.1
Phvul.002G275600 Phaseolus vulgaris HOM05D006331 ORTHO05D008043 1.2e-52 210.3 156 65.4
Ca_17611_v3 Cicer arietinum L. HOM05D006331 ORTHO05D008043 3.4e-52 208.8 156 66.0
FvH4_5g00410 Fragaria vesca HOM05D006331 ORTHO05D008043 3.4e-52 208.8 157 66.9
FAN18G4276 Fragaria x ananassa HOM05D006331 ORTHO05D008043 3.4e-52 208.8 157 66.9
THA.LOC104819353 Tarenaya hassleriana HOM05D006331 ORTHO05D008043 3.4e-52 208.8 151 66.2
ECA248G3631 Erigeron canadensis HOM05D002593 ORTHO05D006476 4.5e-52 208.4 150 66.0
AUR62006903 Chenopodium quinoa HOM05D006331 ORTHO05D008043 5.9e-52 208.0 153 65.4
arahy.Tifrunner.gnm1.ann1.9C2QS4 Arachis hypogaea HOM05D006331 ORTHO05D008043 7.7e-52 207.6 155 67.1
AUR62000551 Chenopodium quinoa HOM05D006331 ORTHO05D008043 7.7e-52 207.6 158 63.9
VMungo0251G2607 Vigna mungo HOM05D006331 ORTHO05D008043 7.7e-52 207.6 156 64.7
SalBow7G0499 Salvia bowleyana HOM05D006331 ORTHO05D008043 1.0e-51 207.2 150 66.0
FAN13G1065 Fragaria x ananassa HOM05D006331 ORTHO05D008043 1.7e-51 206.5 157 66.2
Nn5g28340 Nelumbo nucifera HOM05D006331 ORTHO05D008043 1.7e-51 206.5 156 62.2
CARHR204260 Cardamine hirsuta HOM05D006331 ORTHO05D008043 2.2e-51 206.1 151 67.5
Lsat_1_v5_gn_1_81581 Lactuca sativa HOM05D006331 ORTHO05D008043 2.2e-51 206.1 152 64.5
Migut.L00271 Erythranthe guttata HOM05D006331 ORTHO05D008043 5.0e-51 204.9 150 66.0
Migut.L00582 Erythranthe guttata HOM05D006331 ORTHO05D008043 5.0e-51 204.9 150 66.0
Carub.0006s0771 Capsella rubella HOM05D006331 ORTHO05D008043 6.5e-51 204.5 151 67.5
AL6G19490 Arabidopsis lyrata HOM05D006331 ORTHO05D008043 8.5e-51 204.1 151 66.9
DCAR_013180 Daucus carota HOM05D006331 ORTHO05D008043 1.1e-50 203.8 159 62.9
AT5G08740 Arabidopsis thaliana HOM05D006331 ORTHO05D008043 1.4e-50 203.4 151 66.2
MBI06_g01071_MAGBIO Magnolia biondii HOM05D006331 ORTHO05D008043 4.2e-50 201.8 156 63.5
HPP92_013148 Vanilla planifolia HOM05D006331 ORTHO05D008043 7.2e-50 201.1 156 63.5
BraA10t44853Z Brassica rapa HOM05D006331 ORTHO05D008043 1.2e-49 200.3 151 64.2
PSO170G3731 Papaver somniferum HOM05D006331 ORTHO05D008043 1.6e-49 199.9 157 62.4
PSO528G0231 Papaver somniferum HOM05D006331 ORTHO05D008043 2.7e-49 199.1 157 62.4
Aqoxy6G00239 Aquilegia oxysepala HOM05D006331 ORTHO05D008043 3.6e-49 198.7 156 62.2
Sed0028082 Sechium edule HOM05D006331 ORTHO05D008043 3.6e-49 198.7 155 65.2
Thhalv10013258m.g Eutrema salsugineum HOM05D006331 ORTHO05D008043 6.1e-49 198.0 151 64.2
HanXRQChr01g0017771 Helianthus annuus HOM05D006331 ORTHO05D008043 6.1e-49 198.0 152 61.8
unitig_899.g14454 Utricularia gibba HOM05D006331 ORTHO05D008043 6.1e-49 198.0 156 60.9
ATR0665G153 Amborella trichopoda HOM05D006331 ORTHO05D008043 8.0e-49 197.6 152 63.2
BcaB08g37229 Brassica carinata HOM05D006331 ORTHO05D008043 8.0e-49 197.6 152 65.1
A10p28040 Brassica napus HOM05D006331 ORTHO05D008043 8.0e-49 197.6 153 65.4
C09p68240 Brassica napus HOM05D006331 ORTHO05D008043 8.0e-49 197.6 152 65.1
BolC9t59572H Brassica oleracea HOM05D006331 ORTHO05D008043 8.0e-49 197.6 152 65.1
Zm00001eb373110 Zea mays HOM05D006331 ORTHO05D008043 1.8e-48 196.4 151 61.6
ClCG04G001810 Citrullus lanatus HOM05D006331 ORTHO05D008043 3.0e-48 195.7 161 65.2
Os06g0214900 Oryza sativa ssp. japonica HOM05D006331 ORTHO05D008043 3.9e-48 195.3 152 61.2
Sp6g34130 Schrenkiella parvula HOM05D006331 ORTHO05D008043 3.9e-48 195.3 151 64.9
vmacro11024 Vaccinium macrocarpon HOM05D006331 ORTHO05D008043 5.2e-48 194.9 155 65.2
SalBow8G5220 Salvia bowleyana HOM05D006331 ORTHO05D008043 6.7e-48 194.5 137 66.4
Rhsim02G0171900 Rhododendron simsii HOM05D006331 ORTHO05D008043 1.1e-47 193.7 154 65.6
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 1.3e-46 190.3 157 62.4
MELO3C008946.2 Cucumis melo HOM05D006331 ORTHO05D008043 2.2e-46 189.5 157 61.8
Oeu050103.1 Olea europaea HOM05D006331 ORTHO05D008043 3.7e-46 188.7 150 62.0
Aa31LG3G17820 Aethionema arabicum HOM05D006331 ORTHO05D008043 6.3e-46 188.0 153 62.1
SEGI_31237 Sequoiadendron giganteum HOM05D006331 ORTHO05D008043 7.0e-45 184.5 155 56.8
CsaV3_4G030790 Cucumis sativus L. HOM05D006331 ORTHO05D008043 9.1e-45 184.1 162 60.5
Mapoly0183s0011 Marchantia polymorpha HOM05D006331 ORTHO05D008043 5.3e-37 158.3 153 51.0
Pp3c24_18540 Physcomitrium patens HOM05D006331 ORTHO05D008043 1.2e-36 157.1 155 49.7
arahy.Tifrunner.gnm1.ann1.GTTL2Q Arachis hypogaea HOM05D006331 ORTHO05D008043 4.5e-36 155.2 129 61.2
AagrBONN_evm.TU.Sc2ySwM_228.1808 Anthoceros agrestis HOM05D006331 ORTHO05D008043 1.0e-35 154.1 150 51.3
SMO172G0167 Selaginella moellendorffii HOM05D006331 ORTHO05D008043 1.1e-34 150.6 155 51.0
Lsat_1_v5_gn_1_80860 Lactuca sativa HOM05D006331 ORTHO05D008043 6.3e-30 134.8 114 56.1
FAN04G0432 Fragaria x ananassa HOM05D006331 ORTHO05D008043 1.2e-28 130.6 72 80.6
CDE05G2036 Ceratophyllum demersum HOM05D000484 ORTHO05D000346 2.0e-23 113.2 66 77.3
Glyma.08G003033 Glycine max HOM05D006331 ORTHO05D008043 6.3e-22 108.2 105 52.4
Cre16.g671000 Chlamydomonas reinhardtii HOM05D006331 ORTHO05D008043 2.7e-20 102.8 113 46.0
PRCOL_00002259 Prasinoderma coloniale HOM05D006331 ORTHO05D008043 6.1e-17 91.7 128 43.0
MCO15G677 Micromonas commoda HOM05D006331 ORTHO05D008043 7.5e-15 84.7 132 34.8


User provided reference genes

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