Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039372 Camellia sinensis var. sinensis HOM05D007522 ORTHO05D009518 5.7e-26 120.2 62 100.0
CSS0007980 Camellia sinensis var. sinensis HOM05D007522 ORTHO05D009518 2.9e-09 64.7 41 80.5
Rhsim02G0189000 Rhododendron simsii HOM05D007522 ORTHO05D009518 1.4e-08 62.4 41 73.2
vmacro11126 Vaccinium macrocarpon HOM05D007522 ORTHO05D009518 2.4e-08 61.6 41 73.2
CARHR240530 Cardamine hirsuta HOM05D007522 ORTHO05D009518 5.4e-08 60.5 45 68.9
AT4G32560 Arabidopsis thaliana HOM05D007522 ORTHO05D009518 7.1e-08 60.1 42 71.4
Carub.0007s0799 Capsella rubella HOM05D007522 ORTHO05D009518 7.1e-08 60.1 42 71.4
CsaV3_2G031690 Cucumis sativus L. HOM05D007522 ORTHO05D009518 9.2e-08 59.7 41 70.7
Thhalv10025779m.g Eutrema salsugineum HOM05D007522 ORTHO05D009518 9.2e-08 59.7 46 65.2
Actinidia13430 Actinidia chinensis HOM05D007522 ORTHO05D009518 1.6e-07 58.9 41 70.7
Aa31LG4G11730 Aethionema arabicum HOM05D007522 ORTHO05D009518 1.6e-07 58.9 42 69.0
MELO3C011219.2 Cucumis melo HOM05D007522 ORTHO05D009518 1.6e-07 58.9 41 70.7
Sp7g30340 Schrenkiella parvula HOM05D007522 ORTHO05D009518 2.1e-07 58.5 42 69.0
Gohir.A13G204200 Gossypium hirsutum HOM05D007522 ORTHO05D009518 2.7e-07 58.2 46 63.0
Dinv30202 Davidia involucrata HOM05D007522 ORTHO05D009518 3.5e-07 57.8 41 68.3
AL7G19200 Arabidopsis lyrata HOM05D007522 ORTHO05D009518 4.6e-07 57.4 42 66.7
Gohir.D13G209500 Gossypium hirsutum HOM05D007522 ORTHO05D009518 6.0e-07 57.0 46 60.9
Gorai.013G238600 Gossypium raimondii HOM05D007522 ORTHO05D009518 6.0e-07 57.0 46 60.9
Sed0015375 Sechium edule HOM05D007522 ORTHO05D009518 6.0e-07 57.0 41 65.9
GSVIVG01035795001 Vitis vinifera HOM05D007522 ORTHO05D009518 6.0e-07 57.0 41 65.9
BcaC09g52047 Brassica carinata HOM05D007522 ORTHO05D009518 1.0e-06 56.2 42 66.7
A01p05830 Brassica napus HOM05D007522 ORTHO05D009518 1.0e-06 56.2 42 66.7
C01p06400 Brassica napus HOM05D007522 ORTHO05D009518 1.0e-06 56.2 42 66.7
BolC1t00636H Brassica oleracea HOM05D007522 ORTHO05D009518 1.0e-06 56.2 42 66.7
BraA01t00551Z Brassica rapa HOM05D007522 ORTHO05D009518 1.0e-06 56.2 42 66.7
QL12p031480 Quercus lobata HOM05D007522 ORTHO05D009518 1.3e-06 55.8 41 65.9
THA.LOC104819887 Tarenaya hassleriana HOM05D007522 ORTHO05D009518 1.3e-06 55.8 36 75.0
TAR383G0977 Trochodendron aralioides HOM05D007522 ORTHO05D009518 1.3e-06 55.8 46 63.0
Cc11_g01290 Coffea canephora HOM05D007522 ORTHO05D009518 1.7e-06 55.5 41 65.9
Manes.03G065616 Manihot esculenta HOM05D007522 ORTHO05D009518 1.7e-06 55.5 46 60.9
Prupe.1G467900 Prunus persica HOM05D007522 ORTHO05D009518 2.3e-06 55.1 45 60.0
SalBow8G3415 Salvia bowleyana HOM05D007522 ORTHO05D009518 2.3e-06 55.1 46 60.9
Nn8g39310 Nelumbo nucifera HOM05D007522 ORTHO05D009518 3.0e-06 54.7 51 54.9
Ciclev10009234m.g Citrus clementina HOM05D007522 ORTHO05D009518 3.9e-06 54.3 41 63.4
Duzib187G1360 Durio zibethinus HOM05D007522 ORTHO05D009518 3.9e-06 54.3 46 58.7
Thecc.09G145600 Theobroma cacao HOM05D007522 ORTHO05D009518 3.9e-06 54.3 36 72.2
MSTRG.25867 Avicennia marina HOM05D007522 ORTHO05D009518 5.1e-06 53.9 46 58.7
Lsat_1_v5_gn_6_22860 Lactuca sativa HOM05D007522 ORTHO05D009518 5.1e-06 53.9 59 50.8
MD15G1116400 Malus domestica HOM05D007522 ORTHO05D009518 5.1e-06 53.9 45 62.2
arahy.Tifrunner.gnm1.ann1.EE81AI Arachis hypogaea HOM05D007522 ORTHO05D009518 6.6e-06 53.5 51 54.9
FvH4_2g30000 Fragaria vesca HOM05D007522 ORTHO05D009518 6.6e-06 53.5 45 57.8
FAN15G2839 Fragaria x ananassa HOM05D007522 ORTHO05D009518 6.6e-06 53.5 45 57.8
CiPaw.07G218500 Carya illinoinensis HOM05D007522 ORTHO05D009518 8.6e-06 53.1 51 52.9
COL.COLO4_24044 Corchorus olitorius HOM05D007522 ORTHO05D009518 8.6e-06 53.1 36 69.4
Sabra06G0193900 Salix brachista HOM05D007522 ORTHO05D009518 8.6e-06 53.1 46 58.7


User provided reference genes

Program Settings