Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.7e-78 295.4 166 100.0
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.5e-76 289.7 166 97.6
CSS0043643 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.0e-32 144.1 156 66.0
CSS0015684 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 5.7e-28 128.3 165 60.0
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.8e-27 125.9 170 56.5
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 8.2e-27 124.4 170 55.9
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 3.2e-23 112.5 162 51.2
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 3.5e-22 109.0 172 52.9
Potri.005G161700 Populus trichocarpa HOM05D008046 ORTHO05D004477 3.9e-21 105.5 152 54.6
Potri.002G100500 Populus trichocarpa HOM05D008046 ORTHO05D004477 5.1e-21 105.1 154 50.6
Cc10_g06700 Coffea canephora HOM05D008046 ORTHO05D004477 1.5e-20 103.6 179 48.0
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 1.4e-18 97.1 140 54.3
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 9.0e-18 94.4 147 46.3
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 1.2e-17 94.0 173 43.9
Thecc.08G102400 Theobroma cacao HOM05D008046 ORTHO05D004477 1.5e-17 93.6 159 49.1
Duzib116G0877 Durio zibethinus HOM05D008046 ORTHO05D004477 4.5e-17 92.0 182 41.8
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 4.5e-17 92.0 151 49.7
Sabra02G0078700 Salix brachista HOM05D008046 ORTHO05D004477 4.5e-17 92.0 152 48.7
Haze_18268 Corylus avellana HOM05D008046 ORTHO05D004477 5.9e-17 91.7 162 47.5
Haze_18269 Corylus avellana HOM05D008046 ORTHO05D004477 5.9e-17 91.7 162 47.5
Ciclev10002675m.g Citrus clementina HOM05D008046 ORTHO05D004477 1.4e-15 87.0 155 49.0
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 1.4e-15 87.0 149 44.3
COL.COLO4_12009 Corchorus olitorius HOM05D008046 ORTHO05D004477 2.5e-15 86.3 164 47.6
Manes.02G149300 Manihot esculenta HOM05D008046 ORTHO05D004477 3.2e-15 85.9 153 49.7
Oeu048965.1 Olea europaea HOM05D008046 ORTHO05D004477 4.2e-15 85.5 164 44.5
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 5.5e-15 85.1 162 42.6
Duzib041G0197 Durio zibethinus HOM05D008046 ORTHO05D004477 3.6e-14 82.4 163 47.9
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 3.0e-13 79.3 160 37.5
Gohir.A05G265833 Gossypium hirsutum HOM05D008046 ORTHO05D004477 6.7e-13 78.2 140 39.3
Duzib264G0386 Durio zibethinus HOM05D008176 ORTHO05D004477 8.8e-13 77.8 156 37.8
CiPaw.15G046100 Carya illinoinensis HOM05D008046 ORTHO05D004477 1.1e-12 77.4 149 50.3
DCAR_019289 Daucus carota HOM05D008046 ORTHO05D004477 2.5e-12 76.3 171 44.4
CiPaw.16G033000 Carya illinoinensis HOM05D008046 ORTHO05D004477 3.3e-12 75.9 165 44.8
Lsat_1_v5_gn_6_104300 Lactuca sativa HOM05D008046 ORTHO05D004477 4.3e-12 75.5 140 50.0
TWI36G0888 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 5.7e-12 75.1 159 41.5
CiPaw.03G145800 Carya illinoinensis HOM05D008176 ORTHO05D004477 9.7e-12 74.3 130 38.5
Ca_08988_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 9.7e-12 74.3 142 38.7
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 9.7e-12 74.3 137 46.7
Nitab4.5_0012818g0010 Nicotiana tabacum HOM05D008176 ORTHO05D004477 9.7e-12 74.3 142 42.3
Potri.005G072000 Populus trichocarpa HOM05D008176 ORTHO05D004477 9.7e-12 74.3 129 34.9
PGR031G3049 Punica granatum HOM05D008046 ORTHO05D004477 9.7e-12 74.3 173 42.8
Manes.12G129900 Manihot esculenta HOM05D008176 ORTHO05D004477 2.2e-11 73.2 142 40.8
CiPaw.04G103600 Carya illinoinensis HOM05D008176 ORTHO05D004477 2.8e-11 72.8 147 38.8
Manes.18G064000 Manihot esculenta HOM05D008046 ORTHO05D004477 2.8e-11 72.8 110 51.8
Gorai.005G094600 Gossypium raimondii HOM05D008046 ORTHO05D004477 3.7e-11 72.4 139 48.9
Duzib093G0605 Durio zibethinus HOM05D008046 ORTHO05D004477 6.3e-11 71.6 144 45.8
Gohir.D05G267950 Gossypium hirsutum HOM05D008046 ORTHO05D004477 6.3e-11 71.6 142 37.3
Nitab4.5_0000128g0240 Nicotiana tabacum HOM05D008176 ORTHO05D004477 6.3e-11 71.6 143 37.8
Sc26g0000200 Simmondsia chinensis HOM05D013332 ORTHO05D004477 6.3e-11 71.6 133 37.6
COL.COLO4_27295 Corchorus olitorius HOM05D008176 ORTHO05D004477 8.2e-11 71.2 158 39.2
Gorai.009G280100 Gossypium raimondii HOM05D008046 ORTHO05D004477 8.2e-11 71.2 144 36.8
Gohir.A02G076800 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.1e-10 70.9 139 48.2
Gohir.A02G129700 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.1e-10 70.9 149 38.3
Gohir.A01G132600 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.4e-10 70.5 144 36.8
QL06p048130 Quercus lobata HOM05D008176 ORTHO05D004477 1.4e-10 70.5 124 43.5
Haze_24851 Corylus avellana HOM05D008176 ORTHO05D004477 1.8e-10 70.1 132 52.3
Dinv13234 Davidia involucrata HOM05D008176 ORTHO05D004477 1.8e-10 70.1 123 43.1
Lalb_Chr10g0102531 Lupinus albus HOM05D008046 ORTHO05D004477 3.1e-10 69.3 162 38.9
Gohir.D02G084000 Gossypium hirsutum HOM05D008046 ORTHO05D004477 4.1e-10 68.9 137 48.2
Gorai.007G059700 Gossypium raimondii HOM05D008176 ORTHO05D004477 4.1e-10 68.9 157 40.8
Prupe.1G522800 Prunus persica HOM05D018381 ORTHO05D004477 4.1e-10 68.9 160 43.8
Sabra07G0080300 Salix brachista HOM05D008176 ORTHO05D004477 4.1e-10 68.9 126 35.7
PGSC0003DMG400016792 Solanum tuberosum HOM05D008176 ORTHO05D004477 4.1e-10 68.9 130 49.2
CDE05G1898 Ceratophyllum demersum HOM05D000157 ORTHO05D000691 5.3e-10 68.6 138 34.8
Eucgr.B00040 Eucalyptus grandis HOM05D008046 ORTHO05D004477 5.3e-10 68.6 174 35.1
Gohir.D03G040500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 5.3e-10 68.6 159 37.1
Gorai.003G041400 Gossypium raimondii HOM05D008176 ORTHO05D004477 5.3e-10 68.6 149 38.3
Medtr5g064640 Medicago truncatula HOM05D008046 ORTHO05D004477 5.3e-10 68.6 150 38.7
Atru.chr3.1344 Acer truncatum HOM05D008176 ORTHO05D004477 6.9e-10 68.2 141 41.1
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 6.9e-10 68.2 163 34.4
Sc23g0000380 Simmondsia chinensis HOM05D008046 ORTHO05D004477 6.9e-10 68.2 156 33.3
Duzib187G0825 Durio zibethinus HOM05D008176 ORTHO05D004477 9.1e-10 67.8 147 37.4
PGSC0003DMG400016149 Solanum tuberosum HOM05D008176 ORTHO05D004477 9.1e-10 67.8 142 35.2
TPR.G24247 Trifolium pratense HOM05D008046 ORTHO05D004477 1.2e-09 67.4 151 43.0
Gorai.002G141100 Gossypium raimondii HOM05D008046 ORTHO05D004477 1.5e-09 67.0 144 42.4
Medtr3g099490 Medicago truncatula HOM05D008046 ORTHO05D004477 1.5e-09 67.0 134 47.8
Peaxi162Scf00237g00201 Petunia axillaris HOM05D008176 ORTHO05D004477 1.5e-09 67.0 146 37.7
Solyc11g010250.1 Solanum lycopersicum HOM05D008176 ORTHO05D004477 2.0e-09 66.6 142 34.5
Gohir.A11G051100 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.6e-09 66.2 155 38.1
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 2.6e-09 66.2 141 34.8
Lsat_1_v5_gn_1_3180 Lactuca sativa HOM05D008046 ORTHO05D004477 4.5e-09 65.5 131 46.6
Lj1g0004298 Lotus japonicus HOM05D008046 ORTHO05D004477 5.9e-09 65.1 157 38.9
Cfa002600 Carpinus fangiana HOM05D008176 ORTHO05D004477 7.7e-09 64.7 125 50.4
Gohir.D11G054500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.0e-08 64.3 159 40.3
Glyma.04G099200 Glycine max HOM05D008046 ORTHO05D004477 1.3e-08 63.9 147 45.6
SalBow5G1479 Salvia bowleyana HOM05D008046 ORTHO05D004477 1.3e-08 63.9 162 34.6
Solyc04g074680.1 Solanum lycopersicum HOM05D010872 ORTHO05D004477 1.3e-08 63.9 163 32.5
Sopen05g029890 Solanum pennellii HOM05D008176 ORTHO05D004477 2.2e-08 63.2 130 40.0
Glyma.06G100900 Glycine max HOM05D008046 ORTHO05D004477 2.9e-08 62.8 146 49.3
Phvul.001G253900 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 2.9e-08 62.8 124 37.1
VMungo1383G1959 Vigna mungo HOM05D008176 ORTHO05D004477 2.9e-08 62.8 130 39.2
Cpa.g.sc36.179 Carica papaya HOM05D008046 ORTHO05D004477 3.8e-08 62.4 141 48.2
Migut.K01109 Erythranthe guttata HOM05D008046 ORTHO05D004477 3.8e-08 62.4 149 35.6
Glyma.14G177400 Glycine max HOM05D008046 ORTHO05D004477 6.5e-08 61.6 39 74.4
Manes.13G096700 Manihot esculenta HOM05D008176 ORTHO05D004477 8.5e-08 61.2 139 34.5
Phvul.009G032900 Phaseolus vulgaris HOM05D008046 ORTHO05D004477 8.5e-08 61.2 167 41.9
Ciclev10026640m.g Citrus clementina HOM05D008176 ORTHO05D004477 1.1e-07 60.8 160 35.6
Sopen05g029880 Solanum pennellii HOM05D008176 ORTHO05D004477 1.9e-07 60.1 121 41.3
SGA_v2.0_scaffold45G17135 Striga asiatica HOM05D010872 ORTHO05D004477 1.9e-07 60.1 172 30.8
unitig_32.g11784 Utricularia gibba HOM05D008046 ORTHO05D004477 1.9e-07 60.1 143 42.0
MSTRG.3689 Avicennia marina HOM05D008046 ORTHO05D004477 2.5e-07 59.7 184 34.8
Glyma.02G209200 Glycine max HOM05D008046 ORTHO05D004477 2.5e-07 59.7 154 42.9
THA.LOC104816630 Tarenaya hassleriana HOM05D010872 ORTHO05D013672 2.5e-07 59.7 141 43.3
Potri.007G097000 Populus trichocarpa HOM05D008176 ORTHO05D004477 3.2e-07 59.3 125 33.6
THA.LOC104800226 Tarenaya hassleriana HOM05D009138 ORTHO05D011294 3.2e-07 59.3 101 40.6
TPR.G16006 Trifolium pratense HOM05D008176 ORTHO05D004477 3.2e-07 59.3 141 34.8
Glyma.11G242100 Glycine max HOM05D008176 ORTHO05D004477 4.2e-07 58.9 133 36.1
THA.LOC104809723 Tarenaya hassleriana HOM05D009138 ORTHO05D011294 4.2e-07 58.9 88 54.5
Glyma.18G015000 Glycine max HOM05D008176 ORTHO05D004477 7.2e-07 58.2 127 36.2
Lj4g0008028 Lotus japonicus HOM05D008176 ORTHO05D004477 9.4e-07 57.8 137 34.3
TWI53G0271 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 9.4e-07 57.8 152 36.2
BcaB03g13666 Brassica carinata HOM05D010872 ORTHO05D013672 1.2e-06 57.4 138 34.1
PGSC0003DMG400016791 Solanum tuberosum HOM05D008176 ORTHO05D004477 1.2e-06 57.4 122 41.8
VMungo0647G1155 Vigna mungo HOM05D008046 ORTHO05D004477 1.2e-06 57.4 153 40.5
Medtr3g086830 Medicago truncatula HOM05D008176 ORTHO05D004477 1.6e-06 57.0 138 35.5
Phvul.008G176900 Phaseolus vulgaris HOM05D008046 ORTHO05D004477 1.6e-06 57.0 46 63.0
PGSC0003DMG400017769 Solanum tuberosum HOM05D059644 ORTHO05D004477 1.6e-06 57.0 140 40.7
Aa31LG6G8650 Aethionema arabicum HOM05D010872 ORTHO05D013672 2.1e-06 56.6 50 54.0
Sabra05G0058900 Salix brachista HOM05D008176 ORTHO05D004477 2.1e-06 56.6 131 42.0
Hma1.2p1_0019F.1_g013800 Hydrangea macrophylla HOM05D013332 ORTHO05D004477 2.7e-06 56.2 154 39.0
Lalb_Chr23g0270371 Lupinus albus HOM05D008046 ORTHO05D004477 2.7e-06 56.2 138 40.6
EL10Ac1g01145 Beta vulgaris HOM05D008046 ORTHO05D004477 3.6e-06 55.8 158 31.6
A05p23830 Brassica napus HOM05D010872 ORTHO05D013672 3.6e-06 55.8 37 64.9
BraA05t21254Z Brassica rapa HOM05D010872 ORTHO05D013672 3.6e-06 55.8 37 64.9
Sopen04g029650 Solanum pennellii HOM05D010872 ORTHO05D013672 3.6e-06 55.8 42 59.5
FAN23G0907 Fragaria x ananassa HOM05D013332 ORTHO05D004477 4.7e-06 55.5 165 34.5
Medtr8g089920 Medicago truncatula HOM05D008176 ORTHO05D004477 4.7e-06 55.5 148 33.1
RcHm_v2.0_Chr2g0112381 Rosa chinensis HOM05D013332 ORTHO05D004477 4.7e-06 55.5 149 35.6
Psat0s5249g0040 Pisum sativum HOM05D008046 ORTHO05D004477 6.1e-06 55.1 124 46.0
RcHm_v2.0_Chr7g0242321 Rosa chinensis HOM05D018381 ORTHO05D004477 6.1e-06 55.1 181 38.7
AT1G35210 Arabidopsis thaliana HOM05D010872 ORTHO05D013672 7.9e-06 54.7 43 58.1
Ca_16509_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 7.9e-06 54.7 140 34.3
FvH4_5g36590 Fragaria vesca HOM05D018381 ORTHO05D004477 7.9e-06 54.7 48 52.1
Psat7g056440 Pisum sativum HOM05D008176 ORTHO05D004477 7.9e-06 54.7 134 32.1
Sed0003502 Sechium edule HOM05D010872 ORTHO05D013672 7.9e-06 54.7 137 35.8


User provided reference genes

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