Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1699.5 868 100.0
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1699.1 868 99.9
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 0.0e+00 1380.9 870 81.6
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1352.0 825 84.2
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 0.0e+00 1275.0 866 74.2
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 0.0e+00 1232.6 866 72.5
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 0.0e+00 1231.5 871 74.1
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 0.0e+00 1228.0 868 73.4
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 0.0e+00 1214.1 868 71.5
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 0.0e+00 1214.1 868 71.4
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 0.0e+00 1205.7 868 72.0
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 0.0e+00 1203.0 885 71.9
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1194.9 869 70.8
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 0.0e+00 1193.7 869 70.8
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1188.3 869 70.9
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1187.2 869 70.8
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 0.0e+00 1186.0 870 70.8
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 0.0e+00 1185.6 868 71.0
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 0.0e+00 1185.2 859 70.8
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 0.0e+00 1178.3 870 70.2
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 0.0e+00 1175.6 863 70.2
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 0.0e+00 1172.1 864 70.3
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1170.6 869 70.2
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 0.0e+00 1170.2 868 70.5
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 0.0e+00 1169.8 864 70.3
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 0.0e+00 1169.5 849 70.9
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 0.0e+00 1168.7 868 70.0
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 0.0e+00 1167.1 870 69.8
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 0.0e+00 1164.4 853 70.2
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 0.0e+00 1157.5 863 69.3
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 0.0e+00 1155.6 869 69.6
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 0.0e+00 1154.4 871 68.2
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 0.0e+00 1152.5 869 69.5
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 0.0e+00 1150.2 868 70.9
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1150.2 868 70.4
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 0.0e+00 1149.0 868 69.2
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1148.3 868 69.1
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1144.8 868 69.9
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 0.0e+00 1144.4 868 67.6
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 0.0e+00 1143.3 877 68.2
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1141.3 869 69.7
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1141.3 865 69.5
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 0.0e+00 1139.4 877 68.3
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 0.0e+00 1138.3 868 69.4
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1137.1 868 68.4
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 0.0e+00 1129.8 865 68.4
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 0.0e+00 1125.5 868 68.0
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 0.0e+00 1122.8 866 67.0
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 0.0e+00 1120.9 869 67.9
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 0.0e+00 1117.1 871 68.0
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 0.0e+00 1114.8 853 67.9
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 0.0e+00 1110.5 869 68.4
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 0.0e+00 1108.2 871 65.6
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 0.0e+00 1106.3 871 65.7
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 0.0e+00 1104.4 868 67.9
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 0.0e+00 1103.2 875 67.7
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 0.0e+00 1098.6 874 65.6
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 0.0e+00 1092.4 869 66.6
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 0.0e+00 1088.2 869 66.9
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 0.0e+00 1076.6 877 64.9
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 7.7e-310 1067.0 871 64.5
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 6.5e-309 1063.9 805 69.2
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 4.2e-308 1061.2 875 64.2
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 1.8e-306 1055.8 869 63.2
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 2.0e-305 1052.4 868 63.8
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 1.4e-303 1046.2 879 62.3
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 1.1e-300 1036.6 872 63.3
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 4.2e-300 1034.6 811 68.4
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 1.4e-298 1029.6 871 63.3
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 5.2e-298 1027.7 876 63.1
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 2.0e-297 1025.8 873 63.2
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 1.7e-296 1022.7 868 63.6
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 2.2e-296 1022.3 872 62.8
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 7.0e-295 1017.3 873 62.9
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 9.1e-295 1016.9 873 62.7
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 1.0e-293 1013.4 874 62.4
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 1.3e-293 1013.1 917 60.5
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 1.3e-293 1013.1 874 62.1
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 1.5e-292 1009.6 856 63.2
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 1.0e-290 1003.4 872 62.2
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 5.2e-290 1001.1 808 65.0
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 3.3e-289 998.4 874 61.8
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 4.2e-284 981.5 755 68.3
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 3.0e-282 975.3 811 65.7
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 1.1e-279 966.8 872 59.7
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 1.8e-279 966.1 755 67.7
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 9.1e-279 963.8 810 64.1
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 7.2e-276 954.1 852 60.9
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 1.5e-273 946.4 832 61.4
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 2.5e-268 929.1 869 59.3
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 4.3e-268 928.3 870 56.4
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 1.2e-257 893.6 857 56.7
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 9.2e-255 884.0 691 69.2
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 1.2e-249 867.1 870 53.2
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 3.3e-244 849.0 872 52.5
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 4.7e-243 845.1 651 68.2
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 2.4e-231 806.2 859 52.9
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 5.1e-205 718.8 754 51.2
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.7e-184 650.6 526 65.2
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 1.3e-168 597.8 741 47.1
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 2.8e-158 563.5 438 66.2
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 9.2e-138 495.4 845 37.3
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 6.0e-137 492.7 881 37.0
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 1.5e-135 488.0 856 38.8
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 1.3e-104 385.2 327 63.3
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 8.2e-94 349.4 981 30.0
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 1.9e-58 231.9 189 62.4
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 5.6e-34 150.6 100 76.0
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 2.3e-27 128.6 86 69.8
VMungo1127G1894 Vigna mungo HOM05D006510 ORTHO05D008171 3.5e-20 104.8 97 56.7
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 1.3e-19 102.8 592 21.1
Cpa.g.c45723 Carica papaya HOM05D006510 ORTHO05D008171 1.9e-18 99.0 63 73.0
Hund07777 Selenicereus undatus HOM05D006510 ORTHO05D008171 1.4e-16 92.8 66 69.7
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 6.8e-16 90.5 57 73.7
unitig_46.g18270 Utricularia gibba HOM05D006510 ORTHO05D008171 8.9e-16 90.1 65 66.2
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 7.5e-15 87.0 591 23.2
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 9.9e-15 86.7 57 70.2
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 4.9e-14 84.3 57 64.9
BcaB01g03423 Brassica carinata HOM05D001990 ORTHO05D002033 5.6e-10 70.9 86 47.7
Lsat_1_v5_gn_4_67501 Lactuca sativa HOM05D001373 ORTHO05D001330 4.0e-08 64.7 44 68.2
arahy.Tifrunner.gnm1.ann1.JPYC3C Arachis hypogaea HOM05D006510 ORTHO05D008171 1.2e-07 63.2 42 66.7
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 1.2e-07 63.2 101 45.5
Lsat_1_v5_gn_9_51101 Lactuca sativa HOM05D003114 ORTHO05D003519 4.4e-07 61.2 47 61.7
SEGI_32298 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 2.2e-06 58.9 51 51.0


User provided reference genes

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