Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.7e-207 725.7 355 100.0
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.6e-176 622.9 304 98.7
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 7.8e-176 620.5 355 83.9
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 8.9e-172 607.1 354 81.6
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 6.0e-168 594.3 355 79.4
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 5.6e-166 587.8 355 78.0
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 5.6e-166 587.8 354 78.5
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 9.5e-166 587.0 351 78.1
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.7e-165 584.7 354 80.2
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 1.8e-164 582.8 354 77.7
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.5e-163 579.7 350 77.7
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.0e-163 579.3 304 92.4
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 3.4e-163 578.6 356 77.2
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 5.8e-163 577.8 351 78.1
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.7e-162 576.2 355 77.5
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 2.2e-162 575.9 349 77.4
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 2.9e-162 575.5 350 75.4
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 4.9e-162 574.7 351 77.8
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 6.4e-162 574.3 348 84.8
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 1.1e-161 573.5 351 76.9
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 1.4e-161 573.2 351 78.1
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 2.4e-161 572.4 382 71.5
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 1.6e-160 569.7 349 77.7
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 3.5e-160 568.5 355 76.3
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 6.0e-160 567.8 353 76.8
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.0e-159 567.0 355 76.1
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 2.3e-159 565.8 350 76.6
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 3.0e-159 565.5 349 77.1
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.9e-159 565.1 351 75.8
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 3.9e-159 565.1 351 75.8
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 1.5e-158 563.1 326 82.8
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 1.9e-158 562.8 351 75.2
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 2.5e-158 562.4 353 76.8
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 7.3e-158 560.8 351 77.2
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 4.7e-157 558.1 351 75.8
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 6.2e-157 557.8 353 75.6
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 8.1e-157 557.4 348 74.7
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 8.1e-157 557.4 349 76.2
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 3.1e-156 555.4 354 73.7
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 3.1e-156 555.4 354 73.7
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 4.0e-156 555.1 355 74.4
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 6.8e-156 554.3 353 76.2
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 6.8e-156 554.3 349 75.9
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 2.6e-155 552.4 355 75.8
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 3.4e-155 552.0 354 73.7
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 1.3e-154 550.1 353 73.9
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 6.4e-154 547.7 359 73.0
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 6.4e-154 547.7 351 72.6
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 8.3e-154 547.4 346 74.9
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.4e-153 546.6 351 72.1
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 2.4e-153 545.8 354 74.3
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 3.2e-153 545.4 376 69.9
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 1.2e-152 543.5 353 74.8
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 3.5e-152 542.0 353 74.8
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 1.1e-150 537.0 349 72.5
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 5.6e-150 534.6 352 73.6
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 1.2e-149 533.5 353 73.1
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 1.2e-149 533.5 357 73.9
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 1.6e-149 533.1 350 70.9
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.6e-149 533.1 412 64.6
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 2.1e-149 532.7 348 73.3
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 2.8e-149 532.3 333 73.6
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 1.1e-148 530.4 352 72.7
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 2.4e-148 529.3 358 69.3
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 6.8e-148 527.7 351 72.1
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 1.2e-147 526.9 350 72.6
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 7.6e-147 524.2 350 70.0
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 9.9e-147 523.9 303 79.5
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 9.9e-147 523.9 351 71.8
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 4.9e-146 521.5 341 73.0
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 8.4e-146 520.8 350 69.7
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 2.4e-145 519.2 356 69.1
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.4e-145 519.2 360 72.2
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 9.2e-145 517.3 305 79.7
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 1.2e-144 516.9 375 66.7
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 1.2e-144 516.9 349 72.5
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.6e-144 516.5 352 72.2
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 2.1e-144 516.2 351 69.5
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 2.1e-144 516.2 280 85.7
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 3.5e-144 515.4 349 71.1
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 3.5e-144 515.4 350 70.6
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 1.1e-142 510.4 354 67.8
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 1.1e-142 510.4 351 68.4
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 1.6e-141 506.5 350 68.0
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 1.6e-141 506.5 354 67.5
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 1.6e-141 506.5 349 71.1
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 2.8e-141 505.8 356 68.3
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 2.8e-141 505.8 359 69.4
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 2.8e-141 505.8 345 68.7
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 4.7e-141 505.0 365 67.9
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 8.1e-141 504.2 352 67.9
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 4.0e-140 501.9 334 72.5
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.0e-139 499.6 349 69.6
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 3.4e-139 498.8 356 68.3
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 4.4e-139 498.4 316 75.9
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 4.4e-139 498.4 346 68.2
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 5.8e-139 498.0 345 67.5
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 2.9e-138 495.7 347 66.6
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 4.9e-138 495.0 349 65.9
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.9e-137 493.0 356 68.3
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 3.5e-136 488.8 345 65.8
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 8.7e-135 484.2 349 66.2
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 3.3e-134 482.3 356 69.1
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 5.3e-132 474.9 312 71.8
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 1.2e-131 473.8 331 71.3
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 4.5e-131 471.9 357 65.0
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 5.8e-131 471.5 354 63.3
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 1.7e-130 469.9 329 69.0
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 2.2e-130 469.5 322 68.9
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 2.2e-130 469.5 346 65.9
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 8.4e-130 467.6 351 65.2
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 1.1e-129 467.2 304 72.7
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 2.3e-127 459.5 263 81.4
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 3.9e-119 432.2 322 64.0
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 1.6e-117 426.8 351 61.8
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 5.3e-116 421.8 246 80.9
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 1.0e-111 407.5 327 62.1
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 6.7e-111 404.8 240 80.4
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 1.9e-110 403.3 250 72.4
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 2.8e-109 399.4 221 85.5
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.2e-107 394.0 380 53.7
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.0e-106 391.0 255 72.9
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.9e-106 389.4 378 55.0
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 5.0e-106 388.7 221 86.0
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 3.2e-105 386.0 324 60.8
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 2.0e-102 376.7 241 73.0
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 2.4e-100 369.8 244 70.5
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 4.1e-100 369.0 376 50.3
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 1.5e-99 367.1 349 54.4
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 2.6e-99 366.3 379 54.4
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.9e-97 360.1 405 47.9
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 2.5e-97 359.8 292 62.7
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 9.4e-97 357.8 295 59.0
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 3.0e-95 352.8 210 77.6
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 6.3e-93 345.1 194 87.6
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 1.1e-92 344.4 239 68.2
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 1.7e-90 337.0 361 47.4
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 1.4e-87 327.4 285 58.9
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 2.3e-87 326.6 355 48.5
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.7e-85 320.5 194 83.0
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.1e-84 317.8 230 68.7
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 3.1e-84 316.2 304 56.2
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 8.5e-82 308.1 194 76.3
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 1.3e-77 294.3 280 49.6
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 1.7e-77 293.9 192 69.3
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 5.3e-76 288.9 330 50.3
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.6e-67 260.8 194 67.5
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 1.4e-60 237.7 134 82.1
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 8.0e-56 221.9 159 67.3
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 2.5e-49 200.3 127 71.7
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 7.3e-49 198.7 334 40.1
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 1.4e-44 184.5 328 41.2
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 7.1e-44 182.2 346 31.8
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 2.1e-43 180.6 210 52.9
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 3.5e-43 179.9 109 77.1
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 1.6e-40 171.0 223 38.6
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 8.1e-40 168.7 156 52.6
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 5.8e-38 162.5 302 29.1
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 2.4e-36 157.1 89 78.7
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.9e-25 120.9 219 31.5
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 1.7e-21 107.8 76 69.7
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 6.6e-18 95.9 69 60.9
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 1.5e-17 94.7 69 60.9
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 2.5e-17 94.0 68 61.8
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 6.2e-16 89.4 74 59.5
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.8e-15 87.8 67 61.2
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 4.2e-12 76.6 49 73.5
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.5e-09 67.4 78 50.0
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.6e-08 64.7 40 67.5
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 8.1e-08 62.4 55 50.9
MD15G1096200 Malus domestica HOM05D004081 ORTHO05D025646 5.3e-07 59.7 46 65.2
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 6.9e-07 59.3 43 58.1
Hund03407 Selenicereus undatus HOM05D004081 ORTHO05D025646 7.6e-06 55.8 48 54.2


User provided reference genes

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