Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.6e-77 290.4 147 100.0
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.4e-76 287.0 147 98.0
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.7e-74 282.0 147 95.9
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.7e-74 282.0 147 95.9
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.7e-68 262.7 147 87.8
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 2.2e-68 262.3 147 87.8
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.8e-65 252.7 147 86.4
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 3.9e-65 251.5 146 82.9
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 5.1e-65 251.1 147 84.4
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.7e-64 247.7 132 92.4
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 2.2e-63 245.7 147 80.3
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 6.3e-63 244.2 141 85.1
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.1e-62 243.4 145 80.7
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.1e-62 241.9 147 81.0
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 6.9e-62 240.7 147 79.6
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 6.9e-62 240.7 147 79.6
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 1.2e-61 240.0 147 78.9
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.5e-61 239.6 146 79.5
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.6e-61 238.8 131 91.6
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 1.0e-60 236.9 147 76.2
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.7e-60 236.1 147 78.2
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.2e-60 235.7 146 78.1
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 2.9e-60 235.3 146 76.7
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 3.8e-60 235.0 147 77.6
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 3.8e-60 235.0 147 78.2
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 6.5e-60 234.2 147 77.6
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 6.5e-60 234.2 147 74.1
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.1e-59 233.4 147 77.6
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 1.9e-59 232.6 147 73.5
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.9e-59 232.6 147 75.5
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.5e-59 232.3 147 76.2
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.5e-59 232.3 147 76.2
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 2.5e-59 232.3 147 76.2
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 3.2e-59 231.9 147 73.5
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 7.2e-59 230.7 147 75.5
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.7e-58 228.8 147 75.5
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.7e-58 228.8 147 74.8
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 3.6e-58 228.4 147 74.8
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 4.6e-58 228.0 145 73.8
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 4.6e-58 228.0 147 72.8
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 4.6e-58 228.0 147 72.8
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.6e-58 228.0 147 83.7
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 4.6e-58 228.0 147 74.8
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 6.1e-58 227.6 147 74.8
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 7.9e-58 227.3 147 71.4
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 7.9e-58 227.3 146 74.7
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 7.9e-58 227.3 129 84.5
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 1.4e-57 226.5 147 74.1
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 1.4e-57 226.5 147 74.1
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 1.4e-57 226.5 147 74.1
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 1.4e-57 226.5 147 74.1
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 1.4e-57 226.5 146 75.3
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.8e-57 226.1 147 73.5
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 1.8e-57 226.1 147 74.1
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 1.8e-57 226.1 147 74.1
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.8e-57 226.1 147 72.8
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.3e-57 225.7 147 72.8
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 3.0e-57 225.3 147 73.5
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.0e-57 225.3 147 72.8
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 3.9e-57 224.9 147 73.5
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 3.9e-57 224.9 147 72.1
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 5.1e-57 224.6 147 72.8
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 6.7e-57 224.2 147 72.8
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 6.7e-57 224.2 147 72.1
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 6.7e-57 224.2 147 73.5
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 6.7e-57 224.2 147 73.5
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 6.7e-57 224.2 147 73.5
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 8.8e-57 223.8 147 72.1
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 8.8e-57 223.8 147 72.8
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 8.8e-57 223.8 147 73.5
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 8.8e-57 223.8 147 73.5
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 1.1e-56 223.4 147 72.8
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.1e-56 223.4 147 75.5
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 1.1e-56 223.4 147 70.7
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.1e-56 223.4 147 73.5
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 1.1e-56 223.4 147 72.1
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 1.5e-56 223.0 147 74.1
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.9e-56 222.6 147 74.1
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 1.9e-56 222.6 147 72.1
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.9e-56 222.6 147 71.4
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 2.5e-56 222.2 147 70.7
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.3e-56 221.9 147 72.1
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 4.3e-56 221.5 147 73.5
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 5.7e-56 221.1 147 72.1
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 5.7e-56 221.1 147 70.7
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 7.4e-56 220.7 147 72.1
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 7.4e-56 220.7 147 70.7
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 9.7e-56 220.3 147 72.1
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 9.7e-56 220.3 147 72.1
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.3e-55 219.9 147 72.1
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 1.3e-55 219.9 147 72.1
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.7e-55 219.5 147 70.1
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 1.7e-55 219.5 147 71.4
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 2.8e-55 218.8 147 70.7
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 3.7e-55 218.4 147 67.3
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 4.8e-55 218.0 147 71.4
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 8.2e-55 217.2 147 72.1
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 1.4e-54 216.5 147 69.4
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 2.4e-54 215.7 147 68.7
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 3.1e-54 215.3 147 69.4
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.1e-54 215.3 147 70.1
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 3.1e-54 215.3 147 70.1
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 3.1e-54 215.3 147 70.1
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 5.3e-54 214.5 147 70.1
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 6.9e-54 214.2 147 70.1
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 6.9e-54 214.2 135 77.8
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 6.9e-54 214.2 147 69.4
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 6.9e-54 214.2 147 68.7
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 9.1e-54 213.8 147 67.3
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.2e-53 213.4 147 70.1
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.5e-53 213.0 146 67.8
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.0e-53 212.6 137 82.5
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 2.6e-53 212.2 147 67.3
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 2.6e-53 212.2 147 67.3
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 2.6e-53 212.2 147 68.7
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 3.4e-53 211.8 147 70.7
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 4.5e-53 211.5 147 67.3
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 4.5e-53 211.5 147 70.1
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 5.9e-53 211.1 145 68.3
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 5.9e-53 211.1 147 68.0
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 7.7e-53 210.7 147 66.0
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.7e-52 209.5 147 69.4
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 8.5e-52 207.2 146 67.1
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 8.5e-52 207.2 147 68.7
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 1.4e-51 206.5 147 63.9
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.4e-51 206.5 147 68.0
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 5.5e-51 204.5 147 64.6
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 4.7e-50 201.4 137 70.1
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 4.7e-50 201.4 146 63.7
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 1.5e-48 196.4 136 70.6
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.3e-47 193.4 147 63.3
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.2e-47 192.6 132 72.7
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 2.2e-47 192.6 147 65.3
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 2.8e-47 192.2 147 62.6
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 4.8e-47 191.4 129 69.0
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 1.8e-46 189.5 147 63.3
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 3.4e-45 185.3 140 62.1
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 6.5e-44 181.0 128 68.0
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.4e-43 179.9 112 74.1
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.2e-43 178.7 129 64.3
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 2.7e-42 175.6 128 62.5
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.0e-41 172.2 131 63.4
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 7.4e-40 167.5 128 68.8
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 6.5e-36 154.5 106 67.0
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.3e-33 146.0 76 90.8
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 1.4e-30 136.7 146 45.9
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 3.2e-27 125.6 147 42.2
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 1.2e-26 123.6 142 43.0
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 6.1e-26 121.3 134 45.5
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 1.2e-24 117.1 144 42.4
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 2.0e-24 116.3 129 49.6
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 4.2e-19 98.6 86 55.8
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 4.4e-16 88.6 149 34.2
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 3.6e-10 68.9 55 56.4


User provided reference genes

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