Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 4.6e-249 864.0 409 100.0
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.5e-202 708.8 448 78.1
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 8.9e-200 700.3 449 75.3
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.0e-195 685.3 450 77.6
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 3.3e-194 681.8 446 74.4
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 3.6e-193 678.3 450 73.3
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 1.8e-192 676.0 451 73.2
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 3.4e-191 671.8 451 72.3
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 1.3e-190 669.8 441 73.5
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 2.2e-190 669.1 448 73.0
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 3.7e-190 668.3 454 72.9
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 4.9e-190 667.9 448 72.1
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 4.9e-190 667.9 448 73.2
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 6.4e-190 667.5 451 73.2
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 6.4e-190 667.5 451 73.2
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 8.3e-190 667.2 451 72.5
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 1.4e-189 666.4 451 72.9
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 1.9e-189 666.0 451 71.4
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.2e-189 665.2 448 72.8
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 7.0e-189 664.1 453 72.0
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 1.2e-188 663.3 445 72.1
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 7.8e-188 660.6 448 70.8
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 1.0e-187 660.2 453 71.5
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 1.3e-187 659.8 453 72.0
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 2.3e-187 659.1 453 71.3
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 2.3e-187 659.1 447 70.7
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 3.0e-187 658.7 451 71.0
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 3.9e-187 658.3 448 70.1
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 3.9e-187 658.3 447 70.7
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 3.9e-187 658.3 445 71.2
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 3.9e-187 658.3 451 71.0
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 3.9e-187 658.3 451 70.5
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 6.6e-187 657.5 453 70.9
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 9.5e-186 653.7 453 70.4
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 1.6e-185 652.9 443 72.0
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 6.2e-185 651.0 523 63.7
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 6.2e-185 651.0 445 70.6
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 6.2e-185 651.0 453 70.2
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 6.2e-185 651.0 445 70.1
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 8.1e-185 650.6 448 70.5
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 8.1e-185 650.6 446 69.7
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 1.4e-184 649.8 449 71.0
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.4e-184 649.8 453 71.3
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 4.0e-184 648.3 451 69.0
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.2e-183 646.7 453 68.9
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 1.5e-183 646.4 443 71.6
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 2.0e-183 646.0 452 70.8
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.0e-183 646.0 448 69.4
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 3.4e-183 645.2 443 70.7
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 4.4e-183 644.8 446 70.0
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 5.8e-183 644.4 443 69.8
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 5.8e-183 644.4 443 70.0
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 9.9e-183 643.7 448 69.2
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.3e-182 643.3 451 68.7
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 1.3e-182 643.3 451 69.8
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 1.3e-182 643.3 448 70.8
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.9e-182 642.1 458 68.3
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 2.9e-182 642.1 472 66.7
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 8.3e-182 640.6 448 69.6
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 1.1e-181 640.2 443 69.5
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.4e-181 639.8 453 70.0
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 3.2e-181 638.6 452 70.1
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 3.2e-181 638.6 451 69.6
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 4.1e-181 638.3 448 69.4
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 1.6e-180 636.3 444 68.7
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 1.0e-179 633.6 446 68.8
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.7e-179 632.9 447 68.9
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 3.0e-179 632.1 440 69.1
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 3.9e-179 631.7 451 68.7
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 8.6e-179 630.6 446 68.6
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.9e-178 629.4 451 69.0
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.9e-178 629.4 448 70.8
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 2.5e-178 629.0 445 69.2
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 3.3e-178 628.6 448 68.8
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 4.3e-178 628.2 442 70.1
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 9.5e-178 627.1 445 69.4
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.6e-177 626.3 506 62.3
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 3.6e-177 625.2 447 68.2
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 3.6e-177 625.2 446 67.9
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 4.7e-177 624.8 449 67.9
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 6.2e-177 624.4 446 67.9
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 8.1e-177 624.0 448 68.1
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 8.1e-177 624.0 451 68.7
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 8.9e-176 620.5 451 67.4
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 1.5e-175 619.8 451 67.2
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 2.0e-175 619.4 446 67.3
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 2.6e-175 619.0 446 67.7
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 2.6e-175 619.0 446 67.5
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 2.6e-175 619.0 446 67.7
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 5.8e-175 617.8 447 68.2
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 9.9e-175 617.1 451 66.7
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 2.2e-174 615.9 495 63.4
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 2.9e-174 615.5 448 67.9
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 5.4e-173 611.3 484 64.0
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 7.1e-173 610.9 452 67.0
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 9.2e-173 610.5 446 65.5
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 1.2e-172 610.1 446 66.1
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 2.1e-172 609.4 451 65.9
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 2.1e-172 609.4 451 66.3
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 2.7e-172 609.0 452 66.6
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 3.5e-172 608.6 447 66.7
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 1.3e-171 606.7 452 66.2
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 1.7e-171 606.3 452 66.2
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 1.7e-171 606.3 452 66.2
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 6.9e-168 594.3 441 68.0
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 1.2e-167 593.6 432 68.1
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 4.4e-167 591.7 442 67.6
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 6.6e-163 577.8 412 68.9
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 3.3e-162 575.5 446 62.6
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 4.3e-162 575.1 451 64.1
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 1.4e-160 570.1 434 64.1
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 3.1e-160 568.9 446 64.1
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 1.9e-157 559.7 371 72.5
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.9e-154 549.7 371 70.1
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.5e-149 532.7 448 59.6
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 6.0e-148 528.1 444 59.7
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.0e-147 527.3 371 68.5
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 3.3e-146 522.3 444 58.6
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.2e-137 493.0 447 60.9
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.4e-133 480.3 333 70.9
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 8.5e-126 454.5 341 66.3
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 9.1e-120 434.5 316 65.8
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 8.0e-116 421.4 294 71.1
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 1.1e-114 417.5 439 52.8
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.8e-112 410.2 300 67.3
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 1.1e-109 401.0 255 73.7
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 2.8e-105 386.3 455 50.1
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 6.1e-100 368.6 272 65.4
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 4.0e-91 339.3 372 49.2
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.4e-88 328.9 260 60.0
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 2.8e-84 316.6 199 72.9
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 1.2e-63 248.1 157 74.5
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 4.9e-57 226.1 150 70.0
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 7.8e-55 218.8 153 64.1
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 4.3e-53 213.0 193 57.0
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.6e-53 212.6 156 64.7
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 9.6e-53 211.8 148 67.6
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.8e-51 207.6 261 44.1
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 4.0e-51 206.5 145 66.9
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.4e-48 196.1 146 65.1
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 1.9e-45 187.6 105 81.0
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 6.9e-43 179.1 103 77.7
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 6.2e-36 156.0 124 59.7
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 1.1e-32 145.2 108 67.6
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 3.2e-32 143.7 112 59.8
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 1.5e-26 124.8 135 51.1
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.2e-23 115.2 55 92.7
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.3e-22 111.7 58 82.8
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 5.1e-22 109.8 63 76.2
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 9.7e-21 105.5 60 76.7
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 1.8e-19 101.3 55 81.8
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 4.5e-18 96.7 52 80.8
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 1.0e-17 95.5 55 74.5
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 1.1e-16 92.0 61 65.6
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.9e-16 91.3 65 66.2
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 2.5e-16 90.9 55 70.9
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 7.2e-16 89.4 63 61.9
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.2e-15 88.6 67 59.7
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 8.8e-14 82.4 44 77.3
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 2.8e-12 77.4 55 60.0
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 1.0e-06 58.9 35 74.3


User provided reference genes

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