Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039262 Camellia sinensis var. sinensis HOM05D006275 ORTHO05D007839 6.1e-67 257.3 126 100.0
CSS0002686 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 1.7e-61 239.2 140 87.1
CSS0030866 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 1.7e-61 239.2 140 87.1
GSVIVG01009748001 Vitis vinifera HOM05D006275 ORTHO05D007839 1.1e-47 193.4 136 73.5
Dinv39443 Davidia involucrata HOM05D006275 ORTHO05D007839 7.0e-47 190.7 137 70.1
Gohir.D05G195400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 2.8e-43 178.7 138 67.4
Oeu002824.1 Olea europaea HOM05D006275 ORTHO05D007839 8.1e-43 177.2 136 68.4
Prupe.1G376100 Prunus persica HOM05D006275 ORTHO05D007839 1.1e-42 176.8 139 68.3
Gohir.A05G192200 Gossypium hirsutum HOM05D006275 ORTHO05D007839 1.4e-42 176.4 138 66.7
Gorai.009G200300 Gossypium raimondii HOM05D006275 ORTHO05D007839 2.3e-42 175.6 138 66.7
Thecc.08G031000 Theobroma cacao HOM05D006275 ORTHO05D007839 2.3e-42 175.6 139 66.2
Sed0006872 Sechium edule HOM05D006275 ORTHO05D007839 6.8e-42 174.1 136 67.6
Sc02g0005820 Simmondsia chinensis HOM05D006275 ORTHO05D007839 6.8e-42 174.1 136 64.0
Ciclev10002669m.g Citrus clementina HOM05D006275 ORTHO05D007839 8.9e-42 173.7 140 65.0
Duzib093G0437 Durio zibethinus HOM05D006275 ORTHO05D007839 8.9e-42 173.7 139 64.7
Oeu047769.1 Olea europaea HOM05D006275 ORTHO05D007839 8.9e-42 173.7 136 67.6
Migut.J00614 Erythranthe guttata HOM05D006275 ORTHO05D007839 1.2e-41 173.3 138 65.2
Atru.chr13.432 Acer truncatum HOM05D006275 ORTHO05D007839 1.5e-41 172.9 97 82.5
MD15G1023800 Malus domestica HOM05D006275 ORTHO05D007839 1.5e-41 172.9 142 62.7
Solyc04g080630.4 Solanum lycopersicum HOM05D006275 ORTHO05D007839 2.6e-41 172.2 129 67.4
Cfa013858 Carpinus fangiana HOM05D006275 ORTHO05D007839 4.4e-41 171.4 97 80.4
TAR628G1199 Trochodendron aralioides HOM05D006275 ORTHO05D007839 4.4e-41 171.4 142 66.2
CANSAT56G0974 Cannabis sativa HOM05D006275 ORTHO05D007839 5.8e-41 171.0 133 68.4
Cc09_g08950 Coffea canephora HOM05D006275 ORTHO05D007839 7.5e-41 170.6 134 65.7
COL.COLO4_26271 Corchorus olitorius HOM05D006275 ORTHO05D007839 7.5e-41 170.6 133 64.7
RcHm_v2.0_Chr6g0301461 Rosa chinensis HOM05D006275 ORTHO05D007839 7.5e-41 170.6 138 66.7
MSTRG.1264 Avicennia marina HOM05D006275 ORTHO05D007839 9.8e-41 170.2 136 64.7
MD08G1027600 Malus domestica HOM05D006275 ORTHO05D007839 9.8e-41 170.2 142 62.0
unitig_46.g17937 Utricularia gibba HOM05D006275 ORTHO05D007839 1.3e-40 169.9 135 65.9
CsaV3_3G045380 Cucumis sativus L. HOM05D006275 ORTHO05D007839 1.7e-40 169.5 136 64.0
Eucgr.F01878 Eucalyptus grandis HOM05D006275 ORTHO05D007839 1.7e-40 169.5 134 64.9
FAN15G2697 Fragaria x ananassa HOM05D006275 ORTHO05D007839 1.7e-40 169.5 136 65.4
ClCG05G018790 Citrullus lanatus HOM05D006275 ORTHO05D007839 2.2e-40 169.1 138 64.5
Potri.002G033300 Populus trichocarpa HOM05D006275 ORTHO05D007839 2.2e-40 169.1 138 63.0
Cpa.g.c33902 Carica papaya HOM05D006275 ORTHO05D007839 2.9e-40 168.7 134 66.4
MELO3C003811.2 Cucumis melo HOM05D006275 ORTHO05D007839 2.9e-40 168.7 136 65.4
AUR62038041 Chenopodium quinoa HOM05D006275 ORTHO05D007839 3.7e-40 168.3 130 63.8
Manes.05G156800 Manihot esculenta HOM05D006275 ORTHO05D007839 3.7e-40 168.3 137 65.0
PGSC0003DMG400003696 Solanum tuberosum HOM05D006275 ORTHO05D007839 3.7e-40 168.3 128 67.2
Ah.05g177020 Amaranthus hybridus HOM05D006275 ORTHO05D007839 4.9e-40 167.9 136 64.7
Haze_22533 Corylus avellana HOM05D006275 ORTHO05D007839 4.9e-40 167.9 97 79.4
FAN27G1059 Fragaria x ananassa HOM05D006275 ORTHO05D007839 6.4e-40 167.5 136 64.7
AUR62014497 Chenopodium quinoa HOM05D006275 ORTHO05D007839 8.3e-40 167.2 133 63.2
Lsat_1_v5_gn_4_117720 Lactuca sativa HOM05D006275 ORTHO05D007839 8.3e-40 167.2 138 61.6
Nitab4.5_0003265g0060 Nicotiana tabacum HOM05D006275 ORTHO05D007839 8.3e-40 167.2 128 65.6
EL10Ac1g00643 Beta vulgaris HOM05D006275 ORTHO05D007839 1.1e-39 166.8 132 62.1
Peaxi162Scf00140g10025 Petunia axillaris HOM05D006275 ORTHO05D007839 1.4e-39 166.4 129 63.6
Phvul.001G012400 Phaseolus vulgaris HOM05D006275 ORTHO05D007839 1.4e-39 166.4 134 64.9
VMungo0647G0412 Vigna mungo HOM05D006275 ORTHO05D007839 1.4e-39 166.4 134 64.2
HanXRQChr16g0501501 Helianthus annuus HOM05D006275 ORTHO05D007839 1.9e-39 166.0 133 61.7
SalBow7G2217 Salvia bowleyana HOM05D006275 ORTHO05D007839 1.9e-39 166.0 132 64.4
Migut.N00484 Erythranthe guttata HOM05D006275 ORTHO05D007839 2.4e-39 165.6 133 61.7
Nitab4.5_0009228g0020 Nicotiana tabacum HOM05D006275 ORTHO05D007839 2.4e-39 165.6 128 64.8
Lalb_Chr22g0354641 Lupinus albus HOM05D006275 ORTHO05D007839 3.2e-39 165.2 136 62.5
Medtr1g022450 Medicago truncatula HOM05D006275 ORTHO05D007839 3.2e-39 165.2 137 61.3
Nn1g04018 Nelumbo nucifera HOM05D006275 ORTHO05D007839 4.1e-39 164.9 138 65.9
DCAR_022467 Daucus carota HOM05D006275 ORTHO05D007839 5.4e-39 164.5 131 63.4
FvH4_2g39490 Fragaria vesca HOM05D006275 ORTHO05D007839 1.2e-38 163.3 141 63.1
Sabra02G0026900 Salix brachista HOM05D006275 ORTHO05D007839 1.2e-38 163.3 97 76.3
arahy.Tifrunner.gnm1.ann1.RSD13X Arachis hypogaea HOM05D006275 ORTHO05D007839 2.1e-38 162.5 133 61.7
arahy.Tifrunner.gnm1.ann1.T5GRUU Arachis hypogaea HOM05D006275 ORTHO05D007839 2.1e-38 162.5 133 61.7
A07p40910 Brassica napus HOM05D006275 ORTHO05D007839 3.5e-38 161.8 144 56.2
BraA07t31631Z Brassica rapa HOM05D006275 ORTHO05D007839 3.5e-38 161.8 144 56.2
CiPaw.07G158800 Carya illinoinensis HOM05D006275 ORTHO05D007839 3.5e-38 161.8 138 62.3
HanXRQChr09g0268981 Helianthus annuus HOM05D006275 ORTHO05D007839 3.5e-38 161.8 138 63.8
SGA_v2.0_scaffold201G41391 Striga asiatica HOM05D006275 ORTHO05D007839 3.5e-38 161.8 132 59.8
Lj5g0023115 Lotus japonicus HOM05D006275 ORTHO05D007839 6.0e-38 161.0 137 59.1
Glyma.14G072400 Glycine max HOM05D006275 ORTHO05D007839 7.8e-38 160.6 136 61.8
ECA232G2653 Erigeron canadensis HOM05D006275 ORTHO05D007839 2.3e-37 159.1 139 61.2
Carub.0002s2219 Capsella rubella HOM05D006275 ORTHO05D007839 3.0e-37 158.7 149 55.7
THA.LOC104811376 Tarenaya hassleriana HOM05D006275 ORTHO05D007839 3.0e-37 158.7 146 59.6
AL2G35280 Arabidopsis lyrata HOM05D006275 ORTHO05D007839 3.9e-37 158.3 146 56.2
BcaC08g47007 Brassica carinata HOM05D006275 ORTHO05D007839 3.9e-37 158.3 148 53.4
PGR031G1371 Punica granatum HOM05D006275 ORTHO05D007839 3.9e-37 158.3 136 61.0
BcaC08g47361 Brassica carinata HOM05D006275 ORTHO05D007839 8.6e-37 157.1 95 72.6
C06p49340 Brassica napus HOM05D006275 ORTHO05D007839 8.6e-37 157.1 95 72.6
BolC6t39969H Brassica oleracea HOM05D006275 ORTHO05D007839 8.6e-37 157.1 95 72.6
arahy.Tifrunner.gnm1.ann1.W9L06J Arachis hypogaea HOM05D006275 ORTHO05D007839 1.1e-36 156.8 131 60.3
arahy.Tifrunner.gnm1.ann1.WR55YC Arachis hypogaea HOM05D006275 ORTHO05D007839 1.1e-36 156.8 131 60.3
BcaC02g12477 Brassica carinata HOM05D006275 ORTHO05D007839 1.1e-36 156.8 95 72.6
A05p02860 Brassica napus HOM05D006275 ORTHO05D007839 1.1e-36 156.8 95 72.6
C04p03490 Brassica napus HOM05D006275 ORTHO05D007839 1.1e-36 156.8 95 72.6
BolC4t21983H Brassica oleracea HOM05D006275 ORTHO05D007839 1.1e-36 156.8 95 72.6
BraA05t19277Z Brassica rapa HOM05D006275 ORTHO05D007839 1.1e-36 156.8 95 72.6
CARHR068700 Cardamine hirsuta HOM05D006275 ORTHO05D007839 1.9e-36 156.0 145 55.9
Ca_18049_v3 Cicer arietinum L. HOM05D006275 ORTHO05D007839 2.5e-36 155.6 138 59.4
Sp5g30490 Schrenkiella parvula HOM05D006275 ORTHO05D007839 2.5e-36 155.6 109 64.2
Glyma.17G252600 Glycine max HOM05D006275 ORTHO05D007839 3.3e-36 155.2 97 74.2
PSO731G0021 Papaver somniferum HOM05D006275 ORTHO05D007839 3.3e-36 155.2 142 57.7
Sopen04g034220 Solanum pennellii HOM05D006275 ORTHO05D007839 3.3e-36 155.2 91 76.9
PSO764G0160 Papaver somniferum HOM05D006275 ORTHO05D007839 4.3e-36 154.8 142 57.0
TPR.G20152 Trifolium pratense HOM05D006275 ORTHO05D007839 4.3e-36 154.8 126 61.1
TWI36G0893 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 4.3e-36 154.8 138 58.7
Actinidia37997 Actinidia chinensis HOM05D006275 ORTHO05D007839 5.6e-36 154.5 132 59.1
Aa31LG4G5560 Aethionema arabicum HOM05D006275 ORTHO05D007839 7.3e-36 154.1 144 53.5
Thhalv10019294m.g Eutrema salsugineum HOM05D006275 ORTHO05D007839 9.5e-36 153.7 148 53.4
Psat6g009240 Pisum sativum HOM05D006275 ORTHO05D007839 2.1e-35 152.5 137 58.4
AT1G75350 Arabidopsis thaliana HOM05D006275 ORTHO05D007839 6.2e-35 151.0 148 55.4
Aqoxy5G01584 Aquilegia oxysepala HOM05D006275 ORTHO05D007839 1.4e-34 149.8 135 57.8
Rhsim07G0241500 Rhododendron simsii HOM05D006275 ORTHO05D007839 5.2e-34 147.9 134 57.5
RhsimUnG0236400 Rhododendron simsii HOM05D006275 ORTHO05D007839 5.2e-34 147.9 134 57.5
HPP92_009679 Vanilla planifolia HOM05D006275 ORTHO05D007839 6.8e-34 147.5 112 58.9
ATR0568G031 Amborella trichopoda HOM05D006275 ORTHO05D007839 8.9e-34 147.1 116 65.5
CDE02G2235 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 9.9e-33 143.7 95 69.5
CDE06G0798 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 9.9e-33 143.7 95 69.5
vmacro04538 Vaccinium macrocarpon HOM05D006275 ORTHO05D007839 9.9e-33 143.7 110 60.9
Pp3c4_22510 Physcomitrium patens HOM05D006275 ORTHO05D007839 1.9e-31 139.4 93 66.7
Pp3c13_7030 Physcomitrium patens HOM05D006275 ORTHO05D007839 6.0e-30 134.4 120 51.7
AagrBONN_evm.TU.Sc2ySwM_368.2624 Anthoceros agrestis HOM05D006275 ORTHO05D007839 1.7e-29 132.9 98 62.2
Pp3c3_430 Physcomitrium patens HOM05D006275 ORTHO05D007839 3.0e-29 132.1 94 66.0
FAN20G1429 Fragaria x ananassa HOM05D006275 ORTHO05D007839 3.9e-29 131.7 110 60.9
Mapoly0051s0056 Marchantia polymorpha HOM05D006275 ORTHO05D007839 5.6e-28 127.9 101 58.4
QL02p009087 Quercus lobata HOM05D006275 ORTHO05D007839 2.8e-27 125.6 76 77.6
Duzib041G0262 Durio zibethinus HOM05D006275 ORTHO05D007839 8.9e-26 120.6 77 75.3
CBR_g52135 Chara braunii HOM05D006275 ORTHO05D007839 2.6e-25 119.0 97 57.7
SEGI_04934 Sequoiadendron giganteum HOM05D006275 ORTHO05D007839 1.9e-23 112.8 95 57.9
SMO117G0016 Selaginella moellendorffii HOM05D006275 ORTHO05D007839 2.4e-23 112.5 95 54.7
Zm00001eb159080 Zea mays HOM05D006275 ORTHO05D007839 1.7e-21 106.3 111 46.8
Os01g0633000 Oryza sativa ssp. japonica HOM05D006275 ORTHO05D007839 2.3e-21 105.9 106 46.2
Cre08.g365400 Chlamydomonas reinhardtii HOM05D006275 ORTHO05D007839 1.1e-18 97.1 99 47.5
MCO12G376 Micromonas commoda HOM05D006275 ORTHO05D007839 2.0e-17 92.8 97 43.3
BcaC09g48250 Brassica carinata HOM05D006275 ORTHO05D007839 4.4e-17 91.7 47 78.7
TWI56G0783 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 7.9e-14 80.9 58 67.2
Gohir.D12G058400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 5.6e-12 74.7 76 55.3
Gorai.010G176600 Gossypium raimondii HOM05D006275 ORTHO05D007839 5.6e-12 74.7 75 56.0
BcaC05g28396 Brassica carinata HOM05D006275 ORTHO05D003437 1.2e-06 57.0 54 53.7
Sabra05G0177600 Salix brachista HOM05D006275 ORTHO05D007839 2.7e-06 55.8 41 58.5


User provided reference genes

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