Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 4.0e-109 398.3 226 100.0
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 5.3e-77 291.6 227 72.7
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.3e-75 287.0 232 73.7
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 2.9e-75 285.8 230 69.6
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.9e-74 283.1 244 70.5
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 5.1e-72 275.0 211 76.3
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 1.5e-71 273.5 227 65.2
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 4.3e-71 271.9 229 64.6
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 7.3e-71 271.2 224 67.0
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 1.6e-70 270.0 228 68.0
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 3.6e-70 268.9 228 65.4
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 6.2e-70 268.1 217 68.2
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 1.1e-69 267.3 228 66.7
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 9.0e-69 264.2 227 75.3
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 2.6e-68 262.7 220 70.9
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 3.4e-68 262.3 222 64.9
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 5.8e-68 261.5 228 64.9
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 7.6e-68 261.2 220 66.8
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 9.9e-68 260.8 224 65.6
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 2.2e-67 259.6 231 62.8
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 2.2e-67 259.6 214 66.4
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 3.8e-67 258.8 218 65.6
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 4.9e-67 258.5 224 64.3
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 8.4e-67 257.7 220 64.5
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 1.1e-66 257.3 206 67.0
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.4e-66 256.9 217 65.9
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 1.9e-66 256.5 218 64.7
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 1.9e-66 256.5 226 63.3
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 1.9e-66 256.5 224 64.7
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 3.2e-66 255.8 228 63.6
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 4.2e-66 255.4 222 63.1
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 5.5e-66 255.0 221 63.8
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 2.7e-65 252.7 227 61.2
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 4.6e-65 251.9 231 61.9
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 6.0e-65 251.5 225 63.6
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 1.0e-64 250.8 220 67.3
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 1.3e-64 250.4 220 61.4
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 2.3e-64 249.6 216 65.3
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 3.9e-64 248.8 198 68.7
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 5.1e-64 248.4 217 64.5
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 6.7e-64 248.1 222 60.8
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 8.7e-64 247.7 206 64.1
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 1.1e-63 247.3 220 65.9
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 1.5e-63 246.9 217 64.1
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.5e-63 246.9 218 62.8
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 1.5e-63 246.9 217 64.1
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 2.5e-63 246.1 219 61.6
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 7.4e-63 244.6 231 61.9
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 9.6e-63 244.2 220 65.5
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 9.6e-63 244.2 216 63.4
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 1.3e-62 243.8 228 61.0
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 1.3e-62 243.8 205 63.4
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 1.3e-62 243.8 218 62.8
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 2.8e-62 242.7 214 62.1
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 3.7e-62 242.3 214 67.3
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 4.8e-62 241.9 222 64.0
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 6.2e-62 241.5 206 65.0
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 1.8e-61 240.0 222 63.1
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 2.4e-61 239.6 226 59.3
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 2.4e-61 239.6 212 63.2
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 3.1e-61 239.2 192 73.4
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 4.0e-61 238.8 223 60.5
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 5.3e-61 238.4 196 68.4
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 1.2e-60 237.3 213 63.4
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 1.2e-60 237.3 228 60.5
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 1.5e-60 236.9 215 62.3
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 4.5e-60 235.3 207 58.5
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 5.8e-60 235.0 216 63.0
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 1.7e-59 233.4 215 60.5
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 2.2e-59 233.0 227 58.1
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 3.8e-59 232.3 218 61.9
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 4.9e-59 231.9 223 59.2
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 4.9e-59 231.9 225 60.0
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 4.9e-59 231.9 209 63.2
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 8.4e-59 231.1 195 65.6
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 1.4e-58 230.3 190 65.3
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 1.9e-58 229.9 142 81.7
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 2.5e-58 229.6 221 59.3
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 2.5e-58 229.6 225 58.2
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 2.5e-58 229.6 224 57.1
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 2.5e-58 229.6 216 56.9
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 2.5e-58 229.6 225 58.2
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 2.5e-58 229.6 220 59.5
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 2.5e-58 229.6 139 84.2
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 3.2e-58 229.2 262 52.7
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 4.2e-58 228.8 224 57.1
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 4.2e-58 228.8 221 58.4
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 5.5e-58 228.4 224 56.2
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 5.5e-58 228.4 223 56.5
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 5.5e-58 228.4 224 56.2
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 7.1e-58 228.0 216 56.5
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 1.2e-57 227.3 206 61.2
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 2.1e-57 226.5 226 58.0
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 2.7e-57 226.1 213 58.2
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 7.9e-57 224.6 224 56.7
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 1.0e-56 224.2 142 83.1
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.0e-56 224.2 142 81.7
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 1.3e-56 223.8 222 57.7
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.3e-56 223.0 141 82.3
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 3.0e-56 222.6 218 59.6
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 3.9e-56 222.2 218 59.6
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 6.7e-56 221.5 194 65.5
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 1.5e-55 220.3 211 57.8
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 1.5e-55 220.3 218 59.2
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 5.7e-55 218.4 137 78.8
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 1.3e-54 217.2 197 62.9
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 1.6e-54 216.9 140 79.3
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 3.7e-54 215.7 195 60.0
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 1.1e-53 214.2 141 79.4
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 1.1e-53 214.2 194 59.8
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 2.4e-53 213.0 139 79.1
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 9.0e-53 211.1 213 57.7
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 2.2e-51 206.5 139 79.1
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 8.4e-51 204.5 211 59.7
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 2.5e-50 203.0 208 55.8
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 1.6e-49 200.3 211 58.3
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 1.6e-49 200.3 218 56.9
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 2.7e-49 199.5 218 56.9
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 1.5e-44 183.7 128 71.1
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 4.5e-44 182.2 222 50.9
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 6.5e-43 178.3 132 68.2
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 2.1e-41 173.3 132 68.2
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 1.0e-40 171.0 131 64.1
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 3.9e-40 169.1 131 67.9
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 2.5e-39 166.4 133 64.7
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 9.7e-39 164.5 133 64.7
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.4e-37 160.6 227 49.3
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 1.4e-37 160.6 129 82.2
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 2.3e-32 143.3 153 54.2
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 2.3e-32 143.3 113 64.6
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 3.7e-30 136.0 155 49.0
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 1.1e-29 134.4 217 45.6
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 3.3e-23 112.8 75 81.3
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 4.1e-21 105.9 62 79.0
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 4.1e-21 105.9 62 79.0
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.6e-20 104.0 70 80.0
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 4.7e-17 92.4 69 71.0
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 4.4e-15 85.9 145 48.3
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 6.1e-09 65.5 45 73.3


User provided reference genes

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