Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.7e-108 396.0 198 100.0
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.8e-89 332.8 198 81.3
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 3.1e-89 332.0 198 82.8
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 3.1e-89 332.0 201 82.6
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 3.1e-89 332.0 198 83.3
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 3.4e-88 328.6 198 83.8
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.4e-88 328.6 198 82.3
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 4.4e-88 328.2 198 82.3
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 5.8e-88 327.8 198 81.8
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 7.6e-88 327.4 200 81.5
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 9.9e-88 327.0 200 81.0
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 9.9e-88 327.0 200 81.0
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.7e-87 326.2 201 79.6
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 2.2e-87 325.9 198 80.8
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 3.8e-87 325.1 200 81.0
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 1.1e-86 323.6 198 82.3
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 1.4e-86 323.2 199 78.9
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.9e-86 322.8 199 80.4
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.9e-86 322.8 201 79.1
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 3.2e-86 322.0 198 81.3
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 4.2e-86 321.6 198 80.8
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 1.2e-85 320.1 198 79.3
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 2.1e-85 319.3 198 79.3
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 2.7e-85 318.9 198 78.8
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 6.0e-85 317.8 203 77.8
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 7.8e-85 317.4 197 78.7
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 1.0e-84 317.0 198 78.3
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.0e-84 317.0 201 80.1
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 1.3e-84 316.6 198 77.8
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.3e-84 316.6 203 78.3
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 5.1e-84 314.7 198 78.3
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 5.1e-84 314.7 198 79.3
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 8.7e-84 313.9 198 78.3
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 1.1e-83 313.5 198 78.3
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 1.9e-83 312.8 198 77.8
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 2.5e-83 312.4 199 77.4
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 2.5e-83 312.4 198 77.8
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 3.3e-83 312.0 198 77.8
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 4.3e-83 311.6 204 75.5
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 5.6e-83 311.2 199 76.9
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 7.3e-83 310.8 199 76.9
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 9.6e-83 310.5 199 79.4
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 1.3e-82 310.1 198 79.3
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 1.6e-82 309.7 198 78.3
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.6e-82 309.7 201 77.6
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 2.1e-82 309.3 198 78.3
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 2.1e-82 309.3 198 77.8
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 3.6e-82 308.5 199 76.4
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 6.2e-82 307.8 198 75.8
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 6.2e-82 307.8 197 76.1
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 6.2e-82 307.8 198 76.3
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 8.1e-82 307.4 198 76.3
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.1e-81 307.0 198 76.8
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.4e-81 306.6 198 76.8
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.4e-81 306.6 200 76.5
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.4e-81 306.6 199 75.9
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 3.1e-81 305.4 198 75.8
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 3.1e-81 305.4 198 77.3
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 3.1e-81 305.4 198 75.8
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 4.0e-81 305.1 198 75.3
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 4.0e-81 305.1 198 74.2
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 4.0e-81 305.1 198 76.8
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 5.3e-81 304.7 198 74.7
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 6.9e-81 304.3 198 76.8
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 6.9e-81 304.3 199 75.9
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 6.9e-81 304.3 198 75.8
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 9.0e-81 303.9 187 81.3
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 1.2e-80 303.5 198 75.3
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.2e-80 303.5 198 75.8
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 1.5e-80 303.1 198 75.3
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.5e-80 303.1 198 75.3
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.0e-80 302.8 199 75.9
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 2.6e-80 302.4 199 74.9
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 2.6e-80 302.4 199 74.9
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 3.4e-80 302.0 198 74.7
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 3.4e-80 302.0 199 75.9
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 3.4e-80 302.0 199 75.9
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 4.4e-80 301.6 200 76.0
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 7.6e-80 300.8 199 74.4
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 7.6e-80 300.8 223 71.7
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 9.9e-80 300.4 201 74.6
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.3e-79 300.1 198 74.2
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 1.7e-79 299.7 198 74.2
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 2.2e-79 299.3 198 73.7
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 2.9e-79 298.9 198 73.7
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 2.9e-79 298.9 198 74.2
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 4.9e-79 298.1 199 74.4
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.9e-79 298.1 198 73.7
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.9e-79 298.1 198 73.7
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 4.9e-79 298.1 196 75.0
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 6.4e-79 297.7 201 74.6
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 6.4e-79 297.7 198 73.7
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 8.4e-79 297.4 201 74.6
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 1.4e-78 296.6 198 75.8
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 1.9e-78 296.2 196 76.0
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 1.9e-78 296.2 198 75.3
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 2.4e-78 295.8 205 72.7
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 3.2e-78 295.4 200 75.0
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 4.2e-78 295.0 198 74.2
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 4.2e-78 295.0 182 80.8
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 5.4e-78 294.7 198 74.2
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.6e-77 293.1 198 72.2
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 2.7e-77 292.4 200 72.0
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 2.7e-77 292.4 199 72.9
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 2.7e-77 292.4 198 72.2
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 3.5e-77 292.0 198 75.8
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 4.6e-77 291.6 200 74.5
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 6.0e-77 291.2 186 76.3
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 7.9e-77 290.8 206 70.9
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.7e-76 289.7 221 66.5
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.3e-76 289.3 210 69.5
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 3.0e-76 288.9 198 72.7
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 3.0e-76 288.9 198 74.2
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.9e-76 288.5 214 68.2
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 1.1e-75 287.0 198 72.7
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 1.5e-75 286.6 198 72.7
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 1.5e-75 286.6 214 69.2
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 2.8e-74 282.3 186 74.7
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 2.8e-74 282.3 196 70.9
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 2.8e-74 282.3 199 72.4
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 3.6e-74 282.0 247 61.5
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 6.2e-74 281.2 179 76.0
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 6.2e-74 281.2 198 71.2
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.8e-73 279.6 200 72.5
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 4.5e-72 275.0 180 76.1
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 4.5e-72 275.0 199 71.4
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 7.6e-72 274.2 201 70.6
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 1.4e-70 270.0 213 68.1
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.0e-68 263.8 179 72.6
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 2.3e-68 262.7 189 72.0
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.5e-67 260.0 198 66.7
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 1.5e-67 260.0 182 73.1
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 1.9e-67 259.6 193 66.8
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.9e-67 259.6 189 66.7
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 3.3e-67 258.8 191 64.9
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 1.6e-66 256.5 219 62.6
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 2.8e-66 255.8 204 67.2
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 2.6e-64 249.2 233 58.4
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 1.4e-62 243.4 182 65.9
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 1.4e-62 243.4 199 62.3
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 3.7e-58 228.8 179 65.9
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 4.8e-58 228.4 198 60.1
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 8.2e-58 227.6 201 60.7
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 4.1e-57 225.3 153 74.5
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 5.9e-48 194.9 120 80.8
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 7.7e-48 194.5 116 81.9
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 1.4e-44 183.7 187 55.6
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 5.3e-41 171.8 103 85.4
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 5.9e-40 168.3 98 86.7
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 2.2e-39 166.4 188 54.3
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 3.2e-38 162.5 145 62.8
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 5.3e-33 145.2 101 68.3
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 2.1e-29 133.3 97 69.1
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.3e-28 129.8 70 91.4
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 6.7e-28 128.3 205 45.4
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 2.6e-27 126.3 80 72.5
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 7.5e-27 124.8 100 68.0
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 2.7e-24 116.3 71 67.6
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 4.2e-22 109.0 195 37.4
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 2.7e-21 106.3 194 36.6
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 4.7e-21 105.5 99 57.6
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 1.2e-19 100.9 198 39.4
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 4.8e-18 95.5 75 64.0
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 2.4e-17 93.2 98 55.1
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 2.0e-16 90.1 57 70.2
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 7.7e-16 88.2 70 58.6
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 3.2e-14 82.8 52 67.3
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.7e-13 79.7 51 76.5
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.6e-13 79.3 53 73.6
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 6.8e-12 75.1 60 63.3
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 7.5e-11 71.6 171 31.6
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 5.0e-07 58.9 72 47.2


User provided reference genes

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