Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.7e-169 598.6 303 100.0
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 5.6e-167 590.9 303 99.3
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 1.3e-136 490.0 268 93.7
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 7.4e-135 484.2 268 91.8
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 2.0e-132 476.1 268 91.0
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.9e-131 472.2 268 91.4
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 6.5e-131 471.1 268 89.6
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 4.2e-130 468.4 268 88.1
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 5.5e-130 468.0 268 88.8
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 9.4e-130 467.2 268 88.1
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 1.6e-129 466.5 268 88.4
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 2.7e-129 465.7 268 87.7
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 3.6e-129 465.3 268 87.7
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 4.6e-129 464.9 268 87.3
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 4.6e-129 464.9 268 88.1
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 6.1e-129 464.5 268 88.1
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 6.1e-129 464.5 268 87.7
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.4e-128 463.4 268 87.3
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 1.8e-128 463.0 268 86.6
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 2.3e-128 462.6 268 87.7
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 2.3e-128 462.6 268 87.7
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.3e-128 462.6 268 87.3
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 3.9e-128 461.8 268 87.3
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 5.1e-128 461.5 268 87.3
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 6.7e-128 461.1 268 87.3
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 1.1e-127 460.3 268 86.9
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 1.1e-127 460.3 268 86.6
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 1.1e-127 460.3 268 87.3
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 1.1e-127 460.3 268 85.8
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 1.5e-127 459.9 268 86.6
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 2.0e-127 459.5 268 85.8
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 2.0e-127 459.5 268 86.9
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 2.6e-127 459.1 268 86.6
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 5.7e-127 458.0 268 86.6
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 5.7e-127 458.0 268 84.3
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 9.7e-127 457.2 268 86.6
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 9.7e-127 457.2 268 86.2
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 9.7e-127 457.2 268 85.8
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 1.7e-126 456.4 268 85.8
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 2.2e-126 456.1 268 86.6
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 2.2e-126 456.1 268 85.1
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 2.2e-126 456.1 273 84.2
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 2.2e-126 456.1 268 87.3
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 2.8e-126 455.7 268 85.8
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 2.8e-126 455.7 268 85.1
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 6.3e-126 454.5 273 83.2
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 6.3e-126 454.5 268 85.4
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 8.2e-126 454.1 268 87.7
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 8.2e-126 454.1 268 85.1
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 8.2e-126 454.1 268 84.7
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 1.1e-125 453.8 268 85.1
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 1.4e-125 453.4 270 85.6
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 1.8e-125 453.0 268 86.2
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 2.4e-125 452.6 268 85.4
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 2.4e-125 452.6 268 84.7
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 3.1e-125 452.2 268 85.4
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 4.1e-125 451.8 268 86.6
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 4.1e-125 451.8 273 83.5
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 9.1e-125 450.7 268 84.0
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 1.5e-124 449.9 268 84.7
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 2.0e-124 449.5 268 84.7
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.0e-124 449.5 268 84.7
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 4.5e-124 448.4 268 83.6
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 7.7e-124 447.6 268 84.3
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 7.7e-124 447.6 273 83.2
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 1.0e-123 447.2 268 85.4
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 1.0e-123 447.2 266 85.3
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 1.3e-123 446.8 268 85.4
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 1.3e-123 446.8 268 83.2
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.9e-123 445.7 268 83.6
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 2.9e-123 445.7 268 83.6
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 3.8e-123 445.3 268 83.6
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 6.5e-123 444.5 268 83.6
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 8.5e-123 444.1 268 85.1
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 4.2e-122 441.8 277 81.9
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.2e-121 440.3 248 90.7
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 2.7e-121 439.1 268 81.7
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 4.7e-121 438.3 285 78.6
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 4.7e-121 438.3 268 83.6
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 7.9e-121 437.6 268 82.8
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 3.9e-120 435.3 268 83.2
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 6.7e-120 434.5 268 82.1
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 8.8e-120 434.1 284 80.3
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.1e-119 433.7 268 81.0
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 4.4e-119 431.8 268 82.5
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 4.4e-119 431.8 268 81.0
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 5.7e-119 431.4 268 81.0
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 9.7e-119 430.6 268 80.6
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 9.7e-119 430.6 268 80.6
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 9.7e-119 430.6 268 80.6
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 9.7e-119 430.6 268 80.6
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 1.3e-118 430.3 248 88.3
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 3.7e-118 428.7 268 80.2
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 3.7e-118 428.7 268 80.2
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 3.7e-118 428.7 268 78.4
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 4.8e-118 428.3 268 82.1
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 6.3e-118 427.9 268 79.9
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 8.2e-118 427.6 268 78.0
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 1.1e-117 427.2 268 80.2
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.1e-117 427.2 268 77.2
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 1.4e-117 426.8 268 78.0
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 1.4e-117 426.8 268 78.4
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 1.8e-117 426.4 268 78.0
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 1.8e-117 426.4 268 78.0
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 3.1e-117 425.6 268 78.0
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 5.3e-117 424.9 268 77.6
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.2e-116 423.7 281 77.6
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 2.6e-116 422.5 269 78.1
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 2.6e-116 422.5 268 79.1
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 2.9e-115 419.1 268 76.5
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 8.5e-115 417.5 268 78.4
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 1.1e-114 417.2 268 78.0
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 1.5e-114 416.8 246 85.4
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 3.0e-112 409.1 303 69.0
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 1.2e-111 407.1 270 76.3
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 1.5e-111 406.8 307 70.4
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 2.2e-110 402.9 238 85.3
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 3.7e-110 402.1 268 76.9
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 4.1e-109 398.7 268 78.0
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 5.9e-108 394.8 266 76.7
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 5.2e-104 381.7 234 79.5
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 1.2e-103 380.6 281 68.7
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 1.0e-99 367.5 268 66.8
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 4.7e-97 358.6 266 65.8
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 3.8e-91 339.0 268 70.9
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.0e-91 338.6 206 84.0
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 5.0e-75 285.4 203 73.4
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 1.6e-73 280.4 268 60.4
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 1.4e-72 277.3 268 59.7
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 3.2e-61 239.6 221 56.6
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 2.2e-54 216.9 142 78.2
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 1.8e-40 170.6 154 63.6
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 6.9e-40 168.7 91 93.4
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 2.1e-33 147.1 159 57.2
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 3.7e-33 146.4 94 75.5
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 5.1e-19 99.4 67 67.2
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 7.7e-15 85.5 327 29.1
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 5.3e-08 62.8 36 83.3
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 9.1e-08 62.0 36 80.6
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 7.7e-07 58.9 36 77.8
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 2.2e-06 57.4 36 75.0
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 2.2e-06 57.4 51 62.7


User provided reference genes

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