Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 5.0e-65 251.1 144 100.0
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 3.6e-55 218.4 158 86.1
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 2.5e-40 169.1 91 89.0
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 4.7e-39 164.9 92 87.0
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 8.1e-39 164.1 92 85.9
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 5.2e-38 161.4 92 83.7
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.5e-37 159.8 92 83.7
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 2.0e-37 159.5 90 84.4
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 2.2e-36 156.0 89 80.9
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 4.9e-36 154.8 86 86.0
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 8.3e-36 154.1 86 87.2
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 8.3e-36 154.1 94 78.7
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 2.4e-35 152.5 94 77.7
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 7.1e-35 151.0 94 74.5
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 7.1e-35 151.0 84 81.0
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 1.2e-34 150.2 82 89.0
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 1.6e-34 149.8 85 82.4
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 1.6e-34 149.8 84 81.0
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 2.7e-34 149.1 86 80.2
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 3.5e-34 148.7 87 80.5
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 3.5e-34 148.7 83 84.3
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 3.5e-34 148.7 84 79.8
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 4.6e-34 148.3 87 80.5
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 4.6e-34 148.3 82 81.7
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 7.8e-34 147.5 86 80.2
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 7.8e-34 147.5 86 80.2
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 7.8e-34 147.5 84 78.6
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 7.8e-34 147.5 84 79.8
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 1.7e-33 146.4 86 77.9
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 3.9e-33 145.2 81 82.7
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 3.9e-33 145.2 86 80.2
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 3.9e-33 145.2 83 84.3
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 3.9e-33 145.2 94 72.3
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 6.6e-33 144.4 81 81.5
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 6.6e-33 144.4 83 84.3
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 1.1e-32 143.7 81 84.0
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 1.1e-32 143.7 81 84.0
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 1.5e-32 143.3 82 82.9
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.9e-32 142.9 80 81.2
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 1.9e-32 142.9 85 80.0
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 1.9e-32 142.9 82 79.3
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 2.5e-32 142.5 87 78.2
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 4.3e-32 141.7 82 81.7
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 4.3e-32 141.7 82 82.9
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 5.6e-32 141.4 82 80.5
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 5.6e-32 141.4 83 79.5
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 7.3e-32 141.0 80 82.5
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 7.3e-32 141.0 82 80.5
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.2e-31 140.2 81 81.5
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 1.2e-31 140.2 81 80.2
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 1.6e-31 139.8 80 78.8
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 2.1e-31 139.4 80 82.5
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 2.1e-31 139.4 75 82.7
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 2.1e-31 139.4 83 79.5
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 2.1e-31 139.4 82 80.5
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 2.8e-31 139.0 81 80.2
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 2.8e-31 139.0 80 81.2
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 2.8e-31 139.0 81 75.3
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 3.6e-31 138.7 87 78.2
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 4.7e-31 138.3 81 74.1
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 4.7e-31 138.3 95 67.4
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 4.7e-31 138.3 80 81.2
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 4.7e-31 138.3 86 74.4
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 4.7e-31 138.3 87 78.2
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 6.2e-31 137.9 90 70.0
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 6.2e-31 137.9 85 78.8
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 6.2e-31 137.9 82 80.5
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 8.1e-31 137.5 86 76.7
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 1.1e-30 137.1 80 81.2
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 1.4e-30 136.7 108 62.0
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 1.8e-30 136.3 83 79.5
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 1.8e-30 136.3 83 75.9
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 2.4e-30 136.0 83 75.9
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 5.2e-30 134.8 82 75.6
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 6.8e-30 134.4 81 72.8
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 8.9e-30 134.0 85 70.6
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 8.9e-30 134.0 86 72.1
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 1.2e-29 133.7 78 75.6
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 1.2e-29 133.7 86 74.4
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 1.2e-29 133.7 74 83.8
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 1.2e-29 133.7 88 71.6
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 1.5e-29 133.3 77 80.5
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 1.5e-29 133.3 86 70.9
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 1.5e-29 133.3 84 71.4
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 2.0e-29 132.9 86 68.6
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 2.0e-29 132.9 82 72.0
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 2.6e-29 132.5 77 79.2
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.6e-29 132.5 81 75.3
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 2.6e-29 132.5 83 74.7
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 3.4e-29 132.1 74 81.1
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 4.4e-29 131.7 78 74.4
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 4.4e-29 131.7 80 76.2
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 5.8e-29 131.3 81 75.3
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 7.6e-29 131.0 83 71.1
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 9.9e-29 130.6 80 73.8
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 2.2e-28 129.4 78 71.8
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 1.4e-27 126.7 86 68.6
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 3.2e-27 125.6 84 69.0
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 3.2e-27 125.6 86 67.4
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 4.1e-27 125.2 78 69.2
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 4.1e-27 125.2 78 70.5
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 4.1e-27 125.2 78 69.2
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 4.1e-27 125.2 78 69.2
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 4.1e-27 125.2 78 69.2
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 9.2e-27 124.0 82 69.5
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.6e-26 123.2 82 72.0
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.6e-26 123.2 82 72.0
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 2.1e-26 122.9 74 73.0
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 2.7e-26 122.5 84 67.9
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 6.0e-26 121.3 77 70.1
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 7.8e-26 120.9 80 72.5
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 7.8e-26 120.9 79 73.4
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 2.3e-25 119.4 85 61.2
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 8.7e-25 117.5 78 67.9
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 4.7e-23 111.7 82 67.1
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 2.4e-22 109.4 73 69.9
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 4.0e-22 108.6 85 62.4
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 4.0e-22 108.6 62 82.3
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 5.8e-21 104.8 62 80.6
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 8.4e-20 100.9 83 59.0
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 1.6e-18 96.7 78 59.0
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 2.1e-18 96.3 59 78.0
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 6.0e-18 94.7 56 75.0
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 1.1e-16 90.5 59 71.2
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 1.5e-16 90.1 99 53.5
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.5e-16 89.4 62 62.9
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 2.8e-15 85.9 55 67.3
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 2.8e-15 85.9 55 67.3
TAR633G1766 Trochodendron aralioides HOM05D005516 ORTHO05D006713 8.1e-15 84.3 45 86.7
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.8e-14 83.2 59 62.7
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.8e-14 83.2 59 62.7
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 4.2e-11 72.0 47 68.1
Nn6g32378 Nelumbo nucifera HOM05D005516 ORTHO05D006713 5.1e-09 65.1 49 61.2
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 1.5e-08 63.5 51 58.8
BolC2t06845H Brassica oleracea HOM05D005516 ORTHO05D006713 9.0e-06 54.3 33 75.8


User provided reference genes

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