Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039225 Camellia sinensis var. sinensis HOM05D002740 ORTHO05D003126 3.2e-37 157.9 80 100.0
vmacro19980 Vaccinium macrocarpon HOM05D002740 ORTHO05D003126 5.7e-10 67.4 39 84.6
Actinidia06833 Actinidia chinensis HOM05D002740 ORTHO05D003126 4.8e-09 64.3 36 88.9
Hma1.2p1_0130F.1_g060480 Hydrangea macrophylla HOM05D002740 ORTHO05D003126 3.1e-08 61.6 36 83.3
Dinv07505 Davidia involucrata HOM05D002740 ORTHO05D003126 7.0e-08 60.5 36 83.3
COL.COLO4_15534 Corchorus olitorius HOM05D002740 ORTHO05D003126 9.1e-08 60.1 36 80.6
GSVIVG01001480001 Vitis vinifera HOM05D002740 ORTHO05D003126 1.6e-07 59.3 36 83.3
MSTRG.8171 Avicennia marina HOM05D002740 ORTHO05D003126 2.0e-07 58.9 36 80.6
Ciclev10030905m.g Citrus clementina HOM05D002740 ORTHO05D003126 2.0e-07 58.9 36 80.6
QL03p029148 Quercus lobata HOM05D002740 ORTHO05D003126 2.0e-07 58.9 36 80.6
SGA_v2.0_scaffold62G21468 Striga asiatica HOM05D002740 ORTHO05D003126 2.0e-07 58.9 36 80.6
Oeu010185.1 Olea europaea HOM05D002740 ORTHO05D003126 2.7e-07 58.5 36 77.8
Thecc.05G266800 Theobroma cacao HOM05D002740 ORTHO05D003126 2.7e-07 58.5 36 77.8
DCAR_005516 Daucus carota HOM05D002740 ORTHO05D003126 3.5e-07 58.2 36 80.6
Gohir.D11G254700 Gossypium hirsutum HOM05D002740 ORTHO05D003126 3.5e-07 58.2 38 71.1
Gorai.007G273300 Gossypium raimondii HOM05D002740 ORTHO05D003126 3.5e-07 58.2 38 71.1
Lj8A197T37 Lonicera japonica HOM05D002740 ORTHO05D003126 3.5e-07 58.2 39 71.8
MD12G1250300 Malus domestica HOM05D002740 ORTHO05D003126 3.5e-07 58.2 36 75.0
CARHR217090 Cardamine hirsuta HOM05D002740 ORTHO05D003126 4.5e-07 57.8 38 73.7
PGR004G1282 Punica granatum HOM05D002740 ORTHO05D003126 4.5e-07 57.8 39 74.4
TWI60G0984 Tripterygium wilfordii HOM05D002740 ORTHO05D003126 4.5e-07 57.8 38 71.1
Atru.chr2.1110 Acer truncatum HOM05D002740 ORTHO05D003126 5.9e-07 57.4 36 77.8
Haze_04394 Corylus avellana HOM05D002740 ORTHO05D003126 5.9e-07 57.4 36 80.6
Duzib128G1958 Durio zibethinus HOM05D002740 ORTHO05D003126 5.9e-07 57.4 35 80.0
Duzib177G0935 Durio zibethinus HOM05D002740 ORTHO05D003126 5.9e-07 57.4 36 75.0
FAN09G1477 Fragaria x ananassa HOM05D002740 ORTHO05D003126 5.9e-07 57.4 38 73.7
MD04G1232700 Malus domestica HOM05D002740 ORTHO05D003126 5.9e-07 57.4 38 71.1
Sc09g0001850 Simmondsia chinensis HOM05D002740 ORTHO05D003126 5.9e-07 57.4 36 75.0
arahy.Tifrunner.gnm1.ann1.33UQPP Arachis hypogaea HOM05D002740 ORTHO05D003126 7.7e-07 57.0 36 77.8
Carub.0007s3054 Capsella rubella HOM05D002740 ORTHO05D003126 7.7e-07 57.0 38 73.7
Manes.08G140900 Manihot esculenta HOM05D002740 ORTHO05D003126 1.0e-06 56.6 38 71.1
Manes.08G141500 Manihot esculenta HOM05D002740 ORTHO05D003126 1.0e-06 56.6 38 68.4
Potri.019G022700 Populus trichocarpa HOM05D002740 ORTHO05D003126 1.0e-06 56.6 38 71.1
SGA_v2.0_scaffold329G48830 Striga asiatica HOM05D002740 ORTHO05D003126 1.0e-06 56.6 36 77.8
FvH4_6g01520 Fragaria vesca HOM05D002740 ORTHO05D003126 1.3e-06 56.2 38 71.1
FAN05G0538 Fragaria x ananassa HOM05D002740 ORTHO05D003126 1.3e-06 56.2 38 71.1
FAN05G2066 Fragaria x ananassa HOM05D002740 ORTHO05D003126 1.3e-06 56.2 38 71.1
FAN14G2846 Fragaria x ananassa HOM05D002740 ORTHO05D003126 1.3e-06 56.2 38 71.1
TWI32G1314 Tripterygium wilfordii HOM05D002740 ORTHO05D003126 1.3e-06 56.2 38 68.4
AT5G32470 Arabidopsis thaliana HOM05D002740 ORTHO05D003126 1.7e-06 55.8 38 71.1
BcaB04g18093 Brassica carinata HOM05D002740 ORTHO05D003126 1.7e-06 55.8 38 71.1
A08p10090 Brassica napus HOM05D002740 ORTHO05D003126 1.7e-06 55.8 38 71.1
BraA08t33006Z Brassica rapa HOM05D002740 ORTHO05D003126 1.7e-06 55.8 38 71.1
CiPaw.07G070800 Carya illinoinensis HOM05D002740 ORTHO05D003126 1.7e-06 55.8 36 77.8
FAN14G4679 Fragaria x ananassa HOM05D002740 ORTHO05D003126 1.7e-06 55.8 36 75.0
RcHm_v2.0_Chr3g0449211 Rosa chinensis HOM05D002740 ORTHO05D003126 1.7e-06 55.8 38 71.1
THA.LOC104823789 Tarenaya hassleriana HOM05D002740 ORTHO05D003126 1.7e-06 55.8 36 75.0
arahy.Tifrunner.gnm1.ann1.JB472D Arachis hypogaea HOM05D002740 ORTHO05D003126 2.2e-06 55.5 36 75.0
CANSAT54G3003 Cannabis sativa HOM05D002740 ORTHO05D003126 2.2e-06 55.5 38 68.4
SHI23920 Sapria himalayana HOM05D002740 ORTHO05D003126 2.2e-06 55.5 43 62.8
AL7G43640 Arabidopsis lyrata HOM05D002740 ORTHO05D003126 2.9e-06 55.1 38 71.1
Gohir.A11G244600 Gossypium hirsutum HOM05D002740 ORTHO05D003126 2.9e-06 55.1 38 68.4
Lsat_1_v5_gn_8_2520 Lactuca sativa HOM05D002740 ORTHO05D003126 2.9e-06 55.1 36 75.0
TAR365G0402 Trochodendron aralioides HOM05D002740 ORTHO05D003126 2.9e-06 55.1 38 65.8
TAR365G1151 Trochodendron aralioides HOM05D002740 ORTHO05D003126 2.9e-06 55.1 38 65.8
Cc09_g02980 Coffea canephora HOM05D002740 ORTHO05D003126 3.8e-06 54.7 36 69.4
Migut.F02056 Erythranthe guttata HOM05D002740 ORTHO05D003126 3.8e-06 54.7 35 74.3
VMungo0720G1032 Vigna mungo HOM05D002740 ORTHO05D003126 3.8e-06 54.7 36 77.8
Ah.02g118370 Amaranthus hybridus HOM05D002740 ORTHO05D003126 5.0e-06 54.3 36 72.2
Glyma.20G226700 Glycine max HOM05D002740 ORTHO05D003126 5.0e-06 54.3 36 75.0
Gohir.D08G234800 Gossypium hirsutum HOM05D002740 ORTHO05D003126 5.0e-06 54.3 36 72.2
Gorai.004G249600 Gossypium raimondii HOM05D002740 ORTHO05D003126 5.0e-06 54.3 36 72.2
Lj2A46T69 Lonicera japonica HOM05D002740 ORTHO05D003126 5.0e-06 54.3 36 72.2
Nn1g02994 Nelumbo nucifera HOM05D002740 ORTHO05D003126 5.0e-06 54.3 36 72.2
Sp7g07700 Schrenkiella parvula HOM05D002740 ORTHO05D003126 5.0e-06 54.3 38 68.4
BcaC07g37707 Brassica carinata HOM05D002740 ORTHO05D003126 6.5e-06 53.9 38 68.4
BolC8t48073H Brassica oleracea HOM05D002740 ORTHO05D003126 6.5e-06 53.9 38 68.4
ECA238G0995 Erigeron canadensis HOM05D002740 ORTHO05D003126 6.5e-06 53.9 36 72.2
Thhalv10002337m.g Eutrema salsugineum HOM05D002740 ORTHO05D003126 6.5e-06 53.9 38 71.1
Hund07176 Selenicereus undatus HOM05D002740 ORTHO05D003126 6.5e-06 53.9 36 66.7
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 6.5e-06 53.9 38 68.4
CSS0008679 Camellia sinensis var. sinensis HOM05D002740 ORTHO05D003126 8.5e-06 53.5 36 75.0
CDE08G1574 Ceratophyllum demersum HOM05D002740 ORTHO05D003126 8.5e-06 53.5 36 72.2
Lalb_Chr02g0148991 Lupinus albus HOM05D002740 ORTHO05D003126 8.5e-06 53.5 36 72.2


User provided reference genes

Program Settings