Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039205 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 6.4e-37 156.8 72 100.0
CSS0011636 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 8.1e-32 139.8 72 87.5
CSS0044790 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 8.1e-32 139.8 72 87.5
CSS0013431 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.4e-28 129.0 72 87.5
CSS0001609 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.3e-18 95.1 57 82.5
CSS0014298 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.3e-18 95.1 57 82.5
CSS0022214 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.3e-18 95.1 57 82.5
CSS0031875 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.3e-18 95.1 57 82.5
Duzib106G0520 Durio zibethinus HOM05D003558 ORTHO05D004392 6.7e-18 93.6 57 77.2
CSS0024989 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.5e-17 92.4 48 89.6
Nn2g12717 Nelumbo nucifera HOM05D003558 ORTHO05D004392 2.5e-17 91.7 48 89.6
Dinv37501 Davidia involucrata HOM05D003558 ORTHO05D004392 3.3e-17 91.3 48 87.5
Lj3g0002122 Lotus japonicus HOM05D003558 ORTHO05D004392 3.3e-17 91.3 57 78.9
Manes.01G045195 Manihot esculenta HOM05D003558 ORTHO05D004392 3.3e-17 91.3 48 89.6
Dinv38812 Davidia involucrata HOM05D003558 ORTHO05D004392 4.3e-17 90.9 48 87.5
Thhalv10023640m.g Eutrema salsugineum HOM05D003558 ORTHO05D004392 4.3e-17 90.9 57 73.7
ECA246G0145 Erigeron canadensis HOM05D003558 ORTHO05D004392 5.7e-17 90.5 48 85.4
Lsat_1_v5_gn_3_12881 Lactuca sativa HOM05D003558 ORTHO05D004392 5.7e-17 90.5 48 85.4
Lj8A204G66 Lonicera japonica HOM05D003558 ORTHO05D004392 5.7e-17 90.5 48 89.6
Potri.003G142700 Populus trichocarpa HOM05D003558 ORTHO05D004392 7.4e-17 90.1 48 87.5
Sabra03G0103300 Salix brachista HOM05D003558 ORTHO05D004392 7.4e-17 90.1 48 87.5
vmacro21480 Vaccinium macrocarpon HOM05D003558 ORTHO05D004392 7.4e-17 90.1 48 85.4
BcaB07g31471 Brassica carinata HOM05D003558 ORTHO05D004392 9.7e-17 89.7 48 83.3
BcaB07g31496 Brassica carinata HOM05D003558 ORTHO05D004392 9.7e-17 89.7 48 83.3
BcaC04g22576 Brassica carinata HOM05D003558 ORTHO05D004392 9.7e-17 89.7 48 83.3
BcaC04g22613 Brassica carinata HOM05D003558 ORTHO05D004392 9.7e-17 89.7 48 83.3
A09p14400 Brassica napus HOM05D003558 ORTHO05D004392 9.7e-17 89.7 48 83.3
A09p14640 Brassica napus HOM05D003558 ORTHO05D004392 9.7e-17 89.7 48 83.3
C09p17320 Brassica napus HOM05D003558 ORTHO05D004392 9.7e-17 89.7 48 83.3
C09p17720 Brassica napus HOM05D003558 ORTHO05D004392 9.7e-17 89.7 48 83.3
BolC9t54634H Brassica oleracea HOM05D003558 ORTHO05D004392 9.7e-17 89.7 48 83.3
BolC9t54666H Brassica oleracea HOM05D003558 ORTHO05D004392 9.7e-17 89.7 48 83.3
BraA09t37087Z Brassica rapa HOM05D003558 ORTHO05D004392 9.7e-17 89.7 48 83.3
BraA09t37110Z Brassica rapa HOM05D003558 ORTHO05D004392 9.7e-17 89.7 48 83.3
Carub.0002s0023 Capsella rubella HOM05D003558 ORTHO05D004392 9.7e-17 89.7 48 83.3
Sp2g00230 Schrenkiella parvula HOM05D003558 ORTHO05D004392 9.7e-17 89.7 48 83.3
MSTRG.1797 Avicennia marina HOM05D003558 ORTHO05D004392 1.3e-16 89.4 48 85.4
Cpa.g.sc79.5 Carica papaya HOM05D003558 ORTHO05D004392 1.3e-16 89.4 48 83.3
Manes.02G006900 Manihot esculenta HOM05D003558 ORTHO05D004392 1.3e-16 89.4 48 87.5
Thecc.05G207600 Theobroma cacao HOM05D003558 ORTHO05D004392 1.3e-16 89.4 48 85.4
CANSAT21G2039 Cannabis sativa HOM05D003558 ORTHO05D004392 1.6e-16 89.0 48 85.4
Glyma.05G127300 Glycine max HOM05D003558 ORTHO05D004392 1.6e-16 89.0 48 87.5
Lj4g0003124 Lotus japonicus HOM05D003558 ORTHO05D004392 1.6e-16 89.0 48 87.5
Psat6g019440 Pisum sativum HOM05D003558 ORTHO05D004392 1.6e-16 89.0 48 87.5
Zm00001eb121180 Zea mays HOM05D003558 ORTHO05D004392 1.6e-16 89.0 57 77.2
Lalb_Chr12g0208821 Lupinus albus HOM05D003558 ORTHO05D004392 2.2e-16 88.6 48 85.4
Nn1g00283 Nelumbo nucifera HOM05D003558 ORTHO05D004392 2.2e-16 88.6 48 85.4
AL2G10280 Arabidopsis lyrata HOM05D003558 ORTHO05D004392 2.8e-16 88.2 48 81.2
AT1G64520 Arabidopsis thaliana HOM05D003558 ORTHO05D004392 2.8e-16 88.2 47 85.1
DCAR_026273 Daucus carota HOM05D003558 ORTHO05D004392 2.8e-16 88.2 48 87.5
PGR042G0055 Punica granatum HOM05D003558 ORTHO05D004392 2.8e-16 88.2 48 87.5
THA.LOC104809321 Tarenaya hassleriana HOM05D003558 ORTHO05D004392 2.8e-16 88.2 48 83.3
TAR374G0657 Trochodendron aralioides HOM05D003558 ORTHO05D004392 2.8e-16 88.2 48 85.4
TAR375G0349 Trochodendron aralioides HOM05D003558 ORTHO05D004392 2.8e-16 88.2 48 85.4
VMungo0251G1601 Vigna mungo HOM05D003558 ORTHO05D004392 2.8e-16 88.2 48 87.5
GSVIVG01019594001 Vitis vinifera HOM05D003558 ORTHO05D004392 2.8e-16 88.2 48 85.4
CARHR046430 Cardamine hirsuta HOM05D003558 ORTHO05D004392 3.7e-16 87.8 48 81.2
Ciclev10021697m.g Citrus clementina HOM05D003558 ORTHO05D004392 3.7e-16 87.8 48 83.3
Cc08_g16370 Coffea canephora HOM05D003558 ORTHO05D004392 3.7e-16 87.8 48 83.3
Duzib177G1044 Durio zibethinus HOM05D003558 ORTHO05D004392 3.7e-16 87.8 48 85.4
Hma1.2p1_0440F.1_g153570 Hydrangea macrophylla HOM05D003558 ORTHO05D004392 3.7e-16 87.8 47 87.2
Psat0s889g0080 Pisum sativum HOM05D003558 ORTHO05D004392 3.7e-16 87.8 48 85.4
Psat7g261400 Pisum sativum HOM05D003558 ORTHO05D004392 3.7e-16 87.8 48 85.4
THA.LOC104817564 Tarenaya hassleriana HOM05D003558 ORTHO05D004392 3.7e-16 87.8 48 83.3
TWI60G0493 Tripterygium wilfordii HOM05D003558 ORTHO05D004392 3.7e-16 87.8 48 85.4
Atru.chr9.1940 Acer truncatum HOM05D003558 ORTHO05D004392 4.8e-16 87.4 48 83.3
AL7G47120 Arabidopsis lyrata HOM05D003558 ORTHO05D004392 4.8e-16 87.4 48 81.2
MSTRG.13893 Avicennia marina HOM05D003558 ORTHO05D004392 4.8e-16 87.4 59 67.8
Medtr1g016750 Medicago truncatula HOM05D003558 ORTHO05D004392 4.8e-16 87.4 48 85.4
Oeu041397.1 Olea europaea HOM05D003558 ORTHO05D004392 4.8e-16 87.4 48 83.3
Oeu055020.1 Olea europaea HOM05D003558 ORTHO05D004392 4.8e-16 87.4 48 83.3
COL.COLO4_08911 Corchorus olitorius HOM05D003558 ORTHO05D004392 6.3e-16 87.0 47 87.2
COL.COLO4_23475 Corchorus olitorius HOM05D003558 ORTHO05D004392 6.3e-16 87.0 47 87.2
COL.COLO4_35445 Corchorus olitorius HOM05D003558 ORTHO05D004392 6.3e-16 87.0 47 87.2
Nitab4.5_0000357g0410 Nicotiana tabacum HOM05D003558 ORTHO05D004392 6.3e-16 87.0 48 83.3
SGA_v2.0_scaffold111G31394 Striga asiatica HOM05D003558 ORTHO05D004392 6.3e-16 87.0 48 83.3
Aa31LG2G1510 Aethionema arabicum HOM05D003558 ORTHO05D004392 8.2e-16 86.7 48 81.2
ClCG07G011380 Citrullus lanatus HOM05D003558 ORTHO05D004392 8.2e-16 86.7 48 85.4
MELO3C016262.2 Cucumis melo HOM05D003558 ORTHO05D004392 8.2e-16 86.7 48 85.4
HanXRQChr15g0472881 Helianthus annuus HOM05D003558 ORTHO05D004392 8.2e-16 86.7 48 79.2
Phvul.002G197600 Phaseolus vulgaris HOM05D003558 ORTHO05D004392 8.2e-16 86.7 48 85.4
ATR0602G090 Amborella trichopoda HOM05D003558 ORTHO05D004392 1.1e-15 86.3 48 83.3
Glyma.08G082000 Glycine max HOM05D003558 ORTHO05D004392 1.1e-15 86.3 48 85.4
Lalb_Chr07g0188951 Lupinus albus HOM05D003558 ORTHO05D004392 1.1e-15 86.3 48 85.4
SalBow8G5190 Salvia bowleyana HOM05D003558 ORTHO05D004392 1.1e-15 86.3 48 83.3
Sp7g00080 Schrenkiella parvula HOM05D003558 ORTHO05D004392 1.1e-15 86.3 48 79.2
Gohir.1Z049372 Gossypium hirsutum HOM05D003558 ORTHO05D004392 1.4e-15 85.9 48 81.2
Gohir.A08G223500 Gossypium hirsutum HOM05D003558 ORTHO05D004392 1.4e-15 85.9 48 81.2
Gorai.004G260100 Gossypium raimondii HOM05D003558 ORTHO05D004392 1.4e-15 85.9 48 81.2
TAR425G0004 Trochodendron aralioides HOM05D003558 ORTHO05D004392 1.4e-15 85.9 48 81.2
Aqoxy2G02732 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 1.8e-15 85.5 48 83.3
arahy.Tifrunner.gnm1.ann1.HE7D3F Arachis hypogaea HOM05D003558 ORTHO05D004392 1.8e-15 85.5 48 83.3
arahy.Tifrunner.gnm1.ann1.R1RJVJ Arachis hypogaea HOM05D003558 ORTHO05D004392 1.8e-15 85.5 48 83.3
CSS0029098 Camellia sinensis var. sinensis HOM05D027468 ORTHO05D113448 1.8e-15 85.5 35 97.1
CAN.G567.30 Capsicum annuum HOM05D003558 ORTHO05D004392 1.8e-15 85.5 48 81.2
Duzib128G1157 Durio zibethinus HOM05D003558 ORTHO05D004392 1.8e-15 85.5 48 83.3
FvH4_5g11650 Fragaria vesca HOM05D003558 ORTHO05D004392 1.8e-15 85.5 48 81.2
FAN04G1402 Fragaria x ananassa HOM05D003558 ORTHO05D004392 1.8e-15 85.5 48 81.2
FAN08G1805 Fragaria x ananassa HOM05D003558 ORTHO05D004392 1.8e-15 85.5 48 81.2
FAN13G2808 Fragaria x ananassa HOM05D003558 ORTHO05D004392 1.8e-15 85.5 48 81.2
FAN18G4304 Fragaria x ananassa HOM05D003558 ORTHO05D004392 1.8e-15 85.5 48 81.2
RcHm_v2.0_Chr7g0186141 Rosa chinensis HOM05D003558 ORTHO05D004392 1.8e-15 85.5 48 81.2
Sed0010282 Sechium edule HOM05D003558 ORTHO05D004392 1.8e-15 85.5 48 83.3
Sed0022053 Sechium edule HOM05D003558 ORTHO05D004392 1.8e-15 85.5 48 83.3
Actinidia22742 Actinidia chinensis HOM05D003558 ORTHO05D004392 2.4e-15 85.1 46 82.6
Solyc08g082700.3 Solanum lycopersicum HOM05D003558 ORTHO05D004392 2.4e-15 85.1 48 79.2
Sopen08g030930 Solanum pennellii HOM05D003558 ORTHO05D004392 2.4e-15 85.1 48 79.2
TPR.G13178 Trifolium pratense HOM05D003558 ORTHO05D004392 2.4e-15 85.1 48 83.3
Hund11374 Selenicereus undatus HOM05D003558 ORTHO05D004392 3.1e-15 84.7 48 79.2
Sc01g0010420 Simmondsia chinensis HOM05D003558 ORTHO05D004392 3.1e-15 84.7 48 83.3
TWI81G0268 Tripterygium wilfordii HOM05D003558 ORTHO05D004392 3.1e-15 84.7 48 81.2
HPP92_006339 Vanilla planifolia HOM05D003558 ORTHO05D004392 3.1e-15 84.7 48 81.2
HPP92_027865 Vanilla planifolia HOM05D003558 ORTHO05D004392 3.1e-15 84.7 48 81.2
Migut.A00609 Erythranthe guttata HOM05D003558 ORTHO05D004392 4.1e-15 84.3 48 79.2
MD06G1111600 Malus domestica HOM05D003558 ORTHO05D004392 4.1e-15 84.3 48 81.2
MD14G1132800 Malus domestica HOM05D003558 ORTHO05D004392 4.1e-15 84.3 48 81.2
Nitab4.5_0002367g0050 Nicotiana tabacum HOM05D003558 ORTHO05D004392 4.1e-15 84.3 48 77.1
Nitab4.5_0002793g0010 Nicotiana tabacum HOM05D003558 ORTHO05D004392 4.1e-15 84.3 48 77.1
Nitab4.5_0003266g0030 Nicotiana tabacum HOM05D003558 ORTHO05D004392 4.1e-15 84.3 45 84.4
Oeu009980.1 Olea europaea HOM05D003558 ORTHO05D004392 4.1e-15 84.3 47 83.0
QL02p029625 Quercus lobata HOM05D003558 ORTHO05D004392 4.1e-15 84.3 47 83.0
Aqoxy2G02711 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 5.3e-15 84.0 48 81.2
CiPaw.11G117400 Carya illinoinensis HOM05D003558 ORTHO05D004392 5.3e-15 84.0 48 81.2
CsaV3_4G006830 Cucumis sativus L. HOM05D003558 ORTHO05D004392 5.3e-15 84.0 48 81.2
Zm00001eb413880 Zea mays HOM05D003558 ORTHO05D004392 5.3e-15 84.0 57 73.7
FAN18G4084 Fragaria x ananassa HOM05D003558 ORTHO05D004392 6.9e-15 83.6 46 80.4
PGSC0003DMG400012259 Solanum tuberosum HOM05D003558 ORTHO05D004392 6.9e-15 83.6 47 80.9
CiPaw.12G080800 Carya illinoinensis HOM05D003558 ORTHO05D004392 9.0e-15 83.2 47 83.0
Prupe.5G124300 Prunus persica HOM05D003558 ORTHO05D004392 9.0e-15 83.2 48 79.2
AUR62007010 Chenopodium quinoa HOM05D003558 ORTHO05D004392 1.2e-14 82.8 48 81.2
Eucgr.E00889 Eucalyptus grandis HOM05D003558 ORTHO05D004392 1.2e-14 82.8 48 83.3
Os07g0435100 Oryza sativa ssp. japonica HOM05D003558 ORTHO05D004392 1.2e-14 82.8 55 70.9
Ah.12g052830 Amaranthus hybridus HOM05D003558 ORTHO05D004392 1.5e-14 82.4 48 79.2
AUR62019874 Chenopodium quinoa HOM05D003558 ORTHO05D004392 1.5e-14 82.4 48 81.2
Peaxi162Scf00074g00546 Petunia axillaris HOM05D003558 ORTHO05D004392 1.5e-14 82.4 47 78.7
AT5G42040 Arabidopsis thaliana HOM05D003558 ORTHO05D004392 2.0e-14 82.0 48 72.9
HanXRQChr14g0460421 Helianthus annuus HOM05D003558 ORTHO05D004392 2.6e-14 81.6 58 70.7
SEGI_23551 Sequoiadendron giganteum HOM05D003558 ORTHO05D004392 2.6e-14 81.6 48 79.2
PSO017G6909 Papaver somniferum HOM05D003558 ORTHO05D004392 3.4e-14 81.3 48 77.1
QL05p030756 Quercus lobata HOM05D003558 ORTHO05D004392 4.5e-14 80.9 47 80.9
PSO170G3792 Papaver somniferum HOM05D003558 ORTHO05D004392 5.9e-14 80.5 48 77.1
Eucgr.E00943 Eucalyptus grandis HOM05D003558 ORTHO05D004392 1.0e-13 79.7 47 80.9
Sabra01G0064500 Salix brachista HOM05D003558 ORTHO05D004392 1.0e-13 79.7 45 82.2
Potri.001G088200 Populus trichocarpa HOM05D003558 ORTHO05D004392 1.3e-13 79.3 46 82.6
EL10Ac5g12950 Beta vulgaris HOM05D003558 ORTHO05D004392 1.7e-13 79.0 48 75.0
CSS0022413 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 5.0e-13 77.4 38 92.1
Eucgr.E00976 Eucalyptus grandis HOM05D003558 ORTHO05D045319 8.5e-13 76.6 55 67.3
Pp3c14_17630 Physcomitrium patens HOM05D003558 ORTHO05D004392 1.1e-12 76.3 49 73.5
Glyma.03G059800 Glycine max HOM05D000140 ORTHO05D004392 1.4e-12 75.9 40 85.0
Eucgr.E00716 Eucalyptus grandis HOM05D003558 ORTHO05D045319 4.2e-12 74.3 54 64.8
Mapoly0071s0017 Marchantia polymorpha HOM05D003558 ORTHO05D004392 4.2e-12 74.3 48 70.8
AagrBONN_evm.TU.Sc2ySwM_228.783 Anthoceros agrestis HOM05D003558 ORTHO05D004392 7.2e-12 73.6 48 70.8
Pp3c17_21360 Physcomitrium patens HOM05D003558 ORTHO05D004392 7.2e-12 73.6 49 69.4
CSS0013121 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 9.4e-12 73.2 48 72.9
SMO196G0279 Selaginella moellendorffii HOM05D003558 ORTHO05D004392 2.7e-11 71.6 48 68.8
Eucgr.E00934 Eucalyptus grandis HOM05D003558 ORTHO05D004392 3.6e-11 71.2 42 76.2
CSS0017714 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.3e-10 68.6 46 71.7
Eucgr.E00914 Eucalyptus grandis HOM05D003558 ORTHO05D004392 1.5e-09 65.9 42 73.8
CSS0026608 Camellia sinensis var. sinensis HOM05D027468 ORTHO05D109376 4.3e-09 64.3 29 89.7
CSS0042415 Camellia sinensis var. sinensis HOM05D027468 ORTHO05D112199 1.8e-07 58.9 29 82.8
CSS0047259 Camellia sinensis var. sinensis HOM05D027468 ORTHO05D109356 5.3e-07 57.4 29 82.8
Eucgr.E00681 Eucalyptus grandis HOM05D003558 ORTHO05D004392 5.9e-06 53.9 34 79.4


User provided reference genes

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