Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 5.7e-175 617.5 307 100.0
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 6.4e-134 481.1 289 82.4
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 2.3e-131 472.6 314 78.3
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 2.1e-129 466.1 329 73.9
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 3.6e-121 438.7 301 74.4
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 6.6e-115 417.9 302 69.9
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 3.2e-109 399.1 301 66.4
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 1.5e-106 390.2 301 65.8
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 2.8e-105 386.0 306 66.0
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 2.8e-105 386.0 306 64.7
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 8.1e-105 384.4 302 66.2
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 1.4e-104 383.6 302 65.6
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 3.1e-104 382.5 306 65.7
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 3.1e-104 382.5 306 67.3
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 4.0e-104 382.1 308 64.6
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 6.8e-104 381.3 303 65.3
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 2.9e-102 375.9 303 62.4
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 3.8e-102 375.6 305 63.6
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 3.8e-102 375.6 296 66.2
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 3.8e-102 375.6 304 65.8
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 2.4e-101 372.9 304 66.1
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 3.2e-101 372.5 305 63.6
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 4.2e-101 372.1 315 61.9
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 1.6e-100 370.2 291 64.3
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 7.8e-100 367.9 304 64.1
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 3.9e-99 365.5 307 64.8
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.9e-98 363.2 296 65.9
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 3.3e-98 362.5 304 60.5
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 8.1e-97 357.8 304 61.5
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 5.3e-96 355.1 297 60.3
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 5.3e-96 355.1 290 62.1
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 2.0e-95 353.2 323 58.5
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 4.5e-95 352.1 307 60.9
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 5.8e-95 351.7 299 61.2
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 7.6e-95 351.3 295 61.7
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 1.3e-94 350.5 297 59.3
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 1.7e-94 350.1 303 58.4
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 2.2e-94 349.7 298 59.4
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 4.9e-94 348.6 301 60.1
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 8.4e-94 347.8 308 59.7
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 1.1e-93 347.4 297 59.9
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 4.2e-93 345.5 275 65.5
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 4.2e-93 345.5 305 62.3
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 5.4e-93 345.1 297 59.3
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 1.2e-92 344.0 297 59.3
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 1.2e-92 344.0 299 61.2
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 3.5e-92 342.4 301 58.5
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 1.7e-91 340.1 306 58.2
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 2.3e-91 339.7 302 59.6
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 8.7e-91 337.8 297 58.2
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 1.9e-90 336.7 306 57.5
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 4.3e-90 335.5 295 60.0
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 4.3e-90 335.5 296 60.1
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 9.6e-90 334.3 314 56.1
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 8.1e-89 331.3 297 57.9
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 2.4e-88 329.7 288 58.7
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 5.3e-88 328.6 297 59.3
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 5.3e-88 328.6 305 56.4
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 5.3e-88 328.6 280 65.0
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 4.5e-87 325.5 302 57.6
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 2.9e-86 322.8 311 57.2
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 3.8e-86 322.4 301 57.1
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 3.8e-86 322.4 311 57.2
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 6.4e-86 321.6 306 57.5
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 2.4e-85 319.7 316 53.8
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 2.4e-85 319.7 307 58.0
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 1.2e-84 317.4 300 56.0
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 1.2e-84 317.4 306 57.2
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 3.5e-84 315.8 297 59.3
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 7.9e-84 314.7 310 55.2
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 1.3e-83 313.9 305 55.7
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 6.7e-83 311.6 293 56.0
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 5.6e-82 308.5 303 56.8
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 9.6e-82 307.8 301 56.8
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 8.1e-81 304.7 277 58.8
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 3.1e-80 302.8 305 55.4
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 6.9e-80 301.6 297 56.9
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 1.2e-79 300.8 285 56.8
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 1.5e-79 300.4 283 57.6
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 1.0e-78 297.7 223 66.8
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 1.0e-78 297.7 298 55.7
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 7.1e-77 291.6 349 46.7
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 1.2e-76 290.8 297 55.2
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 1.2e-76 290.8 299 55.9
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 3.7e-73 279.3 287 55.1
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 1.7e-70 270.4 174 74.7
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 4.2e-69 265.8 264 54.2
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 1.8e-67 260.4 298 50.7
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 3.9e-67 259.2 183 74.3
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 1.1e-66 257.7 327 49.2
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 5.3e-64 248.8 172 67.4
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 1.5e-63 247.3 185 68.6
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 2.0e-63 246.9 287 49.8
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 2.0e-63 246.9 300 48.3
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 1.9e-61 240.4 293 46.1
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 6.1e-60 235.3 301 45.8
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 1.3e-57 227.6 290 45.5
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 1.7e-57 227.3 287 48.4
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 4.8e-57 225.7 152 71.7
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.1e-56 223.0 160 68.8
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 2.1e-52 210.3 296 44.6
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 1.0e-51 208.0 302 40.1
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 1.1e-50 204.5 277 44.8
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 4.4e-50 202.6 121 77.7
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.8e-49 199.9 118 78.0
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 8.2e-49 198.4 302 41.7
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 2.0e-47 193.7 304 43.1
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 5.0e-46 189.1 323 41.2
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 1.1e-45 188.0 294 41.2
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.2e-44 184.5 222 50.0
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 2.1e-44 183.7 286 40.2
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 4.7e-44 182.6 305 39.0
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 4.0e-43 179.5 301 37.9
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 5.2e-43 179.1 198 54.5
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 6.7e-43 178.7 100 85.0
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 3.3e-42 176.4 338 34.9
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 2.8e-41 173.3 103 80.6
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.6e-39 167.5 338 34.0
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 3.5e-39 166.4 172 53.5
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 7.2e-37 158.7 115 62.6
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 1.2e-36 157.9 95 81.1
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 2.7e-36 156.8 214 45.3
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 3.6e-36 156.4 298 36.9
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 8.0e-36 155.2 212 44.3
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 2.8e-33 146.7 123 61.8
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 1.7e-30 137.5 164 47.0
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 4.9e-25 119.4 145 47.6
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 6.3e-25 119.0 97 58.8
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.4e-24 117.9 145 46.9
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 1.4e-19 101.3 209 37.3
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 5.2e-19 99.4 56 87.5
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 3.7e-17 93.2 50 82.0
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 4.6e-15 86.3 50 80.0
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.0e-14 83.6 122 41.0
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 1.1e-08 65.1 74 50.0
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 2.7e-07 60.5 98 39.8
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 1.0e-06 58.5 71 42.3
arahy.Tifrunner.gnm1.ann1.G1CRI5 Arachis hypogaea HOM05D000992 ORTHO05D001928 5.0e-06 56.2 62 48.4
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 8.6e-06 55.5 60 50.0


User provided reference genes

Program Settings