Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 4.2e-37 157.5 80 100.0
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 3.0e-27 124.8 73 89.0
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 6.7e-27 123.6 73 87.7
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 5.7e-26 120.6 73 83.6
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 3.7e-25 117.9 73 80.8
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 4.8e-25 117.5 73 79.5
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 1.4e-24 115.9 73 79.5
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 4.1e-24 114.4 73 78.1
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 6.9e-24 113.6 68 82.4
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.0e-23 112.1 73 76.7
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 2.0e-23 112.1 73 74.0
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.6e-23 111.7 68 80.9
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 7.7e-23 110.2 73 75.3
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 1.0e-22 109.8 73 75.3
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 1.0e-22 109.8 73 75.3
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.7e-22 109.0 73 72.6
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.7e-22 109.0 73 72.6
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 1.7e-22 109.0 73 74.0
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 2.9e-22 108.2 73 75.3
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 2.9e-22 108.2 73 71.2
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.8e-22 107.8 73 71.2
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 5.0e-22 107.5 73 72.6
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 5.0e-22 107.5 73 75.3
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 6.5e-22 107.1 73 72.6
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 8.5e-22 106.7 73 72.6
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 1.1e-21 106.3 73 71.2
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 1.4e-21 105.9 73 72.6
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.5e-21 105.1 73 71.2
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.5e-21 105.1 73 71.2
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.5e-21 105.1 73 71.2
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.5e-21 105.1 73 71.2
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 2.5e-21 105.1 73 69.9
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.5e-21 105.1 73 72.6
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.5e-21 105.1 73 72.6
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 2.5e-21 105.1 75 70.7
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 2.5e-21 105.1 73 71.2
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 3.2e-21 104.8 73 72.6
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 4.2e-21 104.4 73 68.5
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 4.2e-21 104.4 73 69.9
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 4.2e-21 104.4 73 68.5
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 5.5e-21 104.0 73 71.2
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 5.5e-21 104.0 73 68.5
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 5.5e-21 104.0 73 71.2
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 5.5e-21 104.0 73 68.5
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 5.5e-21 104.0 74 70.3
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 7.2e-21 103.6 73 69.9
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 7.2e-21 103.6 73 72.6
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 7.2e-21 103.6 73 72.6
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 1.2e-20 102.8 68 75.0
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 1.2e-20 102.8 73 68.5
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 1.2e-20 102.8 73 65.8
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 1.6e-20 102.4 73 69.9
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 1.6e-20 102.4 73 69.9
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 1.6e-20 102.4 73 69.9
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 1.6e-20 102.4 68 69.1
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 1.6e-20 102.4 69 71.0
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.1e-20 102.1 73 69.9
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 2.7e-20 101.7 73 67.1
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 3.6e-20 101.3 70 72.9
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 4.7e-20 100.9 73 65.8
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 6.1e-20 100.5 73 68.5
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 6.1e-20 100.5 73 68.5
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 6.1e-20 100.5 68 72.1
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 6.1e-20 100.5 73 67.1
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 7.9e-20 100.1 68 76.5
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 1.0e-19 99.8 74 67.6
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 1.0e-19 99.8 74 67.6
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.0e-19 99.8 74 67.6
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 1.0e-19 99.8 75 65.3
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 1.8e-19 99.0 73 69.9
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 1.8e-19 99.0 75 62.7
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.8e-19 99.0 75 62.7
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.8e-19 99.0 75 62.7
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 1.8e-19 99.0 75 68.0
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 1.8e-19 99.0 75 68.0
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 1.8e-19 99.0 73 69.9
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.8e-19 99.0 73 69.9
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 1.8e-19 99.0 68 72.1
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 2.3e-19 98.6 73 67.1
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 2.3e-19 98.6 73 65.8
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.3e-19 98.6 75 62.7
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 3.9e-19 97.8 68 69.1
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.9e-19 97.8 75 62.7
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.9e-19 97.8 73 67.1
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 3.9e-19 97.8 73 67.1
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 3.9e-19 97.8 70 68.6
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 5.1e-19 97.4 73 61.6
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 6.7e-19 97.1 70 68.6
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 1.1e-18 96.3 73 63.0
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.5e-18 95.9 73 65.8
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 1.5e-18 95.9 68 67.6
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.5e-18 95.9 73 68.5
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 3.3e-18 94.7 71 64.8
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 3.3e-18 94.7 74 67.6
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 3.3e-18 94.7 73 60.3
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 3.3e-18 94.7 69 62.3
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 4.4e-18 94.4 71 63.4
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 5.7e-18 94.0 70 64.3
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 5.7e-18 94.0 68 63.2
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 5.7e-18 94.0 69 69.6
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 5.7e-18 94.0 73 63.0
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 7.4e-18 93.6 68 64.7
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 9.7e-18 93.2 68 63.2
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 9.7e-18 93.2 70 64.3
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 9.7e-18 93.2 73 58.9
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.3e-17 92.8 73 65.8
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 1.7e-17 92.4 73 60.3
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 1.7e-17 92.4 68 61.8
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 1.7e-17 92.4 75 64.0
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 3.7e-17 91.3 68 61.8
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 3.7e-17 91.3 68 63.2
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 6.3e-17 90.5 68 60.3
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 6.3e-17 90.5 73 58.9
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 6.3e-17 90.5 73 58.9
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 6.3e-17 90.5 68 60.3
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 2.4e-16 88.6 68 58.8
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 4.1e-16 87.8 66 62.1
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 5.3e-16 87.4 68 64.7
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.2e-15 86.3 68 64.7
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 1.2e-15 86.3 59 67.8
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 2.0e-15 85.5 60 66.7
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 2.6e-15 85.1 72 63.9
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 2.6e-15 85.1 73 57.5
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 1.7e-14 82.4 66 56.1
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 3.8e-14 81.3 66 54.5
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 3.2e-13 78.2 70 60.0
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 4.2e-13 77.8 97 44.3
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 7.2e-13 77.0 77 48.1
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.4e-11 72.8 57 64.9
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 5.2e-11 70.9 73 46.6
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.1e-10 69.7 44 70.5
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 7.5e-10 67.0 73 45.2
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 7.5e-10 67.0 73 45.2
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.7e-09 65.9 49 65.3
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 1.7e-09 65.9 41 75.6
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 3.7e-09 64.7 73 42.5
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 6.3e-09 63.9 67 44.8
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.8e-08 62.4 70 50.0


User provided reference genes

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