Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039152 Camellia sinensis var. sinensis HOM05D006190 ORTHO05D008260 0.0e+00 1155.2 569 100.0
Dinv39750 Davidia involucrata HOM05D006190 ORTHO05D008260 1.7e-286 988.8 569 83.1
Actinidia09748 Actinidia chinensis HOM05D006190 ORTHO05D008260 3.0e-286 988.0 566 84.5
vmacro12161 Vaccinium macrocarpon HOM05D006190 ORTHO05D008260 4.0e-283 977.6 568 83.1
Rhsim04G0034400 Rhododendron simsii HOM05D006190 ORTHO05D008260 7.8e-279 963.4 569 81.4
Rhsim06G0167400 Rhododendron simsii HOM05D006190 ORTHO05D008260 2.6e-274 948.3 569 80.5
Thecc.01G182400 Theobroma cacao HOM05D006190 ORTHO05D008260 3.2e-272 941.4 569 78.6
TWI36G1256 Tripterygium wilfordii HOM05D006190 ORTHO05D008260 3.9e-270 934.5 566 77.9
MD17G1106200 Malus domestica HOM05D006190 ORTHO05D008260 6.6e-270 933.7 567 77.2
GSVIVG01030506001 Vitis vinifera HOM05D006190 ORTHO05D008260 1.1e-269 932.9 567 77.1
Gohir.D07G088600 Gossypium hirsutum HOM05D006190 ORTHO05D008260 1.3e-268 929.5 568 77.3
Gohir.A07G082100 Gossypium hirsutum HOM05D006190 ORTHO05D008260 3.6e-268 927.9 568 77.3
Gorai.001G095000 Gossypium raimondii HOM05D006190 ORTHO05D008260 8.1e-268 926.8 568 77.3
Prupe.3G210000 Prunus persica HOM05D006190 ORTHO05D008260 1.4e-267 926.0 567 77.1
Potri.002G224300 Populus trichocarpa HOM05D006190 ORTHO05D008260 1.2e-266 922.9 567 77.4
Manes.13G065900 Manihot esculenta HOM05D006190 ORTHO05D008260 2.7e-263 911.8 570 76.8
Lj1A781G46 Lonicera japonica HOM05D006190 ORTHO05D008260 5.1e-262 907.5 566 76.3
FAN14G2650 Fragaria x ananassa HOM05D006190 ORTHO05D008260 2.8e-260 901.7 571 75.1
RcHm_v2.0_Chr2g0158021 Rosa chinensis HOM05D006190 ORTHO05D008260 1.1e-259 899.8 568 75.7
FAN02G1605 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.4e-259 899.4 571 75.3
Sopen05g026250 Solanum pennellii HOM05D006190 ORTHO05D008260 1.4e-259 899.4 567 76.0
Ciclev10017756m.g Citrus clementina HOM05D006190 ORTHO05D008260 1.2e-258 896.3 563 75.3
Sabra02G0171700 Salix brachista HOM05D006190 ORTHO05D008260 9.9e-258 893.3 584 73.6
Sed0027843 Sechium edule HOM05D006190 ORTHO05D008260 9.9e-258 893.3 568 73.6
Nn1g07299 Nelumbo nucifera HOM05D006190 ORTHO05D008260 1.3e-257 892.9 566 74.4
PGR083G2874 Punica granatum HOM05D006190 ORTHO05D008260 7.1e-256 887.1 566 74.6
CsaV3_6G037760 Cucumis sativus L. HOM05D006190 ORTHO05D008260 7.9e-255 883.6 568 73.6
ClCG09G011200 Citrullus lanatus HOM05D006190 ORTHO05D008260 1.8e-254 882.5 568 73.4
Atru.chr6.3259 Acer truncatum HOM05D006190 ORTHO05D008260 1.9e-253 879.0 565 73.5
MD09G1114700 Malus domestica HOM05D006190 ORTHO05D008260 2.8e-252 875.2 604 69.0
FAN05G0691 Fragaria x ananassa HOM05D006190 ORTHO05D008260 6.2e-252 874.0 622 69.0
Rhsim04G0027600 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.1e-251 873.2 570 75.8
Cfa014317 Carpinus fangiana HOM05D006190 ORTHO05D008260 1.4e-251 872.8 527 78.6
HanXRQChr03g0075981 Helianthus annuus HOM05D006190 ORTHO05D008260 1.4e-251 872.8 563 73.9
DCAR_019742 Daucus carota HOM05D006190 ORTHO05D008260 3.2e-248 861.7 566 71.9
Nitab4.5_0006063g0030 Nicotiana tabacum HOM05D006190 ORTHO05D008260 5.5e-248 860.9 571 73.2
FvH4_6g42100 Fragaria vesca HOM05D006190 ORTHO05D008260 6.0e-247 857.4 547 74.4
THA.LOC104798591 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 2.8e-244 848.6 565 70.6
EL10Ac8g20037 Beta vulgaris HOM05D006190 ORTHO05D008260 3.7e-244 848.2 566 71.2
THA.LOC104800883 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 3.7e-244 848.2 562 70.5
MSTRG.8117 Avicennia marina HOM05D006190 ORTHO05D008260 1.4e-243 846.3 563 72.3
Solyc05g042120.4 Solanum lycopersicum HOM05D006190 ORTHO05D008260 2.6e-242 842.0 528 76.5
Sc06g0009680 Simmondsia chinensis HOM05D006190 ORTHO05D008260 3.4e-242 841.6 570 70.7
Thhalv10016459m.g Eutrema salsugineum HOM05D006190 ORTHO05D008260 5.0e-241 837.8 562 69.8
arahy.Tifrunner.gnm1.ann1.BBUS42 Arachis hypogaea HOM05D006190 ORTHO05D008260 6.5e-241 837.4 566 70.8
arahy.Tifrunner.gnm1.ann1.5R2QIE Arachis hypogaea HOM05D006190 ORTHO05D008260 1.9e-240 835.9 566 70.7
Carub.0004s1265 Capsella rubella HOM05D006190 ORTHO05D008260 1.6e-239 832.8 562 70.1
AL4G26570 Arabidopsis lyrata HOM05D006190 ORTHO05D008260 3.6e-239 831.6 562 69.6
BcaC02g11229 Brassica carinata HOM05D006190 ORTHO05D008260 3.6e-239 831.6 563 70.0
AT2G31340 Arabidopsis thaliana HOM05D006190 ORTHO05D008260 6.1e-239 830.9 562 69.8
ECA240G2645 Erigeron canadensis HOM05D006190 ORTHO05D008260 3.0e-238 828.6 567 69.8
Migut.F01671 Erythranthe guttata HOM05D006190 ORTHO05D008260 6.7e-238 827.4 562 71.7
Sp4g13810 Schrenkiella parvula HOM05D006190 ORTHO05D008260 1.1e-237 826.6 562 69.6
Haze_12765 Corylus avellana HOM05D006190 ORTHO05D008260 4.2e-232 808.1 575 69.9
Aqoxy3G00055 Aquilegia oxysepala HOM05D006190 ORTHO05D008260 7.9e-231 803.9 569 67.8
Lalb_Chr04g0264321 Lupinus albus HOM05D006190 ORTHO05D008260 1.0e-230 803.5 566 69.1
Glyma.20G058400 Glycine max HOM05D006190 ORTHO05D008260 1.4e-230 803.1 561 68.8
Lsat_1_v5_gn_9_105860 Lactuca sativa HOM05D006190 ORTHO05D008260 2.6e-229 798.9 504 74.8
PSO675G0778 Papaver somniferum HOM05D006190 ORTHO05D008260 7.4e-229 797.3 569 67.7
Phvul.006G013000 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 3.7e-228 795.0 566 68.0
PSO541G5374 Papaver somniferum HOM05D006190 ORTHO05D008260 6.3e-228 794.3 569 67.5
Aa31LG5G5620 Aethionema arabicum HOM05D006190 ORTHO05D008260 1.8e-227 792.7 527 70.4
Phvul.011G111400 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 9.1e-227 790.4 566 68.2
Peaxi162Scf00100g01525 Petunia axillaris HOM05D006190 ORTHO05D008260 1.2e-226 790.0 526 72.4
BcaB02g10385 Brassica carinata HOM05D006190 ORTHO05D008260 5.9e-226 787.7 527 70.6
Medtr3g080550 Medicago truncatula HOM05D006190 ORTHO05D008260 1.7e-225 786.2 562 67.3
Nitab4.5_0000019g0350 Nicotiana tabacum HOM05D006190 ORTHO05D008260 6.1e-223 777.7 529 71.8
Eucgr.A01784 Eucalyptus grandis HOM05D006190 ORTHO05D008260 6.7e-222 774.2 566 66.8
Lj6g0020329 Lotus japonicus HOM05D006190 ORTHO05D008260 1.3e-220 770.0 564 66.7
Hund00609 Selenicereus undatus HOM05D006190 ORTHO05D008260 1.3e-220 770.0 561 67.7
Ca_16289_v3 Cicer arietinum L. HOM05D006190 ORTHO05D008260 4.8e-220 768.1 525 70.9
SGA_v2.0_scaffold13G06447 Striga asiatica HOM05D006190 ORTHO05D008260 2.4e-219 765.8 527 70.0
MELO3C014435.2 Cucumis melo HOM05D006190 ORTHO05D008260 6.1e-215 751.1 593 63.9
Rhsim04G0033900 Rhododendron simsii HOM05D006190 ORTHO05D008260 6.7e-214 747.7 481 76.5
COL.COLO4_21885 Corchorus olitorius HOM05D006190 ORTHO05D008260 7.7e-210 734.2 463 74.9
Eucgr.K00752 Eucalyptus grandis HOM05D006190 ORTHO05D008260 3.8e-209 731.9 460 76.3
HPP92_020505 Vanilla planifolia HOM05D006190 ORTHO05D008260 3.8e-209 731.9 563 62.7
CiPaw.03G155000 Carya illinoinensis HOM05D006190 ORTHO05D008260 6.5e-209 731.1 460 75.9
MBI19_g03678_MAGBIO Magnolia biondii HOM05D006190 ORTHO05D008260 8.0e-207 724.2 543 66.1
QL08p030638 Quercus lobata HOM05D006190 ORTHO05D008260 7.7e-202 707.6 495 70.1
Cpa.g.sc132.24 Carica papaya HOM05D006190 ORTHO05D008260 8.9e-190 667.5 723 51.3
Ah.06g190910 Amaranthus hybridus HOM05D006190 ORTHO05D008260 2.3e-185 652.9 566 57.6
unitig_46.g18456 Utricularia gibba HOM05D006190 ORTHO05D008260 1.1e-184 650.6 600 56.7
Lsat_1_v5_gn_2_93981 Lactuca sativa HOM05D006190 ORTHO05D008260 2.8e-183 646.0 481 67.2
Os09g0296400 Oryza sativa ssp. japonica HOM05D006190 ORTHO05D008260 4.7e-183 645.2 566 55.7
AUR62006846 Chenopodium quinoa HOM05D006190 ORTHO05D008260 4.9e-180 635.2 528 60.8
AUR62000500 Chenopodium quinoa HOM05D006190 ORTHO05D008260 3.2e-179 632.5 528 60.8
ATR0736G101 Amborella trichopoda HOM05D006190 ORTHO05D008260 7.0e-179 631.3 588 54.9
Zm00001eb309080 Zea mays HOM05D006190 ORTHO05D008260 1.9e-168 596.7 530 55.1
TPR.G342 Trifolium pratense HOM05D006190 ORTHO05D008260 9.9e-157 557.8 405 67.9
Psat5g111200 Pisum sativum HOM05D006190 ORTHO05D008260 7.4e-136 488.4 300 74.7
Oeu015050.1 Olea europaea HOM05D006190 ORTHO05D008260 6.9e-126 455.3 321 70.7
TAR020G0003 Trochodendron aralioides HOM05D006190 ORTHO05D008260 1.3e-124 451.1 319 68.3
A05p14270 Brassica napus HOM05D006190 ORTHO05D008260 5.5e-123 445.7 318 68.2
CDE07G0814 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 1.3e-119 434.5 284 69.0
Pp3c23_22000 Physcomitrium patens HOM05D006190 ORTHO05D008260 1.3e-119 434.5 596 41.3
SHI10054 Sapria himalayana HOM05D006190 ORTHO05D000001 1.3e-116 424.5 339 59.9
VMungo1127G1525 Vigna mungo HOM05D006190 ORTHO05D008260 3.8e-116 422.9 410 54.1
Mapoly0014s0084 Marchantia polymorpha HOM05D006190 ORTHO05D008260 3.6e-106 389.8 593 36.6
Aa31sc34G90 Aethionema arabicum HOM05D006190 ORTHO05D008260 2.0e-104 384.0 259 68.3
CARHR124960 Cardamine hirsuta HOM05D006190 ORTHO05D008260 3.8e-100 369.8 270 66.3
CAN.G795.2 Capsicum annuum HOM05D006190 ORTHO05D008260 1.2e-98 364.8 265 67.9
FAN18G3300 Fragaria x ananassa HOM05D006190 ORTHO05D008260 3.6e-98 363.2 267 68.5
Psat5g111240 Pisum sativum HOM05D006190 ORTHO05D008260 7.2e-91 339.0 274 62.4
TPR.G18389 Trifolium pratense HOM05D006190 ORTHO05D008260 5.0e-84 316.2 204 72.1
SEGI_33791 Sequoiadendron giganteum HOM05D006190 ORTHO05D008260 4.0e-81 306.6 244 57.4
SHI10056 Sapria himalayana HOM05D006190 ORTHO05D008260 2.4e-70 270.8 193 64.2
Oeu015049.1 Olea europaea HOM05D006190 ORTHO05D008260 1.9e-67 261.2 165 77.6
Sopen11g022430 Solanum pennellii HOM05D006190 ORTHO05D008260 4.0e-65 253.4 211 60.2
C04p19010 Brassica napus HOM05D006190 ORTHO05D008260 1.1e-62 245.4 191 62.8
THA.LOC104822845 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 2.7e-61 240.7 140 75.0
CBR_g25881 Chara braunii HOM05D006190 ORTHO05D008260 3.0e-60 237.3 690 29.3
TPR.G36458 Trifolium pratense HOM05D006190 ORTHO05D008260 2.7e-53 214.2 185 57.3
Sabra14G0120600 Salix brachista HOM05D006190 ORTHO05D008260 1.5e-48 198.4 170 60.6
FAN10G3459 Fragaria x ananassa HOM05D006190 ORTHO05D008260 2.5e-43 181.0 146 65.1
BcaC01g05972 Brassica carinata HOM05D006190 ORTHO05D008260 7.3e-43 179.5 168 54.8
QL08p030629 Quercus lobata HOM05D006190 ORTHO05D027094 5.1e-36 156.8 85 84.7
Lsat_1_v5_gn_5_72540 Lactuca sativa HOM05D006190 ORTHO05D008260 1.6e-34 151.8 94 72.3
C03p20570 Brassica napus HOM05D006190 ORTHO05D008260 2.3e-28 131.3 148 49.3
CDE04G2645 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 1.1e-22 112.5 119 49.6
Hund15364 Selenicereus undatus HOM05D006190 ORTHO05D027094 1.1e-17 95.9 50 88.0
BcaC01g05961 Brassica carinata HOM05D006190 ORTHO05D008260 1.3e-15 89.0 88 52.3
Lsat_1_v5_gn_1_125520 Lactuca sativa HOM05D006190 ORTHO05D008260 1.3e-12 79.0 64 59.4
BcaC02g11231 Brassica carinata HOM05D006190 ORTHO05D027094 8.2e-10 69.7 43 72.1
BcaB01g04050 Brassica carinata HOM05D006190 ORTHO05D008260 2.2e-07 61.6 65 50.8
Rhsim04G0034300 Rhododendron simsii HOM05D001260 ORTHO05D004134 5.5e-06 57.0 38 63.2


User provided reference genes

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