Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 7.9e-77 290.4 152 100.0
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 3.0e-76 288.5 152 98.7
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 3.2e-54 215.3 153 71.2
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 4.5e-48 194.9 155 62.6
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 5.9e-48 194.5 150 74.0
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 5.0e-47 191.4 150 73.3
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 3.2e-46 188.7 154 71.4
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 3.2e-46 188.7 154 71.4
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 3.2e-46 188.7 154 71.4
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 1.8e-44 183.0 151 61.6
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 3.3e-43 178.7 153 67.3
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 4.4e-43 178.3 163 57.1
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 4.4e-43 178.3 151 65.6
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 5.7e-43 177.9 156 61.5
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 9.7e-43 177.2 153 69.3
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 9.7e-43 177.2 149 59.7
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 2.2e-42 176.0 163 65.0
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 4.8e-42 174.9 147 68.7
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 4.8e-42 174.9 156 60.9
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 6.3e-42 174.5 164 57.3
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 1.4e-41 173.3 163 55.8
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 1.8e-41 172.9 163 55.8
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 4.1e-41 171.8 153 58.2
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 4.1e-41 171.8 163 63.8
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 5.3e-41 171.4 164 58.5
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 1.2e-40 170.2 150 66.0
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 2.0e-40 169.5 163 62.6
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 7.7e-40 167.5 161 61.5
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 1.0e-39 167.2 163 62.0
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 1.7e-39 166.4 153 59.5
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 2.9e-39 165.6 142 59.9
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 2.9e-39 165.6 147 59.2
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 3.8e-39 165.2 154 55.8
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 1.1e-38 163.7 150 56.0
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.1e-38 163.7 151 64.2
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.5e-38 163.3 154 56.5
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 1.9e-38 162.9 157 56.7
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.9e-38 162.9 141 59.6
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 2.5e-38 162.5 154 56.5
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 2.5e-38 162.5 162 61.1
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 2.5e-38 162.5 162 64.2
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 3.2e-38 162.2 163 54.0
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 4.2e-38 161.8 157 56.1
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 4.2e-38 161.8 157 56.1
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 5.5e-38 161.4 93 78.5
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 7.2e-38 161.0 147 63.3
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 7.2e-38 161.0 157 56.7
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 7.2e-38 161.0 152 55.3
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 7.2e-38 161.0 154 56.5
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 7.2e-38 161.0 162 61.7
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 9.4e-38 160.6 162 58.0
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 1.2e-37 160.2 150 55.3
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 1.6e-37 159.8 135 62.2
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 2.1e-37 159.5 157 56.7
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 2.7e-37 159.1 153 54.2
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 2.7e-37 159.1 161 59.0
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 4.7e-37 158.3 153 53.6
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 4.7e-37 158.3 155 56.1
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 6.1e-37 157.9 155 54.8
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 6.1e-37 157.9 140 56.4
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 8.0e-37 157.5 145 54.5
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 1.0e-36 157.1 155 53.5
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 2.3e-36 156.0 144 55.6
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 2.3e-36 156.0 145 57.9
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 3.0e-36 155.6 141 59.6
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 4.0e-36 155.2 152 56.6
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 5.2e-36 154.8 142 62.0
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 5.2e-36 154.8 166 61.4
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 6.7e-36 154.5 163 58.9
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 6.7e-36 154.5 160 52.5
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 8.8e-36 154.1 149 61.1
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 1.2e-35 153.7 136 65.4
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.6e-35 152.5 143 53.8
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 4.4e-35 151.8 143 63.6
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 4.4e-35 151.8 134 64.9
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 7.5e-35 151.0 157 59.2
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 7.5e-35 151.0 161 58.4
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 9.7e-35 150.6 142 59.9
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 9.7e-35 150.6 155 52.3
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 1.3e-34 150.2 166 54.2
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 2.8e-34 149.1 128 59.4
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 2.8e-34 149.1 128 56.2
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 3.7e-34 148.7 143 58.7
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 4.8e-34 148.3 120 69.2
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 4.8e-34 148.3 120 69.2
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 4.8e-34 148.3 153 53.6
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 6.3e-34 147.9 145 60.7
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 1.1e-33 147.1 83 75.9
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.1e-33 147.1 105 68.6
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 1.4e-33 146.7 133 63.2
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.4e-33 146.0 143 61.5
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 2.4e-33 146.0 96 71.9
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 3.1e-33 145.6 162 57.4
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 5.3e-33 144.8 145 62.1
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 5.3e-33 144.8 142 64.1
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 7.0e-33 144.4 142 61.3
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 9.1e-33 144.1 143 53.1
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 1.2e-32 143.7 154 59.7
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 2.0e-32 142.9 85 75.3
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 2.7e-32 142.5 145 60.0
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 3.5e-32 142.1 139 53.2
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 4.5e-32 141.7 123 65.9
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 5.9e-32 141.4 148 52.7
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 2.2e-31 139.4 145 59.3
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 2.2e-31 139.4 144 59.7
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 6.5e-31 137.9 150 53.3
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 6.5e-31 137.9 91 67.0
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 2.5e-30 136.0 153 58.8
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 4.2e-30 135.2 150 57.3
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 5.5e-30 134.8 140 60.7
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 9.4e-30 134.0 169 48.5
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 4.7e-29 131.7 150 58.7
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 6.8e-28 127.9 157 49.7
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 2.6e-27 125.9 135 60.0
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 7.5e-27 124.4 119 65.5
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 1.3e-26 123.6 113 66.4
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 1.4e-25 120.2 167 46.1
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 2.4e-25 119.4 89 62.9
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 9.1e-25 117.5 155 47.1
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 4.5e-24 115.2 101 54.5
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 5.9e-24 114.8 140 44.3
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 7.7e-24 114.4 113 60.2
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.9e-23 112.5 169 42.6
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 5.0e-23 111.7 155 43.9
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 5.5e-22 108.2 75 68.0
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 9.5e-22 107.5 54 77.8
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 1.3e-18 97.1 86 58.1
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 6.3e-18 94.7 144 43.8
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 1.1e-17 94.0 76 55.3
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 7.0e-17 91.3 75 49.3
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 1.2e-16 90.5 112 42.9
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 1.6e-16 90.1 74 52.7
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 5.9e-16 88.2 163 45.4
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 2.5e-14 82.8 86 62.8
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 9.5e-14 80.9 103 55.3
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 2.8e-13 79.3 79 57.0
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 1.0e-12 77.4 135 35.6
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 1.5e-11 73.6 78 42.3
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 1.3e-07 60.5 40 60.0
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 5.0e-07 58.5 48 52.1
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 2.5e-06 56.2 46 58.7
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 4.3e-06 55.5 45 60.0
MCO15G631 Micromonas commoda HOM05D005372 ORTHO05D006593 5.6e-06 55.1 101 31.7


User provided reference genes

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