Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039097 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 4.5e-121 438.0 222 100.0
CSS0028155 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 2.3e-109 399.1 213 96.2
Actinidia10743 Actinidia chinensis HOM05D005193 ORTHO05D006316 4.9e-35 152.1 109 73.4
RhsimUnG0248800 Rhododendron simsii HOM05D005193 ORTHO05D006316 2.1e-33 146.7 100 75.0
Dinv40781 Davidia involucrata HOM05D005193 ORTHO05D006316 2.8e-30 136.3 92 73.9
QL08p009116 Quercus lobata HOM05D005193 ORTHO05D006316 1.3e-27 127.5 126 57.1
Gohir.D01G069100 Gossypium hirsutum HOM05D005193 ORTHO05D006316 6.4e-27 125.2 94 66.0
TAR627G0707 Trochodendron aralioides HOM05D005193 ORTHO05D006316 6.4e-27 125.2 104 63.5
Gohir.A01G082500 Gossypium hirsutum HOM05D005193 ORTHO05D006316 1.1e-26 124.4 94 66.0
Hma1.2p1_0036F.1_g023390 Hydrangea macrophylla HOM05D005193 ORTHO05D006316 1.1e-26 124.4 91 68.1
GSVIVG01037690001 Vitis vinifera HOM05D005193 ORTHO05D006316 3.2e-26 122.9 90 65.6
Thecc.07G032100 Theobroma cacao HOM05D005193 ORTHO05D006316 9.2e-26 121.3 87 69.0
Gorai.002G091400 Gossypium raimondii HOM05D005193 ORTHO05D006316 1.2e-25 120.9 94 64.9
Haze_09711 Corylus avellana HOM05D005193 ORTHO05D006316 2.7e-25 119.8 104 61.5
Duzib268G1225 Durio zibethinus HOM05D005193 ORTHO05D006316 6.0e-25 118.6 87 64.4
MD03G1197400 Malus domestica HOM05D005193 ORTHO05D006316 1.0e-24 117.9 89 67.4
Ciclev10007388m.g Citrus clementina HOM05D005193 ORTHO05D006316 2.5e-23 113.2 99 60.6
CiPaw.11G192300 Carya illinoinensis HOM05D005193 ORTHO05D006316 4.3e-23 112.5 126 51.6
Lsat_1_v5_gn_7_111080 Lactuca sativa HOM05D005193 ORTHO05D006316 4.3e-23 112.5 94 58.5
RcHm_v2.0_Chr5g0040821 Rosa chinensis HOM05D005193 ORTHO05D006316 4.3e-23 112.5 90 63.3
FAN21G2135 Fragaria x ananassa HOM05D005193 ORTHO05D006316 5.6e-23 112.1 90 63.3
FAN11G0281 Fragaria x ananassa HOM05D005193 ORTHO05D006316 7.3e-23 111.7 90 63.3
Potri.001G356700 Populus trichocarpa HOM05D005193 ORTHO05D006316 7.3e-23 111.7 90 60.0
TWI38G1184 Tripterygium wilfordii HOM05D005193 ORTHO05D006316 7.3e-23 111.7 90 63.3
Atru.chr2.3490 Acer truncatum HOM05D005193 ORTHO05D006316 1.2e-22 110.9 90 64.4
MBI07_g09089_MAGBIO Magnolia biondii HOM05D005193 ORTHO05D006316 2.1e-22 110.2 105 57.1
FAN16G1885 Fragaria x ananassa HOM05D005193 ORTHO05D006316 2.8e-22 109.8 90 63.3
PSO210G7537 Papaver somniferum HOM05D005193 ORTHO05D006316 2.8e-22 109.8 92 54.3
Sabra16G0234700 Salix brachista HOM05D005193 ORTHO05D006316 3.6e-22 109.4 90 57.8
CANSAT11G2467 Cannabis sativa HOM05D005193 ORTHO05D006316 6.2e-22 108.6 88 61.4
HanXRQChr11g0335911 Helianthus annuus HOM05D005193 ORTHO05D006316 6.2e-22 108.6 90 60.0
Manes.15G068700 Manihot esculenta HOM05D005193 ORTHO05D006316 6.2e-22 108.6 94 61.7
ECA236G2682 Erigeron canadensis HOM05D005193 ORTHO05D006316 1.4e-21 107.5 90 56.7
Nn1g03454 Nelumbo nucifera HOM05D005193 ORTHO05D006316 1.8e-21 107.1 101 55.4
PSO832G1529 Papaver somniferum HOM05D005193 ORTHO05D006316 1.8e-21 107.1 89 55.1
Ca_11685_v3 Cicer arietinum L. HOM05D005193 ORTHO05D006316 5.2e-21 105.5 87 59.8
Eucgr.F03483 Eucalyptus grandis HOM05D005193 ORTHO05D006316 5.2e-21 105.5 96 58.3
Nitab4.5_0000168g0230 Nicotiana tabacum HOM05D005193 ORTHO05D006316 1.2e-20 104.4 92 55.4
MSTRG.6941 Avicennia marina HOM05D005193 ORTHO05D006316 1.5e-20 104.0 94 56.4
Aqoxy4G01697 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 2.6e-20 103.2 92 52.2
PGR031G1204 Punica granatum HOM05D005193 ORTHO05D006316 2.6e-20 103.2 90 58.9
Sed0015549 Sechium edule HOM05D005193 ORTHO05D006316 2.6e-20 103.2 143 44.1
ClCG09G010950 Citrullus lanatus HOM05D005193 ORTHO05D006316 3.4e-20 102.8 90 58.9
Glyma.14G021300 Glycine max HOM05D005193 ORTHO05D006316 4.4e-20 102.4 87 58.6
Phvul.008G270200 Phaseolus vulgaris HOM05D005193 ORTHO05D006316 7.6e-20 101.7 87 57.5
VMungo0647G2043 Vigna mungo HOM05D005193 ORTHO05D006316 7.6e-20 101.7 91 57.1
Nitab4.5_0003450g0030 Nicotiana tabacum HOM05D005193 ORTHO05D006316 9.9e-20 101.3 92 53.3
COL.COLO4_09693 Corchorus olitorius HOM05D005193 ORTHO05D006316 1.3e-19 100.9 123 48.0
MELO3C013149.2 Cucumis melo HOM05D005193 ORTHO05D006316 2.2e-19 100.1 93 55.9
Medtr1g056460 Medicago truncatula HOM05D005193 ORTHO05D006316 2.2e-19 100.1 87 57.5
AT1G50730 Arabidopsis thaliana HOM05D005193 ORTHO05D006316 2.9e-19 99.8 88 53.4
BraA06t23495Z Brassica rapa HOM05D005193 ORTHO05D006316 4.9e-19 99.0 95 51.6
CsaV3_7G021980 Cucumis sativus L. HOM05D005193 ORTHO05D006316 4.9e-19 99.0 98 54.1
Solyc12g005090.3 Solanum lycopersicum HOM05D005193 ORTHO05D006316 4.9e-19 99.0 90 53.3
Sopen12g001090 Solanum pennellii HOM05D005193 ORTHO05D006316 4.9e-19 99.0 90 53.3
Aqoxy1G03394 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 6.4e-19 98.6 92 50.0
TPR.G2822 Trifolium pratense HOM05D005193 ORTHO05D006316 6.4e-19 98.6 87 58.6
BcaB07g33512 Brassica carinata HOM05D005193 ORTHO05D006316 8.4e-19 98.2 86 54.7
Thhalv10011218m.g Eutrema salsugineum HOM05D005193 ORTHO05D006316 1.1e-18 97.8 86 53.5
Psat6g078440 Pisum sativum HOM05D005193 ORTHO05D006316 1.1e-18 97.8 87 57.5
Peaxi162Scf00660g00119 Petunia axillaris HOM05D005193 ORTHO05D006316 1.4e-18 97.4 90 53.3
Lalb_Chr17g0348631 Lupinus albus HOM05D005193 ORTHO05D006316 1.9e-18 97.1 89 55.1
arahy.Tifrunner.gnm1.ann1.J5TE7C Arachis hypogaea HOM05D005193 ORTHO05D006316 2.4e-18 96.7 95 50.5
BcaC08g43253 Brassica carinata HOM05D005193 ORTHO05D006316 2.4e-18 96.7 87 54.0
C06p05990 Brassica napus HOM05D005193 ORTHO05D006316 2.4e-18 96.7 87 54.0
BolC6t35712H Brassica oleracea HOM05D005193 ORTHO05D006316 2.4e-18 96.7 87 54.0
Carub.0001s3976 Capsella rubella HOM05D005193 ORTHO05D006316 4.2e-18 95.9 86 51.2
Cpa.g.sc12.275 Carica papaya HOM05D005193 ORTHO05D006316 4.2e-18 95.9 73 63.0
THA.LOC104816145 Tarenaya hassleriana HOM05D005193 ORTHO05D006316 5.4e-18 95.5 88 52.3
arahy.Tifrunner.gnm1.ann1.K04HM7 Arachis hypogaea HOM05D005193 ORTHO05D006316 7.1e-18 95.1 95 49.5
Sp1g37570 Schrenkiella parvula HOM05D005193 ORTHO05D006316 7.1e-18 95.1 86 52.3
LjContig00272g0004657 Lotus japonicus HOM05D005193 ORTHO05D006316 9.3e-18 94.7 95 50.5
A06p02890 Brassica napus HOM05D005193 ORTHO05D006316 3.5e-17 92.8 90 51.1
Migut.M01736 Erythranthe guttata HOM05D005193 ORTHO05D006316 7.8e-17 91.7 87 56.3
Prupe.4G218100 Prunus persica HOM05D005193 ORTHO05D006316 3.0e-16 89.7 75 61.3
Cc05_g14020 Coffea canephora HOM05D005193 ORTHO05D006316 7.3e-15 85.1 93 43.0
FAN25G0346 Fragaria x ananassa HOM05D005193 ORTHO05D006316 3.6e-14 82.8 62 62.9
FAN25G2894 Fragaria x ananassa HOM05D005193 ORTHO05D006316 8.1e-14 81.6 62 61.3
Ah.06g182590 Amaranthus hybridus HOM05D005193 ORTHO05D006316 2.4e-13 80.1 100 46.0
CDE02G0254 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 2.4e-13 80.1 86 48.8
ATR0585G071 Amborella trichopoda HOM05D005193 ORTHO05D006316 3.1e-13 79.7 89 46.1
arahy.Tifrunner.gnm1.ann1.BLY3DW Arachis hypogaea HOM05D005193 ORTHO05D006316 3.1e-13 79.7 55 67.3
AUR62015820 Chenopodium quinoa HOM05D005193 ORTHO05D006316 4.0e-13 79.3 102 45.1
AUR62020399 Chenopodium quinoa HOM05D005193 ORTHO05D006316 2.6e-12 76.6 102 44.1
Aa31LG10G3620 Aethionema arabicum HOM05D005193 ORTHO05D006316 2.2e-11 73.6 72 50.0
Oeu041837.1 Olea europaea HOM05D005193 ORTHO05D006316 8.4e-11 71.6 56 60.7
Aqoxy4G00029 Aquilegia oxysepala HOM05D002071 ORTHO05D002109 1.6e-09 67.4 114 34.2
HPP92_008858 Vanilla planifolia HOM05D005193 ORTHO05D006316 2.7e-09 66.6 107 38.3
Mapoly0038s0063 Marchantia polymorpha HOM05D005193 ORTHO05D006316 3.9e-08 62.8 91 33.0
SalBow8G0199 Salvia bowleyana HOM05D005193 ORTHO05D006316 6.7e-08 62.0 59 52.5
CARHR040830 Cardamine hirsuta HOM05D005193 ORTHO05D006316 1.1e-07 61.2 56 50.0
Hund02002 Selenicereus undatus HOM05D005193 ORTHO05D006316 1.5e-07 60.8 60 50.0


User provided reference genes

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