Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 4.1e-113 411.4 202 100.0
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 1.4e-102 376.3 201 90.0
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 9.7e-99 363.6 202 86.1
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 2.2e-98 362.5 200 85.0
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 1.4e-97 359.8 202 84.2
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 5.3e-97 357.8 202 84.2
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 2.6e-96 355.5 198 84.3
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 3.5e-96 355.1 198 83.3
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 5.9e-96 354.4 198 83.3
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 5.9e-96 354.4 203 82.8
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 3.8e-95 351.7 225 76.4
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 3.8e-95 351.7 197 83.8
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 6.5e-95 350.9 197 85.3
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 8.5e-95 350.5 201 82.1
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 8.5e-95 350.5 198 82.3
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 1.1e-94 350.1 198 82.3
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 1.1e-94 350.1 201 81.6
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 1.5e-94 349.7 199 83.9
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 2.5e-94 349.0 201 81.1
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 5.5e-94 347.8 197 83.8
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 5.5e-94 347.8 201 81.6
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 7.2e-94 347.4 196 84.7
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 9.4e-94 347.1 201 81.6
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 1.6e-93 346.3 197 83.2
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 6.1e-93 344.4 198 83.3
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 1.4e-92 343.2 185 88.1
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 8.8e-92 340.5 191 81.7
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.5e-91 339.7 193 82.9
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.5e-91 339.7 193 82.9
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 2.0e-91 339.3 195 83.6
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 4.4e-91 338.2 198 81.3
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 5.7e-91 337.8 193 82.4
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 5.7e-91 337.8 201 78.6
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 7.5e-91 337.4 201 79.6
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 7.5e-91 337.4 197 80.7
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.3e-90 336.7 193 82.4
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 1.3e-90 336.7 192 83.9
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 2.2e-90 335.9 186 84.4
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 4.8e-90 334.7 198 79.8
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 1.1e-89 333.6 202 78.7
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 1.1e-89 333.6 201 79.1
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 1.4e-89 333.2 195 81.5
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 1.8e-89 332.8 196 81.6
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 3.1e-89 332.0 202 79.2
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 4.1e-89 331.6 197 78.7
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 4.1e-89 331.6 202 77.7
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 9.1e-89 330.5 199 77.9
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 1.2e-88 330.1 186 83.3
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 1.6e-88 329.7 215 75.3
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 1.6e-88 329.7 215 75.3
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 2.7e-88 328.9 202 78.7
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 2.7e-88 328.9 190 82.1
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 3.5e-88 328.6 192 79.7
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 4.5e-88 328.2 200 76.0
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 4.5e-88 328.2 190 81.6
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 5.9e-88 327.8 218 72.0
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 1.3e-87 326.6 202 78.7
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 1.7e-87 326.2 202 77.7
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 2.9e-87 325.5 202 77.7
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 5.0e-87 324.7 190 80.5
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 5.0e-87 324.7 198 77.8
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 1.1e-86 323.6 202 77.7
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 1.5e-86 323.2 195 78.5
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 3.2e-86 322.0 205 77.1
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 4.2e-86 321.6 182 84.1
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 5.5e-86 321.2 199 77.4
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 5.5e-86 321.2 198 76.8
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 7.2e-86 320.9 198 76.8
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 9.4e-86 320.5 202 75.7
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 1.2e-85 320.1 197 78.7
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 1.2e-85 320.1 201 76.6
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 1.6e-85 319.7 201 75.1
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 2.1e-85 319.3 190 78.9
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 4.7e-85 318.2 203 75.9
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 4.7e-85 318.2 190 80.5
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 6.1e-85 317.8 189 79.4
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 8.0e-85 317.4 195 75.4
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 1.8e-84 316.2 203 76.4
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 1.8e-84 316.2 203 76.4
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 1.8e-84 316.2 193 76.7
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 2.3e-84 315.8 189 79.4
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 6.8e-84 314.3 202 75.2
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 1.5e-83 313.2 186 84.4
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 2.2e-82 309.3 192 74.5
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 4.8e-82 308.1 215 70.2
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 6.3e-82 307.8 215 71.2
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 5.9e-80 301.2 194 73.7
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 1.7e-79 299.7 186 76.9
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 3.8e-79 298.5 201 70.6
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 6.8e-76 287.7 185 76.2
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 4.4e-67 258.5 184 65.8
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 1.9e-65 253.1 137 86.1
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 2.8e-61 239.2 188 60.6
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 8.0e-61 237.7 191 60.2
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 4.9e-58 228.4 167 70.1
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 4.1e-57 225.3 186 57.0
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 7.3e-54 214.5 119 84.0
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 4.7e-53 211.8 187 53.5
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 1.1e-52 210.7 130 73.8
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 5.2e-52 208.4 191 53.9
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 5.8e-51 204.9 119 81.5
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 7.1e-49 198.0 110 86.4
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 3.9e-47 192.2 111 81.1
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 6.6e-47 191.4 166 53.6
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 2.4e-44 183.0 118 73.7
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 4.4e-43 178.7 117 75.2
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 7.8e-40 167.9 123 71.5
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 2.1e-37 159.8 95 80.0
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.2e-35 154.1 83 89.2
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.2e-35 154.1 83 89.2
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 2.0e-35 153.3 94 76.6
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 7.6e-35 151.4 94 71.3
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 2.1e-16 90.1 148 34.5
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 1.8e-12 77.0 56 64.3
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 1.5e-11 73.9 55 65.5
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 1.4e-09 67.4 171 26.9
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 9.3e-09 64.7 42 64.3
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 2.1e-08 63.5 124 26.6
RcHm_v2.0_Chr4g0411411 Rosa chinensis HOM05D006384 ORTHO05D007917 6.1e-08 62.0 48 66.7
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 1.3e-07 60.8 49 57.1
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.3e-07 60.1 168 24.4
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 6.7e-07 58.5 169 24.3
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 6.7e-07 58.5 168 22.0
FAN14G2601 Fragaria x ananassa HOM05D006384 ORTHO05D007917 8.7e-07 58.2 75 46.7
FAN14G5547 Fragaria x ananassa HOM05D006384 ORTHO05D007917 8.7e-07 58.2 75 46.7
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 1.9e-06 57.0 173 24.9
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 2.5e-06 56.6 168 22.0
Cre12.g527850 Chlamydomonas reinhardtii HOM05D006384 ORTHO05D007917 3.3e-06 56.2 123 26.8
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 7.4e-06 55.1 168 21.4


User provided reference genes

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