Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.8e-210 735.7 390 100.0
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 7.6e-209 730.3 391 99.5
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 1.4e-165 586.6 359 78.0
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 2.3e-165 585.9 386 75.9
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 1.5e-164 583.2 357 78.7
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 4.4e-164 581.6 381 74.0
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 4.9e-163 578.2 385 74.3
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 3.1e-162 575.5 358 79.1
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 4.1e-162 575.1 295 92.5
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 5.9e-161 571.2 393 73.0
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 1.7e-160 569.7 359 75.5
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.3e-160 569.3 393 72.8
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.0e-160 568.2 358 76.0
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 8.6e-160 567.4 393 72.8
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 2.5e-159 565.8 393 70.2
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 5.5e-159 564.7 361 74.2
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 1.2e-158 563.5 346 78.0
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 4.0e-157 558.5 358 75.1
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 4.0e-157 558.5 347 76.9
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 5.2e-157 558.1 364 74.2
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 2.6e-156 555.8 360 73.6
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 3.4e-156 555.4 361 74.5
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 1.3e-155 553.5 390 72.8
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.7e-155 553.1 359 74.4
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 1.7e-155 553.1 390 69.5
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 4.9e-155 551.6 350 74.6
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 6.3e-155 551.2 359 73.8
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 1.1e-154 550.4 359 73.8
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.8e-154 549.7 358 74.0
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 2.4e-154 549.3 357 73.7
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 3.2e-154 548.9 381 72.4
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 7.0e-154 547.7 358 73.7
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 2.0e-153 546.2 361 73.4
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 2.7e-153 545.8 357 73.7
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 3.5e-153 545.4 360 72.8
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 1.7e-152 543.1 360 72.2
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 5.0e-152 541.6 357 72.8
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 1.1e-151 540.4 357 73.1
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.1e-151 540.4 357 73.1
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 1.1e-151 540.4 361 72.9
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.5e-151 540.0 336 76.8
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 3.3e-151 538.9 361 73.4
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 4.3e-151 538.5 357 72.3
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 9.5e-151 537.3 349 74.2
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 4.7e-150 535.0 362 70.4
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 6.1e-150 534.6 359 72.7
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 8.0e-150 534.3 361 70.9
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 8.0e-150 534.3 357 71.4
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 2.3e-149 532.7 360 70.8
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 5.2e-149 531.6 387 69.8
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 2.0e-148 529.6 395 65.6
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 2.6e-148 529.3 347 74.1
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 4.4e-148 528.5 360 69.7
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 5.8e-148 528.1 346 74.6
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 9.8e-148 527.3 358 70.9
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 9.8e-148 527.3 362 69.6
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.7e-147 526.6 358 70.9
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.2e-147 526.2 358 71.5
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 2.9e-147 525.8 359 70.5
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 4.9e-147 525.0 358 71.2
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 6.4e-147 524.6 388 66.0
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 6.4e-147 524.6 387 66.1
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 6.4e-147 524.6 357 71.4
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 2.4e-146 522.7 360 70.0
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 2.4e-146 522.7 360 70.0
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 3.2e-146 522.3 388 65.7
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 4.1e-146 521.9 347 72.3
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 9.2e-146 520.8 346 73.1
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 9.2e-146 520.8 386 66.1
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 9.2e-146 520.8 386 66.1
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 1.2e-145 520.4 388 66.2
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 2.7e-145 519.2 389 67.1
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 2.7e-145 519.2 326 74.8
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 3.5e-145 518.8 386 65.5
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 4.6e-145 518.5 388 65.5
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 4.6e-145 518.5 371 69.0
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 6.0e-145 518.1 386 65.8
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 3.9e-144 515.4 389 65.3
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 3.9e-144 515.4 355 71.5
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 5.0e-144 515.0 397 67.5
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 6.6e-144 514.6 367 69.2
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.1e-143 513.8 363 69.4
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.1e-143 513.8 332 73.5
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.1e-143 513.8 362 69.1
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 1.9e-143 513.1 362 69.1
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 4.3e-143 511.9 360 67.8
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 5.6e-143 511.5 361 68.7
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 5.6e-143 511.5 359 69.4
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 1.6e-142 510.0 361 69.3
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 4.7e-142 508.4 360 68.1
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 6.2e-142 508.1 346 72.0
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 1.8e-141 506.5 386 64.8
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 1.8e-141 506.5 353 70.5
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 1.8e-141 506.5 360 68.3
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 6.8e-141 504.6 360 68.3
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 6.8e-141 504.6 360 66.4
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 8.9e-141 504.2 357 67.8
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 1.5e-140 503.4 360 68.1
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 2.6e-140 502.7 348 71.8
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 2.6e-140 502.7 359 68.8
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 4.4e-140 501.9 392 64.3
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 2.9e-139 499.2 347 69.7
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 1.9e-138 496.5 360 68.3
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 4.1e-138 495.4 356 68.5
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 4.1e-138 495.4 294 78.2
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 2.1e-137 493.0 338 72.5
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 3.5e-137 492.3 358 65.4
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 1.0e-136 490.7 358 66.5
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 5.1e-136 488.4 335 71.3
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 3.3e-135 485.7 357 68.1
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 7.3e-135 484.6 360 65.3
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 2.1e-134 483.0 365 67.1
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 7.1e-130 468.0 350 66.3
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.7e-129 466.1 341 65.7
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 2.9e-123 446.0 367 61.3
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 6.4e-123 444.9 366 60.9
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 7.8e-121 438.0 356 61.8
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 2.3e-120 436.4 325 66.2
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.3e-120 436.4 295 68.8
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.3e-119 432.6 233 85.4
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 1.1e-117 427.6 334 62.3
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.4e-117 427.2 336 62.5
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 2.0e-116 423.3 315 65.7
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 3.8e-115 419.1 338 63.0
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 7.9e-113 411.4 281 72.2
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 7.9e-113 411.4 359 57.9
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.3e-111 406.0 293 68.3
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 3.8e-107 392.5 305 60.7
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 2.7e-105 386.3 361 55.7
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.5e-103 380.6 198 88.4
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 9.6e-103 377.9 206 85.4
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 3.1e-101 372.9 337 55.8
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 4.2e-98 362.5 315 59.4
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 1.8e-93 347.1 198 78.3
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 1.1e-90 337.8 219 73.1
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 1.0e-88 331.3 177 85.9
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 1.4e-85 320.9 231 66.7
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.4e-80 304.3 233 66.1
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.5e-76 289.3 229 63.3
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 2.9e-75 286.6 390 40.3
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.2e-74 283.1 264 53.8
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 9.7e-71 271.6 300 44.3
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 1.6e-68 264.2 338 41.4
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 2.0e-68 263.8 221 60.2
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 8.8e-64 248.4 223 56.5
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 2.0e-60 237.3 295 42.7
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 1.3e-51 208.0 194 56.2
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 2.1e-49 200.7 328 36.9
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 2.7e-49 200.3 125 76.8
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.4e-37 161.4 148 58.1
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 6.6e-27 125.9 101 61.4
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.6e-25 120.2 64 84.4
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.4e-23 113.2 113 52.2
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 5.4e-21 106.3 57 80.7
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 8.4e-06 55.8 43 60.5


User provided reference genes

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