Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.0e-234 816.6 488 100.0
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 2.5e-201 705.7 493 88.8
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 3.6e-147 525.8 353 96.9
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 5.7e-145 518.5 501 64.9
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 8.5e-141 504.6 503 66.4
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 8.3e-136 488.0 498 61.2
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 3.1e-135 486.1 412 70.9
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 9.5e-132 474.6 528 61.6
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 9.5e-124 448.0 492 57.9
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 1.3e-120 437.6 477 63.9
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 1.6e-115 420.6 417 60.9
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 6.4e-112 408.7 407 60.0
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 6.4e-112 408.7 411 61.3
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 2.4e-111 406.8 414 62.6
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 3.2e-111 406.4 413 59.3
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 1.6e-110 404.1 414 59.7
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 5.0e-109 399.1 411 58.9
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 1.5e-108 397.5 421 59.1
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 2.5e-108 396.7 417 55.4
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 3.3e-108 396.4 412 58.7
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 5.6e-108 395.6 422 58.8
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 7.3e-108 395.2 413 58.4
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 3.6e-107 392.9 494 59.5
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 4.7e-107 392.5 414 56.8
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 4.7e-107 392.5 498 59.0
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 6.2e-107 392.1 418 56.0
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 6.2e-107 392.1 415 59.0
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 4.0e-106 389.4 412 57.3
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 2.0e-105 387.1 416 58.9
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 8.3e-104 381.7 397 57.2
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 2.4e-103 380.2 333 66.7
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 2.4e-103 380.2 422 57.6
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 4.1e-103 379.4 459 52.3
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 1.6e-102 377.5 504 52.2
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 2.7e-102 376.7 374 62.0
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 7.8e-102 375.2 361 63.4
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 1.3e-101 374.4 341 66.3
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 3.0e-101 373.2 411 57.4
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 5.1e-101 372.5 529 47.3
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 1.1e-100 371.3 412 54.4
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 4.3e-100 369.4 429 52.0
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 5.6e-100 369.0 528 49.6
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 7.3e-100 368.6 362 61.0
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 9.5e-100 368.2 331 66.2
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 2.1e-99 367.1 535 46.7
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 6.8e-98 362.1 530 49.1
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 4.4e-97 359.4 442 54.3
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 7.6e-97 358.6 412 58.5
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 7.6e-97 358.6 417 55.6
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 7.6e-97 358.6 439 49.7
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 4.9e-96 355.9 523 47.6
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 1.4e-95 354.4 206 85.0
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 2.4e-95 353.6 414 55.6
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 7.1e-95 352.1 396 55.8
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 2.7e-94 350.1 439 52.2
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 1.7e-93 347.4 373 57.4
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 3.0e-93 346.7 416 51.4
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 5.1e-93 345.9 454 48.7
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 5.1e-93 345.9 396 51.5
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 6.6e-93 345.5 405 56.0
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 6.6e-93 345.5 427 52.7
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 4.3e-92 342.8 429 52.0
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 5.6e-92 342.4 420 53.8
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 7.3e-92 342.0 345 60.0
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 4.7e-91 339.3 417 54.0
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.4e-90 337.8 425 51.1
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 1.4e-90 337.8 501 51.3
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 8.9e-90 335.1 518 47.5
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 2.0e-89 334.0 519 48.7
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 3.4e-89 333.2 424 48.8
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 1.7e-88 330.9 375 54.1
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 2.3e-85 320.5 416 51.0
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 1.1e-84 318.2 388 50.0
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 1.9e-84 317.4 426 49.1
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 7.3e-84 315.5 421 47.5
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 3.1e-82 310.1 383 55.1
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 5.3e-82 309.3 307 62.2
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 2.6e-81 307.0 408 48.8
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 2.9e-80 303.5 456 43.9
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 6.4e-80 302.4 428 44.2
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 1.1e-79 301.6 535 44.1
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 4.2e-79 299.7 535 44.9
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 5.4e-79 299.3 458 43.4
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 1.2e-78 298.1 434 47.7
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.6e-78 297.7 429 45.2
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 2.1e-78 297.4 433 46.0
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 4.6e-78 296.2 407 48.2
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 7.9e-78 295.4 456 42.1
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 3.0e-77 293.5 401 48.1
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 6.7e-77 292.4 427 46.4
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 2.5e-76 290.4 335 50.7
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 9.6e-76 288.5 439 47.2
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 1.3e-75 288.1 463 43.2
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 5.3e-74 282.7 424 45.3
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 5.3e-74 282.7 450 45.1
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 1.2e-73 281.6 412 44.4
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 3.4e-73 280.0 473 41.9
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 3.4e-73 280.0 441 43.8
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 1.7e-72 277.7 369 49.9
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 8.4e-72 275.4 422 45.3
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 1.1e-71 275.0 422 45.3
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 4.2e-71 273.1 415 44.6
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 1.2e-70 271.6 426 42.5
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 2.3e-69 267.3 448 41.5
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 3.9e-69 266.5 423 44.2
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 2.9e-64 250.4 192 60.4
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 1.3e-61 241.5 310 56.1
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 1.6e-59 234.6 596 34.6
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 2.6e-57 227.3 165 64.8
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 7.4e-52 209.1 140 69.3
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 6.3e-51 206.1 177 57.6
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 6.3e-51 206.1 177 57.6
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 8.2e-43 179.1 324 41.0
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 1.1e-39 168.7 139 59.7
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 7.2e-39 166.0 107 72.0
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 6.1e-38 162.9 90 84.4
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 5.2e-37 159.8 116 66.4
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 8.0e-30 136.0 91 71.4
Actinidia26205 Actinidia chinensis HOM05D002505 ORTHO05D006559 1.3e-27 128.6 250 44.0
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 2.4e-26 124.4 155 38.1
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 1.7e-24 118.2 143 41.3
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 3.2e-23 114.0 64 84.4
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 1.6e-22 111.7 315 28.9
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 1.3e-19 102.1 281 39.5
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 8.3e-19 99.4 63 74.6
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 1.8e-18 98.2 62 77.4
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 9.1e-18 95.9 62 72.6
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 2.3e-16 91.3 82 51.2
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 6.5e-16 89.7 63 69.8
Sopen01g041600 Solanum pennellii HOM05D002505 ORTHO05D006559 3.6e-14 84.0 265 44.9


User provided reference genes

Program Settings