Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039069 Camellia sinensis var. sinensis HOM05D005232 ORTHO05D006389 1.2e-49 199.5 100 100.0
Cc02_g11150 Coffea canephora HOM05D005232 ORTHO05D006389 3.0e-32 141.7 98 71.4
Actinidia06757 Actinidia chinensis HOM05D005232 ORTHO05D006389 1.5e-31 139.4 99 70.7
Actinidia22445 Actinidia chinensis HOM05D005232 ORTHO05D006389 1.5e-31 139.4 99 69.7
Oeu014380.1 Olea europaea HOM05D005232 ORTHO05D006389 2.0e-28 129.0 101 66.3
Prupe.2G298500 Prunus persica HOM05D005232 ORTHO05D006389 4.4e-28 127.9 100 65.0
RcHm_v2.0_Chr2g0116381 Rosa chinensis HOM05D005232 ORTHO05D006389 9.9e-28 126.7 101 68.3
GSVIVG01028893001 Vitis vinifera HOM05D005232 ORTHO05D006389 1.9e-26 122.5 90 67.8
Sabra15G0156100 Salix brachista HOM05D005232 ORTHO05D006389 4.2e-26 121.3 100 64.0
Potri.012G144400 Populus trichocarpa HOM05D005232 ORTHO05D006389 9.3e-26 120.2 100 65.0
Ciclev10004180m.g Citrus clementina HOM05D005232 ORTHO05D006389 1.2e-25 119.8 98 65.3
Thecc.08G165200 Theobroma cacao HOM05D005232 ORTHO05D006389 1.2e-25 119.8 93 66.7
Dinv28407 Davidia involucrata HOM05D005232 ORTHO05D006389 2.1e-25 119.0 74 81.1
MSTRG.8138 Avicennia marina HOM05D005232 ORTHO05D006389 2.7e-25 118.6 100 63.0
CSS0049575 Camellia sinensis var. sinensis HOM05D005232 ORTHO05D006389 2.7e-25 118.6 97 63.9
FAN26G0882 Fragaria x ananassa HOM05D005232 ORTHO05D006389 6.0e-25 117.5 101 64.4
FAN23G0292 Fragaria x ananassa HOM05D005232 ORTHO05D006389 5.1e-24 114.4 101 63.4
Gohir.A07G074600 Gossypium hirsutum HOM05D005232 ORTHO05D006389 8.7e-24 113.6 100 63.0
Gohir.D07G079300 Gossypium hirsutum HOM05D005232 ORTHO05D006389 8.7e-24 113.6 100 63.0
Gorai.001G083900 Gossypium raimondii HOM05D005232 ORTHO05D006389 8.7e-24 113.6 100 63.0
SalBow7G4258 Salvia bowleyana HOM05D005232 ORTHO05D006389 1.1e-23 113.2 98 60.2
FAN19G1688 Fragaria x ananassa HOM05D005232 ORTHO05D006389 1.9e-23 112.5 101 61.4
TAR375G0877 Trochodendron aralioides HOM05D005232 ORTHO05D006389 1.9e-23 112.5 99 60.6
FAN28G2294 Fragaria x ananassa HOM05D005232 ORTHO05D006389 3.3e-23 111.7 101 64.4
Nitab4.5_0013274g0010 Nicotiana tabacum HOM05D005232 ORTHO05D006389 4.3e-23 111.3 100 63.0
Glyma.10G232300 Glycine max HOM05D005232 ORTHO05D006389 7.3e-23 110.5 100 58.0
CiPaw.05G164300 Carya illinoinensis HOM05D005232 ORTHO05D006389 9.6e-23 110.2 100 59.0
Glyma.20G161800 Glycine max HOM05D005232 ORTHO05D006389 1.6e-22 109.4 100 57.0
Oeu041197.1 Olea europaea HOM05D005232 ORTHO05D006389 1.6e-22 109.4 84 64.3
MD07G1276200 Malus domestica HOM05D005232 ORTHO05D006389 2.8e-22 108.6 101 57.4
TPR.G26976 Trifolium pratense HOM05D005232 ORTHO05D006389 4.8e-22 107.8 101 61.4
Nn1g01560 Nelumbo nucifera HOM05D005232 ORTHO05D006389 1.1e-21 106.7 99 55.6
QL09p013403 Quercus lobata HOM05D005232 ORTHO05D006389 1.4e-21 106.3 99 63.6
FvH4_1g22240 Fragaria vesca HOM05D005232 ORTHO05D006389 1.8e-21 105.9 101 59.4
Nitab4.5_0007148g0020 Nicotiana tabacum HOM05D005232 ORTHO05D006389 3.1e-21 105.1 96 61.5
VMungo0720G1404 Vigna mungo HOM05D005232 ORTHO05D006389 5.3e-21 104.4 100 58.0
Cfa016269 Carpinus fangiana HOM05D005232 ORTHO05D006389 9.0e-21 103.6 83 63.9
Potri.015G147200 Populus trichocarpa HOM05D005232 ORTHO05D006389 9.0e-21 103.6 92 60.9
Manes.14G024000 Manihot esculenta HOM05D005232 ORTHO05D006389 5.8e-20 100.9 78 66.7
Atru.chr1.399 Acer truncatum HOM05D005232 ORTHO05D006389 7.6e-20 100.5 100 56.0
MSTRG.380 Avicennia marina HOM05D005232 ORTHO05D006389 9.9e-20 100.1 100 53.0
TAR629G2045 Trochodendron aralioides HOM05D005232 ORTHO05D006389 2.2e-19 99.0 99 50.5
Eucgr.C03422 Eucalyptus grandis HOM05D005232 ORTHO05D006389 2.9e-19 98.6 100 53.0
Phvul.007G073300 Phaseolus vulgaris HOM05D005232 ORTHO05D006389 2.9e-19 98.6 93 55.9
ECA233G2984 Erigeron canadensis HOM05D005232 ORTHO05D006389 8.4e-19 97.1 100 56.0
Hund04775 Selenicereus undatus HOM05D005232 ORTHO05D006389 1.1e-18 96.7 100 57.0
Ca_10736_v3 Cicer arietinum L. HOM05D005232 ORTHO05D006389 1.4e-18 96.3 101 55.4
Cpa.g.sc42.154 Carica papaya HOM05D005232 ORTHO05D006389 1.9e-18 95.9 76 65.8
PGSC0003DMG401023336 Solanum tuberosum HOM05D005232 ORTHO05D006389 2.4e-18 95.5 87 59.8
Psat6g193720 Pisum sativum HOM05D005232 ORTHO05D006389 3.2e-18 95.1 96 57.3
Haze_00026 Corylus avellana HOM05D005232 ORTHO05D006389 9.3e-18 93.6 85 58.8
TWI39G1086 Tripterygium wilfordii HOM05D005232 ORTHO05D006389 3.5e-17 91.7 78 60.3
Ah.07g201890 Amaranthus hybridus HOM05D005232 ORTHO05D006389 7.9e-17 90.5 99 55.6
arahy.Tifrunner.gnm1.ann1.IW4QJC Arachis hypogaea HOM05D005232 ORTHO05D006389 7.9e-17 90.5 99 53.5
arahy.Tifrunner.gnm1.ann1.JBBQ4L Arachis hypogaea HOM05D005232 ORTHO05D006389 7.9e-17 90.5 99 53.5
Medtr1g100210 Medicago truncatula HOM05D005232 ORTHO05D006389 7.9e-17 90.5 92 57.6
AUR62021146 Chenopodium quinoa HOM05D005232 ORTHO05D006389 1.3e-16 89.7 90 56.7
AUR62031391 Chenopodium quinoa HOM05D005232 ORTHO05D006389 1.3e-16 89.7 90 56.7
Aqoxy7G00280 Aquilegia oxysepala HOM05D005232 ORTHO05D006389 3.0e-16 88.6 99 49.5
DCAR_006428 Daucus carota HOM05D005232 ORTHO05D006389 5.1e-16 87.8 101 49.5
Lj5g0027810 Lotus japonicus HOM05D005232 ORTHO05D006389 5.1e-16 87.8 95 52.6
Aa31LG9G12010 Aethionema arabicum HOM05D005232 ORTHO05D006389 1.5e-15 86.3 81 59.3
ClCG07G016960 Citrullus lanatus HOM05D005232 ORTHO05D006389 4.3e-15 84.7 90 51.1
MELO3C017648.2 Cucumis melo HOM05D005232 ORTHO05D006389 1.3e-14 83.2 89 49.4
Solyc05g056220.3 Solanum lycopersicum HOM05D005232 ORTHO05D006389 2.1e-14 82.4 90 53.3
HanXRQChr08g0218691 Helianthus annuus HOM05D005232 ORTHO05D006389 1.1e-13 80.1 100 50.0
Lalb_Chr02g0141181 Lupinus albus HOM05D005232 ORTHO05D006389 1.1e-13 80.1 93 50.5
TPR.G22241 Trifolium pratense HOM05D005232 ORTHO05D006389 2.4e-13 79.0 90 53.3
CsaV3_4G004180 Cucumis sativus L. HOM05D005232 ORTHO05D006389 4.0e-13 78.2 91 48.4
Hund11728 Selenicereus undatus HOM05D005232 ORTHO05D006389 4.0e-13 78.2 99 50.5
PGR102G0407 Punica granatum HOM05D005232 ORTHO05D006389 5.8e-12 74.3 74 55.4
EL10Ac3g05588 Beta vulgaris HOM05D005232 ORTHO05D006389 2.9e-11 72.0 78 52.6
Lj8A722G14 Lonicera japonica HOM05D005232 ORTHO05D006389 3.8e-11 71.6 99 43.4
Nitab4.5_0009827g0020 Nicotiana tabacum HOM05D005232 ORTHO05D006389 3.8e-11 71.6 46 69.6
Peaxi162Scf00858g00214 Petunia axillaris HOM05D005232 ORTHO05D006389 3.8e-11 71.6 56 60.7
PSO528G0151 Papaver somniferum HOM05D005232 ORTHO05D006389 8.4e-11 70.5 89 48.3
Migut.F01728 Erythranthe guttata HOM05D005232 ORTHO05D006389 1.1e-10 70.1 93 51.6
Nitab4.5_0000582g0120 Nicotiana tabacum HOM05D005232 ORTHO05D006389 1.4e-10 69.7 46 67.4
AT4G09980 Arabidopsis thaliana HOM05D005232 ORTHO05D006389 5.5e-10 67.8 91 52.7
BcaC04g21005 Brassica carinata HOM05D005232 ORTHO05D006389 5.5e-10 67.8 89 53.9
C09p36730 Brassica napus HOM05D005232 ORTHO05D006389 5.5e-10 67.8 89 53.9
BolC9t56504H Brassica oleracea HOM05D005232 ORTHO05D006389 5.5e-10 67.8 89 53.9
PSO170G2956 Papaver somniferum HOM05D005232 ORTHO05D006389 5.5e-10 67.8 89 46.1
Lsat_1_v5_gn_8_20461 Lactuca sativa HOM05D005232 ORTHO05D006389 1.2e-09 66.6 102 48.0
A09p28930 Brassica napus HOM05D005232 ORTHO05D006389 2.1e-09 65.9 89 52.8
BraA09t38457Z Brassica rapa HOM05D005232 ORTHO05D006389 2.1e-09 65.9 89 52.8
Sed0005714 Sechium edule HOM05D005232 ORTHO05D006389 4.6e-09 64.7 92 46.7
BcaB01g01438 Brassica carinata HOM05D005232 ORTHO05D006389 6.0e-09 64.3 91 51.6
PGSC0003DMG402023336 Solanum tuberosum HOM05D005232 ORTHO05D006389 6.0e-09 64.3 60 48.3
Carub.0006s2852 Capsella rubella HOM05D005232 ORTHO05D006389 1.0e-08 63.5 89 51.7
CARHR260960 Cardamine hirsuta HOM05D005232 ORTHO05D006389 1.8e-08 62.8 99 47.5
CAN.G694.95 Capsicum annuum HOM05D005232 ORTHO05D006389 3.0e-08 62.0 51 54.9
THA.LOC104811969 Tarenaya hassleriana HOM05D005232 ORTHO05D006389 8.7e-08 60.5 82 47.6
AL6G43680 Arabidopsis lyrata HOM05D005232 ORTHO05D006389 1.9e-07 59.3 91 48.4


User provided reference genes

Program Settings