Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.6e-103 378.3 194 100.0
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.8e-69 266.5 219 70.3
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 7.1e-65 251.9 171 81.3
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.3e-62 243.0 184 74.5
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.2e-59 234.6 175 75.4
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.4e-51 206.5 185 66.5
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.4e-49 200.3 302 45.0
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 3.0e-47 193.4 188 60.1
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 8.7e-47 191.8 184 60.3
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 5.6e-46 189.1 189 57.1
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 7.4e-46 188.7 151 71.5
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 7.4e-46 188.7 151 71.5
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 8.1e-45 185.3 209 54.5
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 1.1e-44 184.9 220 51.4
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 2.0e-43 180.6 188 56.4
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 7.6e-43 178.7 185 56.2
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 1.0e-42 178.3 189 54.5
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 1.3e-42 177.9 186 54.3
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 4.9e-42 176.0 181 55.8
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 1.1e-41 174.9 188 55.9
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 1.1e-41 174.9 188 56.4
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 3.2e-41 173.3 176 56.2
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 5.5e-41 172.6 180 55.0
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 5.5e-41 172.6 180 55.0
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 7.1e-41 172.2 176 56.2
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 7.1e-41 172.2 184 54.9
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 9.3e-41 171.8 182 57.1
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 1.2e-40 171.4 184 54.3
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 4.6e-40 169.5 177 56.5
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 6.0e-40 169.1 184 53.8
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 6.0e-40 169.1 172 56.4
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 1.0e-39 168.3 175 56.0
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 1.8e-39 167.5 181 54.7
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 1.8e-39 167.5 185 53.5
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 2.3e-39 167.2 187 53.5
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 5.1e-39 166.0 179 55.9
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 1.1e-38 164.9 184 52.7
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 1.5e-38 164.5 181 53.6
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 2.5e-38 163.7 189 52.4
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 3.3e-38 163.3 181 53.0
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 4.3e-38 162.9 169 57.4
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 4.3e-38 162.9 171 57.3
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 2.1e-37 160.6 188 50.5
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 8.2e-37 158.7 179 52.0
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 1.1e-36 158.3 178 51.7
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 1.1e-36 158.3 189 51.3
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 1.4e-36 157.9 176 52.3
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 1.4e-36 157.9 167 54.5
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 1.4e-36 157.9 172 52.9
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 4.1e-36 156.4 184 50.5
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 1.2e-35 154.8 179 52.0
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 4.5e-35 152.9 171 50.9
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 4.5e-35 152.9 170 52.4
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 5.8e-35 152.5 179 49.7
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 7.6e-35 152.1 199 47.7
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 1.0e-34 151.8 181 53.0
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 3.8e-34 149.8 180 47.8
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 3.8e-34 149.8 175 50.3
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 8.4e-34 148.7 163 52.8
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 1.1e-33 148.3 164 54.3
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 1.1e-33 148.3 173 50.9
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 1.4e-33 147.9 177 50.3
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.9e-33 147.5 181 49.2
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 2.5e-33 147.1 179 47.5
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 4.2e-33 146.4 169 50.3
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 2.1e-32 144.1 167 50.9
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 2.7e-32 143.7 174 53.4
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 3.5e-32 143.3 187 46.5
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 3.5e-32 143.3 109 67.9
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 4.6e-32 142.9 179 48.6
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 7.9e-32 142.1 183 46.4
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 2.3e-31 140.6 181 46.4
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 2.3e-31 140.6 170 47.6
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 3.0e-31 140.2 174 50.0
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 3.3e-30 136.7 170 47.1
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 4.3e-30 136.3 110 65.5
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 1.3e-29 134.8 106 67.0
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 2.8e-29 133.7 106 63.2
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 3.7e-29 133.3 173 48.0
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 8.2e-29 132.1 182 43.4
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 1.8e-28 131.0 178 47.2
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 3.1e-28 130.2 106 64.2
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 2.0e-27 127.5 107 63.6
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 5.9e-27 125.9 180 42.8
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 6.5e-26 122.5 100 63.0
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 7.2e-25 119.0 108 63.9
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 9.4e-25 118.6 146 48.6
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.6e-24 117.9 105 60.0
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 4.6e-24 116.3 167 43.7
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 2.3e-23 114.0 95 64.2
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 3.9e-23 113.2 110 54.5
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 1.1e-22 111.7 131 51.9
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 2.5e-22 110.5 100 58.0
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 1.3e-21 108.2 131 51.1
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 1.7e-21 107.8 108 58.3
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 1.1e-20 105.1 120 52.5
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 4.1e-20 103.2 104 56.7
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 6.9e-20 102.4 107 55.1
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 9.1e-20 102.1 108 56.5
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 1.2e-19 101.7 89 59.6
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 1.5e-19 101.3 105 52.4
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 4.5e-19 99.8 110 55.5
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 5.9e-19 99.4 109 54.1
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 7.7e-19 99.0 91 54.9
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 6.5e-18 95.9 116 52.6
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 2.5e-17 94.0 108 52.8
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 2.5e-17 94.0 107 51.4
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 2.5e-17 94.0 107 51.4
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 4.2e-17 93.2 90 55.6
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 3.6e-16 90.1 89 49.4
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 4.7e-16 89.7 89 56.2
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 1.0e-15 88.6 124 45.2
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 1.8e-15 87.8 88 55.7
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 3.9e-15 86.7 105 46.7
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 6.7e-15 85.9 88 54.5
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 2.0e-14 84.3 106 46.2
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 2.6e-14 84.0 207 32.9
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 4.1e-12 76.6 96 47.9
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 1.5e-11 74.7 107 43.0
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 2.6e-11 73.9 69 58.0
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 3.2e-09 67.0 40 85.0
Gohir.D03G069200 Gossypium hirsutum HOM05D000424 ORTHO05D000355 1.4e-07 61.6 171 25.7
CARHR163140 Cardamine hirsuta HOM05D001779 ORTHO05D001753 1.8e-07 61.2 124 31.5
THA.LOC104826684 Tarenaya hassleriana HOM05D001779 ORTHO05D001753 2.3e-07 60.8 124 32.3
AT3G53170 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 4.0e-07 60.1 124 31.5
AL5G34050 Arabidopsis lyrata HOM05D001779 ORTHO05D001753 5.2e-07 59.7 124 31.5
Carub.0005s1970 Capsella rubella HOM05D001779 ORTHO05D001753 6.7e-07 59.3 124 31.5
CsaV3_UNG230140 Cucumis sativus L. HOM05D001895 ORTHO05D009264 6.7e-07 59.3 187 25.1
Thhalv10011131m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 8.8e-07 58.9 124 31.5
ATR0180G025 Amborella trichopoda HOM05D042338 ORTHO05D031092 1.1e-06 58.5 42 59.5
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 1.1e-06 58.5 129 28.7
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 1.1e-06 58.5 169 29.6
Gohir.A11G054800 Gossypium hirsutum HOM05D007661 ORTHO05D009671 2.0e-06 57.8 176 26.7
CANSAT54G1800 Cannabis sativa HOM05D006008 ORTHO05D007334 2.6e-06 57.4 40 72.5
Aa31LG10G8340 Aethionema arabicum HOM05D001779 ORTHO05D001753 7.5e-06 55.8 121 30.6
CANSAT80G0235 Cannabis sativa HOM05D002460 ORTHO05D002716 9.7e-06 55.5 186 25.3


User provided reference genes

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