Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039033 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D111852 3.9e-63 244.6 119 100.0
CSS0032288 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D003892 9.7e-22 107.1 117 54.7
Lj2A1030G59 Lonicera japonica HOM05D000055 ORTHO05D003892 5.0e-18 94.7 117 48.7
SGA_v2.0_scaffold97G29216 Striga asiatica HOM05D000055 ORTHO05D003892 1.4e-17 93.2 117 48.7
Actinidia03736 Actinidia chinensis HOM05D000055 ORTHO05D003892 3.2e-17 92.0 117 48.7
Dinv32758 Davidia involucrata HOM05D000055 ORTHO05D003892 3.2e-17 92.0 117 48.7
Thecc.09G257000 Theobroma cacao HOM05D000055 ORTHO05D003892 5.5e-17 91.3 117 47.9
FAN25G0102 Fragaria x ananassa HOM05D000055 ORTHO05D003892 7.2e-17 90.9 85 61.2
QL01p022404 Quercus lobata HOM05D000055 ORTHO05D003892 9.4e-17 90.5 117 47.9
Haze_23862 Corylus avellana HOM05D000055 ORTHO05D003892 1.2e-16 90.1 84 59.5
Cfa011330 Carpinus fangiana HOM05D000055 ORTHO05D003892 1.6e-16 89.7 84 59.5
Lj1C190G12 Lonicera japonica HOM05D000055 ORTHO05D003892 1.6e-16 89.7 117 47.9
RcHm_v2.0_Chr5g0059631 Rosa chinensis HOM05D000055 ORTHO05D003892 2.1e-16 89.4 118 48.3
Duzib150G1261 Durio zibethinus HOM05D000055 ORTHO05D003892 2.7e-16 89.0 117 46.2
Psat5g277920 Pisum sativum HOM05D000055 ORTHO05D003892 2.7e-16 89.0 117 47.0
TWI31G1287 Tripterygium wilfordii HOM05D000055 ORTHO05D003892 2.7e-16 89.0 117 47.0
CiPaw.13G112000 Carya illinoinensis HOM05D000055 ORTHO05D003892 3.6e-16 88.6 117 47.9
CiPaw.14G079900 Carya illinoinensis HOM05D000055 ORTHO05D003892 3.6e-16 88.6 117 48.7
Duzib168G0484 Durio zibethinus HOM05D000055 ORTHO05D003892 4.6e-16 88.2 117 46.2
FvH4_3g32550 Fragaria vesca HOM05D000055 ORTHO05D003892 4.6e-16 88.2 118 48.3
FAN11G2098 Fragaria x ananassa HOM05D000055 ORTHO05D003892 4.6e-16 88.2 118 48.3
FAN21G3773 Fragaria x ananassa HOM05D000055 ORTHO05D003892 4.6e-16 88.2 118 48.3
Gohir.D08G018700 Gossypium hirsutum HOM05D000055 ORTHO05D003892 6.1e-16 87.8 117 45.3
Gorai.004G013200 Gossypium raimondii HOM05D000055 ORTHO05D003892 6.1e-16 87.8 117 45.3
Nn2g10768 Nelumbo nucifera HOM05D000055 ORTHO05D003892 6.1e-16 87.8 84 57.1
Nitab4.5_0000181g0050 Nicotiana tabacum HOM05D000055 ORTHO05D003892 6.1e-16 87.8 117 45.3
Medtr2g094090 Medicago truncatula HOM05D000055 ORTHO05D003892 7.9e-16 87.4 117 46.2
ECA248G2155 Erigeron canadensis HOM05D000055 ORTHO05D003892 1.0e-15 87.0 84 58.3
FAN16G0066 Fragaria x ananassa HOM05D000055 ORTHO05D003892 1.0e-15 87.0 118 47.5
vmacro14443 Vaccinium macrocarpon HOM05D000055 ORTHO05D003892 1.0e-15 87.0 117 47.0
Aqoxy1G01251 Aquilegia oxysepala HOM05D000055 ORTHO05D003892 1.4e-15 86.7 84 56.0
Gohir.A08G008700 Gossypium hirsutum HOM05D000055 ORTHO05D003892 1.4e-15 86.7 117 44.4
Peaxi162Scf00270g00098 Petunia axillaris HOM05D000055 ORTHO05D003892 1.4e-15 86.7 82 57.3
TPR.G11565 Trifolium pratense HOM05D000055 ORTHO05D003892 1.4e-15 86.7 117 46.2
unitig_747.g22000 Utricularia gibba HOM05D000055 ORTHO05D003892 1.4e-15 86.7 117 47.9
GSVIVG01025173001 Vitis vinifera HOM05D000055 ORTHO05D003892 1.4e-15 86.7 117 46.2
Gohir.A05G073900 Gossypium hirsutum HOM05D000055 ORTHO05D003892 1.8e-15 86.3 117 46.2
Gohir.D05G076800 Gossypium hirsutum HOM05D000055 ORTHO05D003892 1.8e-15 86.3 117 47.0
Gorai.009G078200 Gossypium raimondii HOM05D000055 ORTHO05D003892 1.8e-15 86.3 117 47.0
Nitab4.5_0000650g0130 Nicotiana tabacum HOM05D000055 ORTHO05D003892 1.8e-15 86.3 84 56.0
Nitab4.5_0011503g0020 Nicotiana tabacum HOM05D000055 ORTHO05D003892 1.8e-15 86.3 117 44.4
Cpa.g.sc216.16 Carica papaya HOM05D000055 ORTHO05D003892 2.3e-15 85.9 117 46.2
Prupe.6G100200 Prunus persica HOM05D000055 ORTHO05D003892 2.3e-15 85.9 117 46.2
TWI79G0113 Tripterygium wilfordii HOM05D000055 ORTHO05D003892 2.3e-15 85.9 117 45.3
Lj3g0023786 Lotus japonicus HOM05D000055 ORTHO05D003892 3.0e-15 85.5 117 47.0
MBI07_g19318_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D003892 3.9e-15 85.1 84 54.8
Phvul.005G135922 Phaseolus vulgaris HOM05D000055 ORTHO05D003892 3.9e-15 85.1 117 45.3
Potri.009G012900 Populus trichocarpa HOM05D000055 ORTHO05D003892 3.9e-15 85.1 82 57.3
Sabra09G0008400 Salix brachista HOM05D000055 ORTHO05D003892 3.9e-15 85.1 82 57.3
CANSAT54G2619 Cannabis sativa HOM05D000055 ORTHO05D003892 5.1e-15 84.7 84 57.1
Lj3g0014873 Lotus japonicus HOM05D000055 ORTHO05D003892 5.1e-15 84.7 117 44.4
MD11G1134400 Malus domestica HOM05D000055 ORTHO05D003892 5.1e-15 84.7 117 45.3
Manes.11G144200 Manihot esculenta HOM05D000055 ORTHO05D003892 5.1e-15 84.7 117 46.2
Cc01_g11240 Coffea canephora HOM05D000055 ORTHO05D003892 6.7e-15 84.3 117 47.0
Lsat_1_v5_gn_6_46181 Lactuca sativa HOM05D000055 ORTHO05D003892 6.7e-15 84.3 117 46.2
CARHR274210 Cardamine hirsuta HOM05D000055 ORTHO05D003892 8.8e-15 84.0 84 53.6
ECA233G4401 Erigeron canadensis HOM05D000055 ORTHO05D003892 8.8e-15 84.0 117 47.0
Gohir.D07G122200 Gossypium hirsutum HOM05D000055 ORTHO05D003892 8.8e-15 84.0 117 45.3
Gorai.001G132000 Gossypium raimondii HOM05D000055 ORTHO05D003892 8.8e-15 84.0 117 45.3
HanXRQChr02g0055721 Helianthus annuus HOM05D000055 ORTHO05D003892 1.1e-14 83.6 117 44.4
Hma1.2p1_1031F.1_g249950 Hydrangea macrophylla HOM05D000055 ORTHO05D003892 1.1e-14 83.6 117 45.3
VMungo1127G1522 Vigna mungo HOM05D000055 ORTHO05D003892 1.1e-14 83.6 115 47.0
Manes.04G022100 Manihot esculenta HOM05D000055 ORTHO05D003892 1.5e-14 83.2 117 45.3
Phvul.011G078300 Phaseolus vulgaris HOM05D000055 ORTHO05D003892 2.0e-14 82.8 115 47.0
Gohir.A07G117900 Gossypium hirsutum HOM05D000055 ORTHO05D003892 2.5e-14 82.4 117 44.4
TAR636G2561 Trochodendron aralioides HOM05D000055 ORTHO05D003892 2.5e-14 82.4 84 53.6
HPP92_012805 Vanilla planifolia HOM05D000055 ORTHO05D003892 2.5e-14 82.4 100 47.0
Glyma.11G147500 Glycine max HOM05D000055 ORTHO05D003892 3.3e-14 82.0 117 45.3
Glyma.12G173600 Glycine max HOM05D000055 ORTHO05D003892 3.3e-14 82.0 117 46.2
Glyma.13G326900 Glycine max HOM05D000055 ORTHO05D003892 3.3e-14 82.0 117 46.2
AL8G37140 Arabidopsis lyrata HOM05D000055 ORTHO05D003892 4.3e-14 81.6 84 53.6
AT5G60550 Arabidopsis thaliana HOM05D000055 ORTHO05D003892 4.3e-14 81.6 84 53.6
Carub.0008s2124 Capsella rubella HOM05D000055 ORTHO05D003892 4.3e-14 81.6 84 53.6
ClCG02G021100 Citrullus lanatus HOM05D000055 ORTHO05D003892 4.3e-14 81.6 117 46.2
Thhalv10013666m.g Eutrema salsugineum HOM05D000055 ORTHO05D003892 4.3e-14 81.6 84 53.6
Oeu002458.1 Olea europaea HOM05D000055 ORTHO05D003892 4.3e-14 81.6 117 44.4
Sp6g22120 Schrenkiella parvula HOM05D000055 ORTHO05D003892 4.3e-14 81.6 84 53.6
BcaB08g36351 Brassica carinata HOM05D000055 ORTHO05D003892 5.7e-14 81.3 84 52.4
BcaC03g13960 Brassica carinata HOM05D000055 ORTHO05D003892 5.7e-14 81.3 84 52.4
BcaC04g19713 Brassica carinata HOM05D000055 ORTHO05D003892 5.7e-14 81.3 84 52.4
A10p17740 Brassica napus HOM05D000055 ORTHO05D003892 5.7e-14 81.3 84 52.4
C09p53200 Brassica napus HOM05D000055 ORTHO05D003892 5.7e-14 81.3 84 52.4
BolC2t07246H Brassica oleracea HOM05D000055 ORTHO05D003892 5.7e-14 81.3 84 52.4
BolC9t58195H Brassica oleracea HOM05D000055 ORTHO05D003892 5.7e-14 81.3 84 52.4
BraA10t43852Z Brassica rapa HOM05D000055 ORTHO05D003892 5.7e-14 81.3 84 52.4
Glyma.12G068500 Glycine max HOM05D000055 ORTHO05D003892 5.7e-14 81.3 84 54.8
Psat7g224720 Pisum sativum HOM05D000055 ORTHO05D003892 5.7e-14 81.3 117 43.6
Lalb_Chr22g0350221 Lupinus albus HOM05D000055 ORTHO05D003892 7.4e-14 80.9 84 53.6
TAR623G1161 Trochodendron aralioides HOM05D000055 ORTHO05D003892 7.4e-14 80.9 84 56.0
BcaB05g22653 Brassica carinata HOM05D000055 ORTHO05D003892 9.7e-14 80.5 84 51.2
C02p11590 Brassica napus HOM05D000055 ORTHO05D003892 9.7e-14 80.5 84 51.2
BraA02t05716Z Brassica rapa HOM05D000055 ORTHO05D003892 9.7e-14 80.5 84 51.2
Lsat_1_v5_gn_1_65461 Lactuca sativa HOM05D000055 ORTHO05D003892 1.7e-13 79.7 117 43.6
vmacro03192 Vaccinium macrocarpon HOM05D000055 ORTHO05D003892 1.7e-13 79.7 122 43.4
CDE07G1595 Ceratophyllum demersum HOM05D000055 ORTHO05D003892 2.2e-13 79.3 83 54.2
SalBow3G2078 Salvia bowleyana HOM05D000055 ORTHO05D003892 2.2e-13 79.3 115 43.5
TPR.G15553 Trifolium pratense HOM05D000055 ORTHO05D003892 2.2e-13 79.3 117 42.7
Lalb_Chr01g0004251 Lupinus albus HOM05D000055 ORTHO05D003892 2.8e-13 79.0 117 43.6
SalBow3G0288 Salvia bowleyana HOM05D000055 ORTHO05D003892 2.8e-13 79.0 112 42.9
PGSC0003DMG400008108 Solanum tuberosum HOM05D000055 ORTHO05D003892 2.8e-13 79.0 84 52.4
VMungo1080G1375 Vigna mungo HOM05D000055 ORTHO05D003892 2.8e-13 79.0 117 45.3
CAN.G631.17 Capsicum annuum HOM05D000055 ORTHO05D003892 3.7e-13 78.6 84 53.6
Actinidia07130 Actinidia chinensis HOM05D000055 ORTHO05D003892 4.8e-13 78.2 117 45.3
arahy.Tifrunner.gnm1.ann1.E1CD9Y Arachis hypogaea HOM05D000055 ORTHO05D003892 4.8e-13 78.2 82 52.4
arahy.Tifrunner.gnm1.ann1.E5GBGH Arachis hypogaea HOM05D000055 ORTHO05D003892 4.8e-13 78.2 82 52.4
MSTRG.21130 Avicennia marina HOM05D000055 ORTHO05D003892 4.8e-13 78.2 117 43.6
HanXRQChr01g0018391 Helianthus annuus HOM05D000055 ORTHO05D003892 4.8e-13 78.2 117 42.7
Aa31LG1G12540 Aethionema arabicum HOM05D000055 ORTHO05D003892 6.3e-13 77.8 84 52.4
ATR0115G016 Amborella trichopoda HOM05D000055 ORTHO05D003892 6.3e-13 77.8 117 41.9
MSTRG.17813 Avicennia marina HOM05D000055 ORTHO05D003892 8.2e-13 77.4 117 42.7
Thhalv10002549m.g Eutrema salsugineum HOM05D000055 ORTHO05D003892 8.2e-13 77.4 84 50.0
Ah.08g216770 Amaranthus hybridus HOM05D000055 ORTHO05D003892 1.1e-12 77.0 117 44.4
Sed0006682 Sechium edule HOM05D000614 ORTHO05D003892 1.1e-12 77.0 117 44.4
HPP92_005398 Vanilla planifolia HOM05D000055 ORTHO05D003892 1.1e-12 77.0 84 51.2
Eucgr.B02491 Eucalyptus grandis HOM05D000055 ORTHO05D003892 1.4e-12 76.6 117 44.4
THA.LOC104810850 Tarenaya hassleriana HOM05D000055 ORTHO05D003892 1.4e-12 76.6 84 50.0
EL10Ac7g16406 Beta vulgaris HOM05D000055 ORTHO05D003892 1.8e-12 76.3 117 44.4
AUR62001489 Chenopodium quinoa HOM05D000055 ORTHO05D003892 1.8e-12 76.3 117 44.4
Ciclev10028546m.g Citrus clementina HOM05D000055 ORTHO05D003892 1.8e-12 76.3 117 41.9
Lalb_Chr19g0137341 Lupinus albus HOM05D000055 ORTHO05D003892 1.8e-12 76.3 117 43.6
CsaV3_6G013850 Cucumis sativus L. HOM05D000055 ORTHO05D003892 2.4e-12 75.9 117 42.7
Sabra04G0142300 Salix brachista HOM05D000055 ORTHO05D003892 2.4e-12 75.9 82 52.4
SEGI_17972 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 2.4e-12 75.9 117 40.2
AUR62009881 Chenopodium quinoa HOM05D000055 ORTHO05D003892 3.1e-12 75.5 84 52.4
Hund05740 Selenicereus undatus HOM05D000055 ORTHO05D003892 3.1e-12 75.5 117 43.6
Sopen11g028030 Solanum pennellii HOM05D000055 ORTHO05D003892 3.1e-12 75.5 84 52.4
CARHR150700 Cardamine hirsuta HOM05D000055 ORTHO05D003892 4.1e-12 75.1 84 48.8
Medtr4g059560 Medicago truncatula HOM05D000055 ORTHO05D003892 5.3e-12 74.7 117 43.6
Sp5g16060 Schrenkiella parvula HOM05D000055 ORTHO05D003892 5.3e-12 74.7 84 48.8
Atru.chr3.3642 Acer truncatum HOM05D000055 ORTHO05D003892 6.9e-12 74.3 117 42.7
PGR102G0854 Punica granatum HOM05D000055 ORTHO05D003892 6.9e-12 74.3 117 43.6
Ah.15g094100 Amaranthus hybridus HOM05D000055 ORTHO05D003892 9.1e-12 73.9 116 43.1
Migut.O00632 Erythranthe guttata HOM05D000055 ORTHO05D003892 9.1e-12 73.9 117 44.4
PSO063G7525 Papaver somniferum HOM05D000055 ORTHO05D003892 9.1e-12 73.9 84 47.6
Rhsim13G0093800 Rhododendron simsii HOM05D000055 ORTHO05D003892 9.1e-12 73.9 117 42.7
SEGI_01883 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 9.1e-12 73.9 83 51.8
THA.LOC104799499 Tarenaya hassleriana HOM05D000055 ORTHO05D003892 9.1e-12 73.9 117 40.2
MELO3C025767.2 Cucumis melo HOM05D000055 ORTHO05D003892 1.2e-11 73.6 117 41.9
PSO339G3375 Papaver somniferum HOM05D000055 ORTHO05D003892 1.2e-11 73.6 117 41.9
PSO384G4136 Papaver somniferum HOM05D000055 ORTHO05D003892 1.2e-11 73.6 117 41.9
AL5G23810 Arabidopsis lyrata HOM05D000055 ORTHO05D003892 1.5e-11 73.2 84 48.8
AT3G45240 Arabidopsis thaliana HOM05D000055 ORTHO05D003892 1.5e-11 73.2 84 48.8
Sc06g0006930 Simmondsia chinensis HOM05D000055 ORTHO05D003892 1.5e-11 73.2 117 42.7
Rhsim01G0217700 Rhododendron simsii HOM05D000055 ORTHO05D003892 2.0e-11 72.8 167 35.3
DCAR_006057 Daucus carota HOM05D000055 ORTHO05D003892 4.5e-11 71.6 117 41.9
PSO339G0350 Papaver somniferum HOM05D000055 ORTHO05D003892 4.5e-11 71.6 84 46.4
Carub.0005s1102 Capsella rubella HOM05D000055 ORTHO05D003892 5.9e-11 71.2 82 48.8
Mapoly0069s0064 Marchantia polymorpha HOM05D000055 ORTHO05D003892 5.9e-11 71.2 118 40.7
Aa31LG4G14560 Aethionema arabicum HOM05D000055 ORTHO05D003892 1.7e-10 69.7 84 47.6
TAR633G0710 Trochodendron aralioides HOM05D000055 ORTHO05D003892 1.7e-10 69.7 117 41.9
MBI19_g17414_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D003892 3.8e-10 68.6 84 45.2
Pp3c22_18850 Physcomitrium patens HOM05D000055 ORTHO05D003892 3.8e-10 68.6 123 38.2
Pp3c1_23490 Physcomitrium patens HOM05D000055 ORTHO05D003892 3.2e-09 65.5 117 37.6
Os03g0711300 Oryza sativa ssp. japonica HOM05D000055 ORTHO05D003892 4.2e-09 65.1 117 40.2
DCAR_015541 Daucus carota HOM05D000055 ORTHO05D003892 5.5e-09 64.7 80 50.0
Zm00001eb427480 Zea mays HOM05D000055 ORTHO05D003892 7.2e-09 64.3 84 42.9
Zm00001eb075500 Zea mays HOM05D000055 ORTHO05D003892 2.7e-08 62.4 84 47.6
Duzib114G0286 Durio zibethinus HOM05D000055 ORTHO05D003892 3.6e-08 62.0 84 44.0
Pp3c2_14270 Physcomitrium patens HOM05D000055 ORTHO05D003892 7.9e-08 60.8 117 36.8
SMO275G0017 Selaginella moellendorffii HOM05D000055 ORTHO05D003892 1.0e-07 60.5 88 39.8
Duzib106G1552 Durio zibethinus HOM05D000055 ORTHO05D003892 1.4e-07 60.1 84 45.2
SEGI_03957 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 1.8e-07 59.7 122 39.3
Thecc.10G171700 Theobroma cacao HOM05D000055 ORTHO05D003892 3.0e-07 58.9 84 45.2
Nitab4.5_0003701g0050 Nicotiana tabacum HOM05D000055 ORTHO05D003892 3.9e-07 58.5 32 78.1
TAR633G1761 Trochodendron aralioides HOM05D000055 ORTHO05D003892 1.5e-06 56.6 81 44.4
GSVIVG01025378001 Vitis vinifera HOM05D000055 ORTHO05D003892 3.3e-06 55.5 84 40.5
Pp3c10_8000 Physcomitrium patens HOM05D000055 ORTHO05D003892 5.7e-06 54.7 86 41.9
MD03G1116200 Malus domestica HOM05D000055 ORTHO05D003892 9.7e-06 53.9 36 69.4


User provided reference genes

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