Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039023 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 8.0e-231 803.5 437 100.0
CSS0014816 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 3.3e-229 798.1 440 99.3
CSS0019085 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 3.1e-190 668.7 435 82.5
Actinidia25244 Actinidia chinensis HOM05D006920 ORTHO05D005895 1.8e-86 323.9 445 48.3
vmacro17256 Vaccinium macrocarpon HOM05D006920 ORTHO05D005895 5.6e-75 285.8 461 44.5
Rhsim05G0018400 Rhododendron simsii HOM05D006920 ORTHO05D005895 5.8e-72 275.8 421 46.1
Hma1.2p1_0169F.1_g074930 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 2.1e-50 204.1 443 37.2
Dinv42334 Davidia involucrata HOM05D006920 ORTHO05D005895 4.6e-45 186.4 309 43.4
TAR383G0297 Trochodendron aralioides HOM05D006920 ORTHO05D005895 4.5e-40 169.9 457 31.9
Hma1.2p1_0476F.1_g160830 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 3.1e-33 147.1 301 39.5
Dinv36779 Davidia involucrata HOM05D006920 ORTHO05D005895 9.0e-25 119.0 242 36.8
Atru.chr7.1617 Acer truncatum HOM05D006920 ORTHO05D005895 1.2e-21 108.6 462 29.0
Haze_25928 Corylus avellana HOM05D006920 ORTHO05D005895 1.6e-21 108.2 478 28.5
Cfa003067 Carpinus fangiana HOM05D006920 ORTHO05D005895 5.1e-20 103.2 531 26.6
Ciclev10007413m.g Citrus clementina HOM05D006920 ORTHO05D005895 1.9e-19 101.3 450 26.9
Potri.006G148400 Populus trichocarpa HOM05D006920 ORTHO05D005895 7.4e-19 99.4 371 27.8
Prupe.7G207100 Prunus persica HOM05D006920 ORTHO05D005895 9.7e-19 99.0 488 26.6
CiPaw.03G213600 Carya illinoinensis HOM05D006920 ORTHO05D005895 2.8e-18 97.4 574 25.4
Cc06_g11560 Coffea canephora HOM05D006920 ORTHO05D005895 3.1e-17 94.0 436 28.9
COL.COLO4_18185 Corchorus olitorius HOM05D006920 ORTHO05D005895 3.1e-17 94.0 421 27.3
MSTRG.19500 Avicennia marina HOM05D006920 ORTHO05D005895 1.5e-16 91.7 456 25.7
CANSAT56G3092 Cannabis sativa HOM05D006920 ORTHO05D005895 5.9e-16 89.7 484 27.1
QL02p062309 Quercus lobata HOM05D006920 ORTHO05D005895 1.7e-15 88.2 565 25.0
TWI63G0676 Tripterygium wilfordii HOM05D006920 ORTHO05D005895 1.1e-14 85.5 395 27.6
Sabra06G0117400 Salix brachista HOM05D006920 ORTHO05D005895 7.2e-14 82.8 269 32.0
Duzib150G1610 Durio zibethinus HOM05D006920 ORTHO05D005895 9.4e-14 82.4 379 28.2
Thecc.09G086800 Theobroma cacao HOM05D006920 ORTHO05D005895 9.4e-14 82.4 375 25.9
Cpa.g.sc28.161 Carica papaya HOM05D006920 ORTHO05D005895 2.1e-13 81.3 227 32.6
GSVIVG01015184001 Vitis vinifera HOM05D006920 ORTHO05D005895 1.4e-12 78.6 189 37.0
Oeu064585.1 Olea europaea HOM05D006920 ORTHO05D005895 8.8e-12 75.9 110 42.7
Nitab4.5_0008077g0010 Nicotiana tabacum HOM05D006920 ORTHO05D005895 9.7e-11 72.4 449 25.6
Dinv42333 Davidia involucrata HOM05D006920 ORTHO05D005895 6.3e-10 69.7 57 61.4
MD15G1209300 Malus domestica HOM05D006920 ORTHO05D005895 6.3e-10 69.7 183 35.5
Nitab4.5_0005104g0050 Nicotiana tabacum HOM05D006920 ORTHO05D005895 1.1e-09 68.9 420 25.5
Migut.J00581 Erythranthe guttata HOM05D006920 ORTHO05D005895 6.9e-09 66.2 311 25.7
Manes.01G178200 Manihot esculenta HOM05D006920 ORTHO05D005895 1.5e-08 65.1 231 29.4
PGSC0003DMG400014565 Solanum tuberosum HOM05D006920 ORTHO05D005895 2.0e-08 64.7 444 24.3
Gorai.009G032200 Gossypium raimondii HOM05D006920 ORTHO05D005895 3.4e-08 63.9 390 24.4
RcHm_v2.0_Chr3g0459471 Rosa chinensis HOM05D006920 ORTHO05D005895 4.5e-08 63.5 510 22.9
Hma1.2p1_1540F.1_g289660 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 1.7e-07 61.6 88 50.0
RcHm_v2.0_Chr2g0093651 Rosa chinensis HOM05D006920 ORTHO05D005895 1.7e-07 61.6 495 23.8
SGA_v2.0_scaffold4G02308 Striga asiatica HOM05D006920 ORTHO05D005895 2.9e-07 60.8 360 25.0
Nn6g35509 Nelumbo nucifera HOM05D006920 ORTHO05D005895 3.8e-07 60.5 321 24.6
arahy.Tifrunner.gnm1.ann1.50MPSE Arachis hypogaea HOM05D006920 ORTHO05D005895 1.1e-06 58.9 323 27.2
Sopen05g005130 Solanum pennellii HOM05D006920 ORTHO05D005895 1.9e-06 58.2 442 24.2
FAN26G1238 Fragaria x ananassa HOM05D006920 ORTHO05D005895 3.2e-06 57.4 474 23.6
FAN23G0431 Fragaria x ananassa HOM05D006920 ORTHO05D005895 4.2e-06 57.0 472 23.5
Gohir.D05G032000 Gossypium hirsutum HOM05D006920 ORTHO05D005895 7.2e-06 56.2 326 23.6


User provided reference genes

Program Settings