Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039007 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.4e-53 212.6 104 100.0
CSS0011416 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.3e-35 152.9 77 96.1
CSS0037675 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.6e-33 146.0 100 78.0
Thecc.10G028200 Theobroma cacao HOM05D004100 ORTHO05D004781 3.4e-31 138.3 80 81.2
Lalb_Chr15g0084391 Lupinus albus HOM05D004100 ORTHO05D004781 7.6e-31 137.1 77 84.4
Lalb_Chr18g0052831 Lupinus albus HOM05D004100 ORTHO05D004781 7.6e-31 137.1 77 84.4
Glyma.18G031200 Glycine max HOM05D004100 ORTHO05D004781 1.0e-30 136.7 77 85.7
GSVIVG01016389001 Vitis vinifera HOM05D004100 ORTHO05D004781 1.7e-30 136.0 80 81.2
Glyma.11G226100 Glycine max HOM05D004100 ORTHO05D004781 2.2e-30 135.6 77 84.4
Phvul.001G239400 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 2.2e-30 135.6 77 85.7
CiPaw.01G294400 Carya illinoinensis HOM05D004100 ORTHO05D004781 3.8e-30 134.8 77 85.7
arahy.Tifrunner.gnm1.ann1.YUBK9J Arachis hypogaea HOM05D004100 ORTHO05D004781 4.9e-30 134.4 77 85.7
Gohir.A05G346300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 4.9e-30 134.4 77 84.4
Gohir.D13G018200 Gossypium hirsutum HOM05D004100 ORTHO05D004781 8.4e-30 133.7 80 77.5
Sed0020785 Sechium edule HOM05D004100 ORTHO05D004781 8.4e-30 133.7 77 84.4
Gohir.D04G065900 Gossypium hirsutum HOM05D004100 ORTHO05D004781 2.5e-29 132.1 77 81.8
Gorai.012G074300 Gossypium raimondii HOM05D004100 ORTHO05D004781 2.5e-29 132.1 77 81.8
Duzib114G0906 Durio zibethinus HOM05D004100 ORTHO05D004781 3.2e-29 131.7 77 80.5
Gorai.013G020200 Gossypium raimondii HOM05D004100 ORTHO05D004781 5.5e-29 131.0 80 76.2
RcHm_v2.0_Chr1g0369131 Rosa chinensis HOM05D004100 ORTHO05D004781 5.5e-29 131.0 77 79.2
Ca_05921_v3 Cicer arietinum L. HOM05D004100 ORTHO05D004781 1.2e-28 129.8 77 81.8
Phvul.008G227500 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.2e-28 129.8 77 80.5
Sed0001470 Sechium edule HOM05D004100 ORTHO05D004781 1.2e-28 129.8 77 83.1
Ciclev10010082m.g Citrus clementina HOM05D004100 ORTHO05D004781 2.1e-28 129.0 77 79.2
COL.COLO4_25607 Corchorus olitorius HOM05D004100 ORTHO05D004781 2.7e-28 128.6 78 80.8
CiPaw.02G189000 Carya illinoinensis HOM05D004100 ORTHO05D004781 3.5e-28 128.3 77 83.1
Gohir.A13G017100 Gossypium hirsutum HOM05D004100 ORTHO05D004781 3.5e-28 128.3 78 75.6
Potri.010G194400 Populus trichocarpa HOM05D004100 ORTHO05D004781 3.5e-28 128.3 77 79.2
Potri.008G063000 Populus trichocarpa HOM05D004100 ORTHO05D004781 4.6e-28 127.9 77 77.9
TWI63G1110 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 4.6e-28 127.9 77 79.2
Duzib128G1203 Durio zibethinus HOM05D004100 ORTHO05D004781 1.0e-27 126.7 77 79.2
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 1.0e-27 126.7 77 77.9
FvH4_7g23790 Fragaria vesca HOM05D004100 ORTHO05D004781 1.0e-27 126.7 77 77.9
Glyma.02G253300 Glycine max HOM05D004100 ORTHO05D004781 1.3e-27 126.3 77 80.5
Manes.10G019000 Manihot esculenta HOM05D004100 ORTHO05D004781 1.3e-27 126.3 77 76.6
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 1.3e-27 126.3 78 79.5
Glyma.14G063100 Glycine max HOM05D004100 ORTHO05D004781 2.3e-27 125.6 77 79.2
Lalb_Chr04g0250821 Lupinus albus HOM05D004100 ORTHO05D004781 2.3e-27 125.6 77 75.3
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 3.0e-27 125.2 77 79.2
Migut.F01567 Erythranthe guttata HOM05D004100 ORTHO05D004781 3.9e-27 124.8 78 78.2
Manes.07G124300 Manihot esculenta HOM05D004100 ORTHO05D004781 3.9e-27 124.8 77 77.9
PSO384G2084 Papaver somniferum HOM05D004100 ORTHO05D004781 3.9e-27 124.8 77 77.9
PSO585G0025 Papaver somniferum HOM05D004100 ORTHO05D004781 3.9e-27 124.8 77 77.9
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 3.9e-27 124.8 77 77.9
SalBow1G1269 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.1e-26 123.2 77 77.9
Prupe.2G244600 Prunus persica HOM05D004100 ORTHO05D004781 1.5e-26 122.9 77 75.3
Sed0017691 Sechium edule HOM05D004100 ORTHO05D004781 1.5e-26 122.9 77 80.5
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 2.5e-26 122.1 77 76.6
DCAR_027562 Daucus carota HOM05D004100 ORTHO05D004781 3.3e-26 121.7 77 76.6
Sabra10G0149500 Salix brachista HOM05D004100 ORTHO05D004781 3.3e-26 121.7 77 75.3
MSTRG.234 Avicennia marina HOM05D004100 ORTHO05D004781 5.7e-26 120.9 77 75.3
ClCG11G006500 Citrullus lanatus HOM05D004100 ORTHO05D004781 5.7e-26 120.9 73 82.2
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 5.7e-26 120.9 77 76.6
Solyc08g082695.1 Solanum lycopersicum HOM05D004100 ORTHO05D004781 9.6e-26 120.2 79 73.4
Sopen08g030920 Solanum pennellii HOM05D004100 ORTHO05D004781 9.6e-26 120.2 79 73.4
arahy.Tifrunner.gnm1.ann1.0J6FIX Arachis hypogaea HOM05D004100 ORTHO05D004781 1.3e-25 119.8 79 73.4
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 1.3e-25 119.8 79 73.4
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 1.6e-25 119.4 77 72.7
PGR044G2436 Punica granatum HOM05D004100 ORTHO05D004781 1.6e-25 119.4 77 74.0
Eucgr.G03237 Eucalyptus grandis HOM05D004100 ORTHO05D004781 2.1e-25 119.0 79 73.4
Hma1.2p1_0026F.1_g016860 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 2.8e-25 118.6 77 71.4
SalBow6G6247 Salvia bowleyana HOM05D004100 ORTHO05D004781 2.8e-25 118.6 74 77.0
TAR369G1064 Trochodendron aralioides HOM05D004100 ORTHO05D004781 2.8e-25 118.6 77 75.3
CDE05G3529 Ceratophyllum demersum HOM05D004100 ORTHO05D004781 3.7e-25 118.2 77 74.0
unitig_0.g234 Utricularia gibba HOM05D004100 ORTHO05D004781 3.7e-25 118.2 77 72.7
Lj6g0000528 Lotus japonicus HOM05D004100 ORTHO05D004781 6.2e-25 117.5 77 71.4
Migut.I01038 Erythranthe guttata HOM05D004100 ORTHO05D004781 8.2e-25 117.1 77 71.4
Nn2g11332 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.1e-24 116.7 77 75.3
CAN.G567.29 Capsicum annuum HOM05D004100 ORTHO05D004781 1.4e-24 116.3 77 72.7
Nn2g13575 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.4e-24 116.3 78 73.1
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.4e-24 116.3 75 74.7
Oeu055822.1 Olea europaea HOM05D004100 ORTHO05D004781 1.4e-24 116.3 77 72.7
Os09g0326850 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 1.4e-24 116.3 78 73.1
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 3.1e-24 115.2 84 65.5
HanXRQChr07g0202251 Helianthus annuus HOM05D004100 ORTHO05D004781 3.1e-24 115.2 77 70.1
Cc02_g07040 Coffea canephora HOM05D004100 ORTHO05D004781 4.1e-24 114.8 77 71.4
Ah.10g030410 Amaranthus hybridus HOM05D004100 ORTHO05D004781 9.0e-24 113.6 77 68.8
CSS0048931 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 9.0e-24 113.6 80 66.2
Aqoxy2G00841 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 1.2e-23 113.2 77 70.1
Actinidia07713 Actinidia chinensis HOM05D004100 ORTHO05D004781 2.6e-23 112.1 77 70.1
Actinidia13907 Actinidia chinensis HOM05D004100 ORTHO05D004781 2.6e-23 112.1 77 70.1
Lsat_1_v5_gn_1_35860 Lactuca sativa HOM05D004100 ORTHO05D004781 2.6e-23 112.1 75 69.3
ECA238G3287 Erigeron canadensis HOM05D004100 ORTHO05D004781 4.5e-23 111.3 77 68.8
Aqoxy6G01946 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 1.0e-22 110.2 77 68.8
vmacro10075 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 1.7e-22 109.4 77 71.4
Rhsim03G0139100 Rhododendron simsii HOM05D004100 ORTHO05D004781 2.2e-22 109.0 80 66.2
Rhsim09G0171200 Rhododendron simsii HOM05D004100 ORTHO05D004781 2.2e-22 109.0 77 70.1
CAN.G689.7 Capsicum annuum HOM05D004100 ORTHO05D004781 3.8e-22 108.2 77 64.9
vmacro16617 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 3.8e-22 108.2 77 70.1
TAR623G1136 Trochodendron aralioides HOM05D004100 ORTHO05D004781 1.1e-21 106.7 77 67.5
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.9e-21 105.9 77 67.5
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 2.5e-21 105.5 79 64.6
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 3.2e-21 105.1 78 65.4
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 5.5e-21 104.4 77 62.3
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 9.3e-21 103.6 77 62.3
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 1.2e-20 103.2 77 61.0
Os03g0331900 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 1.2e-20 103.2 78 64.1
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 1.6e-20 102.8 77 64.9
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 1.6e-20 102.8 77 62.3
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 2.1e-20 102.4 77 61.0
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 3.5e-20 101.7 77 62.3
MD04G1144200 Malus domestica HOM05D004100 ORTHO05D004781 3.5e-20 101.7 80 56.2
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 3.5e-20 101.7 77 61.0
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 4.6e-20 101.3 77 61.0
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 4.6e-20 101.3 77 59.7
Prupe.6G268700 Prunus persica HOM05D004100 ORTHO05D004781 7.9e-20 100.5 77 62.3
MD12G1158300 Malus domestica HOM05D004100 ORTHO05D004781 1.0e-19 100.1 77 57.1
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 1.3e-19 99.8 78 62.8
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 1.3e-19 99.8 77 63.6
CiPaw.10G153500 Carya illinoinensis HOM05D004100 ORTHO05D004781 1.8e-19 99.4 77 61.0
PGR031G0718 Punica granatum HOM05D004100 ORTHO05D004781 1.8e-19 99.4 80 60.0
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 1.8e-19 99.4 77 61.0
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 3.0e-19 98.6 75 62.7
CiPaw.09G204500 Carya illinoinensis HOM05D004100 ORTHO05D004781 5.1e-19 97.8 77 59.7
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 5.1e-19 97.8 77 59.7
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 8.7e-19 97.1 80 56.2
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 8.7e-19 97.1 80 56.2
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.1e-18 96.7 72 62.5
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 1.1e-18 96.7 77 59.7
FvH4_6g12280 Fragaria vesca HOM05D004100 ORTHO05D004781 1.5e-18 96.3 77 61.0
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 1.9e-18 95.9 78 57.7
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 1.9e-18 95.9 78 59.0
FAN09G3480 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.9e-18 95.9 77 61.0
Sabra16G0106200 Salix brachista HOM05D004100 ORTHO05D004781 1.9e-18 95.9 77 57.1
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 1.9e-18 95.9 78 57.7
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 2.5e-18 95.5 78 57.7
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 2.5e-18 95.5 78 57.7
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 2.5e-18 95.5 78 57.7
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 3.3e-18 95.1 78 59.0
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 3.3e-18 95.1 78 59.0
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 4.3e-18 94.7 78 57.7
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 4.3e-18 94.7 78 57.7
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 4.3e-18 94.7 78 57.7
HPP92_003287 Vanilla planifolia HOM05D004100 ORTHO05D004781 4.3e-18 94.7 63 74.6
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 5.7e-18 94.4 78 57.7
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 5.7e-18 94.4 78 57.7
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 5.7e-18 94.4 78 57.7
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 7.4e-18 94.0 78 57.7
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 7.4e-18 94.0 78 57.7
Cfa017271 Carpinus fangiana HOM05D004100 ORTHO05D004781 9.7e-18 93.6 77 57.1
Mapoly0015s0116 Marchantia polymorpha HOM05D004100 ORTHO05D004781 9.7e-18 93.6 77 54.5
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 1.6e-17 92.8 77 58.4
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 1.6e-17 92.8 77 57.1
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 2.2e-17 92.4 78 57.7
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 2.8e-17 92.0 78 56.4
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 4.8e-17 91.3 78 56.4
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 4.8e-17 91.3 78 56.4
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 4.8e-17 91.3 80 53.8
QL07p036366 Quercus lobata HOM05D004100 ORTHO05D004781 6.3e-17 90.9 77 57.1
C08p29320 Brassica napus HOM05D004100 ORTHO05D004781 1.1e-16 90.1 78 55.1
Psat7g242160 Pisum sativum HOM05D004100 ORTHO05D004781 1.1e-16 90.1 81 54.3
FAN01G2433 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.8e-16 89.4 56 75.0
Prupe.6G268600 Prunus persica HOM05D004100 ORTHO05D004781 1.8e-16 89.4 76 55.3
arahy.Tifrunner.gnm1.ann1.R21D2Y Arachis hypogaea HOM05D004100 ORTHO05D004781 3.1e-16 88.6 53 75.5
FAN03G0295 Fragaria x ananassa HOM05D004100 ORTHO05D004781 3.1e-16 88.6 52 78.8
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 5.3e-16 87.8 53 77.4
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 5.3e-16 87.8 58 72.4
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 1.5e-15 86.3 77 55.8
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 2.0e-15 85.9 77 55.8
MELO3C009201.2 Cucumis melo HOM05D004100 ORTHO05D004781 3.4e-15 85.1 77 51.9
Pp3c6_2550 Physcomitrium patens HOM05D004100 ORTHO05D004781 3.4e-15 85.1 77 53.2
Pp3c5_27310 Physcomitrium patens HOM05D004100 ORTHO05D004781 4.5e-15 84.7 77 51.9
BcaNung06516 Brassica carinata HOM05D004100 ORTHO05D004781 5.0e-14 81.3 77 53.2
SMO117G0142 Selaginella moellendorffii HOM05D004100 ORTHO05D004781 6.5e-14 80.9 74 52.7
AUR62013833 Chenopodium quinoa HOM05D004100 ORTHO05D004781 1.1e-13 80.1 71 59.2
Sed0010532 Sechium edule HOM05D004100 ORTHO05D004781 9.4e-13 77.0 77 49.4
Atru.chr8.2168 Acer truncatum HOM05D004100 ORTHO05D004781 1.8e-11 72.8 61 54.1
FAN06G1577 Fragaria x ananassa HOM05D004100 ORTHO05D004781 8.8e-11 70.5 41 80.5
LjContig00141g0009471 Lotus japonicus HOM05D004100 ORTHO05D004781 1.1e-10 70.1 51 58.8
Actinidia27826 Actinidia chinensis HOM05D004100 ORTHO05D004781 5.7e-10 67.8 38 84.2
FAN06G2089 Fragaria x ananassa HOM05D004100 ORTHO05D004781 5.7e-10 67.8 40 80.0
MCO12G437 Micromonas commoda HOM05D004100 ORTHO05D004781 6.3e-09 64.3 79 46.8
AUR62037182 Chenopodium quinoa HOM05D004100 ORTHO05D004781 9.1e-08 60.5 72 47.2
BcaC02g11939 Brassica carinata HOM05D004100 ORTHO05D004781 2.0e-07 59.3 45 62.2
Cre06.g299750 Chlamydomonas reinhardtii HOM05D004100 ORTHO05D004781 7.7e-07 57.4 77 41.6
PRCOL_00003613 Prasinoderma coloniale HOM05D004100 ORTHO05D004781 2.9e-06 55.5 79 40.5


User provided reference genes

Program Settings