Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 6.6e-100 368.2 340 100.0
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 4.4e-59 232.6 344 73.8
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 5.7e-59 232.3 336 82.4
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.3e-58 231.1 340 83.2
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.7e-58 230.7 340 83.2
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.7e-55 220.7 347 78.1
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 2.5e-54 216.9 330 81.5
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 2.5e-54 216.9 334 81.4
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 3.2e-54 216.5 340 80.6
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 4.2e-54 216.1 336 80.7
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 1.2e-53 214.5 339 81.1
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 1.2e-53 214.5 331 77.9
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 2.7e-53 213.4 341 80.1
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 4.7e-53 212.6 335 81.2
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 4.7e-53 212.6 338 80.2
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 4.7e-53 212.6 340 80.6
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 6.1e-53 212.2 338 79.9
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 6.1e-53 212.2 331 81.0
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 6.1e-53 212.2 333 80.2
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 1.4e-52 211.1 333 80.8
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 1.4e-52 211.1 339 79.4
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 1.8e-52 210.7 366 57.1
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 4.0e-52 209.5 340 79.4
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 5.2e-52 209.1 329 82.1
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 6.7e-52 208.8 329 80.5
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 6.7e-52 208.8 336 77.4
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 8.8e-52 208.4 334 77.5
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 8.8e-52 208.4 334 79.3
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 8.8e-52 208.4 335 79.4
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 8.8e-52 208.4 339 77.3
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 8.8e-52 208.4 333 79.9
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 8.8e-52 208.4 366 57.7
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 1.5e-51 207.6 332 77.4
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.0e-51 207.2 335 80.3
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 2.0e-51 207.2 335 79.4
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 2.6e-51 206.8 334 79.0
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 2.6e-51 206.8 369 64.0
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 2.6e-51 206.8 336 79.5
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 2.6e-51 206.8 329 79.9
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 2.6e-51 206.8 331 80.1
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 3.3e-51 206.5 329 79.6
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.3e-51 206.5 333 79.6
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 4.4e-51 206.1 334 78.1
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 4.4e-51 206.1 331 80.4
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 4.4e-51 206.1 331 80.4
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.7e-51 205.7 331 79.5
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 5.7e-51 205.7 336 78.9
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 7.5e-51 205.3 332 79.8
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 9.7e-51 204.9 333 66.7
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.3e-50 204.5 328 79.6
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 1.3e-50 204.5 340 78.5
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 1.3e-50 204.5 336 78.9
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 1.7e-50 204.1 337 77.7
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 1.7e-50 204.1 340 78.2
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.2e-50 203.8 328 79.6
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 2.8e-50 203.4 331 79.8
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 2.8e-50 203.4 331 79.8
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 2.8e-50 203.4 335 78.8
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 3.7e-50 203.0 329 78.7
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 4.8e-50 202.6 334 77.5
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 4.8e-50 202.6 334 77.2
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 6.3e-50 202.2 340 77.6
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 8.2e-50 201.8 327 78.9
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 8.2e-50 201.8 333 78.7
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 1.1e-49 201.4 333 78.7
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.4e-49 201.1 328 79.0
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.4e-49 201.1 316 81.6
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.4e-49 201.1 316 81.6
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.8e-49 200.7 340 77.4
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.8e-49 200.7 338 76.0
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 2.4e-49 200.3 338 77.5
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 2.4e-49 200.3 338 77.5
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 2.4e-49 200.3 338 79.3
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 2.4e-49 200.3 338 76.6
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 2.4e-49 200.3 316 82.3
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 3.1e-49 199.9 328 79.6
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.1e-49 199.9 316 81.6
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.1e-49 199.5 316 79.7
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 7.0e-49 198.7 335 77.9
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 7.0e-49 198.7 312 83.3
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 9.1e-49 198.4 336 79.2
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 1.2e-48 198.0 378 62.7
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.6e-48 197.6 344 64.0
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 2.0e-48 197.2 344 77.6
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 2.0e-48 197.2 328 77.7
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 2.0e-48 197.2 244 89.8
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 2.6e-48 196.8 327 79.8
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.6e-48 196.8 319 81.8
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 3.5e-48 196.4 319 81.8
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 7.7e-48 195.3 319 81.5
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 7.7e-48 195.3 319 81.5
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 1.0e-47 194.9 326 79.8
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 1.0e-47 194.9 326 79.8
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.0e-47 194.9 338 77.8
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.3e-47 194.5 319 81.2
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 1.3e-47 194.5 319 81.2
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.3e-47 194.5 319 81.2
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.3e-47 194.5 319 81.2
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.3e-47 194.5 240 92.9
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.2e-47 193.7 333 78.1
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 3.8e-47 193.0 308 82.5
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 8.5e-47 191.8 331 77.9
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 1.5e-46 191.0 326 77.3
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.9e-46 190.7 102 90.2
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.9e-46 190.7 102 90.2
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 2.5e-46 190.3 330 79.1
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 3.2e-46 189.9 236 91.9
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 3.2e-46 189.9 229 93.9
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 5.5e-46 189.1 236 91.5
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 7.2e-46 188.7 329 77.5
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 7.2e-46 188.7 330 77.3
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 9.4e-46 188.3 331 76.4
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.2e-45 188.0 322 78.9
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 1.6e-45 187.6 371 58.5
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 1.6e-45 187.6 330 77.9
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 3.6e-45 186.4 328 67.7
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 1.4e-44 184.5 342 63.7
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 2.3e-44 183.7 346 63.0
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 2.6e-43 180.3 340 73.8
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 4.4e-43 179.5 305 79.0
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 5.7e-43 179.1 352 72.4
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 7.5e-43 178.7 329 51.1
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.7e-42 177.6 352 73.3
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.2e-42 177.2 105 80.0
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.2e-42 177.2 240 87.1
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.2e-42 177.2 240 87.1
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 3.7e-42 176.4 247 86.6
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 1.8e-41 174.1 105 80.0
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 4.1e-41 172.9 97 86.6
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 5.4e-41 172.6 322 77.6
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 7.0e-41 172.2 99 83.8
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 7.0e-41 172.2 106 80.2
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 9.1e-41 171.8 99 83.8
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.2e-40 171.4 100 84.0
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 2.7e-40 170.2 96 85.4
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 2.7e-40 170.2 96 85.4
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 3.5e-40 169.9 235 69.8
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 4.5e-40 169.5 104 80.8
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 4.5e-40 169.5 104 79.8
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 1.0e-39 168.3 105 79.0
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.3e-39 167.9 100 85.0
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 2.2e-39 167.2 100 84.0
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.2e-39 167.2 325 73.2
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 2.9e-39 166.8 350 71.4
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 1.1e-38 164.9 96 82.3
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 1.9e-38 164.1 100 82.0
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 1.6e-37 161.0 100 81.0
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 4.7e-37 159.5 93 82.8
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.0e-36 158.3 280 75.4
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 7.5e-35 152.1 241 80.5
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.7e-34 151.0 241 79.3
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.2e-34 150.6 241 82.6
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 2.8e-34 150.2 234 81.2
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 1.3e-31 141.4 239 80.3
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 1.3e-31 141.4 241 80.5
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 3.8e-31 139.8 73 87.7
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 1.8e-28 131.0 82 78.0
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 3.0e-28 130.2 98 63.3
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 5.4e-25 119.4 222 78.8
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.7e-23 114.4 287 69.3
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 5.0e-23 112.8 240 72.9
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.5e-19 101.3 73 68.5
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 4.4e-19 99.8 65 73.8
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 8.3e-18 95.5 129 68.2
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 1.1e-17 95.1 50 82.0
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 1.9e-17 94.4 129 44.2
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.4e-17 94.0 64 62.5
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 4.1e-17 93.2 247 70.9
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 4.1e-17 93.2 91 49.5
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 4.3e-14 83.2 74 56.8
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 1.1e-12 78.6 48 81.2
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 1.1e-12 78.6 43 81.4
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.1e-12 77.0 174 90.8
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 1.9e-09 67.8 34 94.1
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 7.1e-09 65.9 74 54.1
Oeu027875.1 Olea europaea HOM05D003751 ORTHO05D004765 7.1e-09 65.9 72 45.8
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 1.6e-08 64.7 34 88.2
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 1.7e-07 61.2 28 96.4
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 1.7e-07 61.2 40 72.5
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 2.3e-07 60.8 36 83.3
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 3.9e-07 60.1 36 83.3


User provided reference genes

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