Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 1.0e-277 959.5 524 100.0
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 5.5e-202 708.0 482 78.6
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.3e-198 696.8 483 79.3
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.7e-187 659.8 507 73.0
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 2.5e-186 656.0 532 70.3
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 5.5e-186 654.8 460 77.2
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 3.1e-173 612.5 480 71.7
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 7.7e-172 607.8 489 70.3
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 5.0e-171 605.1 469 72.1
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 4.8e-166 588.6 484 69.4
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 1.2e-164 583.9 500 66.0
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 3.5e-164 582.4 500 65.6
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 4.7e-161 572.0 500 65.2
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 8.0e-161 571.2 482 66.8
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 3.0e-160 569.3 439 71.3
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 6.7e-160 568.2 496 65.3
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 3.5e-156 555.8 464 66.8
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 1.3e-155 553.9 486 64.4
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 2.2e-155 553.1 482 65.6
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 2.9e-155 552.7 439 68.6
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.9e-154 550.1 480 65.2
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 3.2e-154 549.3 458 64.8
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 4.2e-154 548.9 458 64.8
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 5.5e-154 548.5 458 64.8
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 3.6e-153 545.8 484 63.2
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 4.7e-153 545.4 458 64.4
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 2.3e-152 543.1 483 65.0
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.3e-152 543.1 458 65.3
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 3.0e-152 542.7 451 65.9
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 6.8e-152 541.6 459 65.1
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 5.7e-151 538.5 477 63.1
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 6.3e-150 535.0 445 64.9
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 4.1e-149 532.3 469 63.1
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 2.7e-148 529.6 519 60.5
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 2.7e-148 529.6 465 64.7
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 1.0e-147 527.7 431 65.7
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 1.7e-147 526.9 477 63.7
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 1.7e-147 526.9 422 66.8
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 5.0e-147 525.4 499 60.7
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 6.5e-147 525.0 487 62.2
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 3.2e-146 522.7 447 64.2
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 4.7e-145 518.8 441 65.3
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 3.0e-144 516.2 434 65.0
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.2e-143 514.2 480 62.1
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 5.7e-143 511.9 468 60.7
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.8e-142 509.6 453 61.6
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 6.3e-142 508.4 426 65.5
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 6.3e-142 508.4 426 65.5
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 1.4e-141 507.3 471 60.9
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 3.1e-141 506.1 389 71.0
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 3.1e-141 506.1 492 58.7
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 7.0e-141 505.0 453 61.6
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 1.6e-140 503.8 471 60.5
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 3.5e-140 502.7 471 60.7
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 7.8e-140 501.5 481 60.1
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 2.9e-139 499.6 512 58.0
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 3.8e-139 499.2 462 61.3
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 6.6e-139 498.4 462 60.4
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 1.5e-138 497.3 493 57.0
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 1.4e-136 490.7 487 60.0
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 3.0e-136 489.6 447 61.3
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 4.0e-136 489.2 453 60.7
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 4.0e-136 489.2 503 57.1
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 5.2e-136 488.8 504 56.5
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 6.4e-134 481.9 489 58.1
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 5.4e-133 478.8 489 57.9
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 5.9e-132 475.3 449 59.5
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 1.0e-131 474.6 497 56.7
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 1.3e-131 474.2 462 58.4
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 8.6e-131 471.5 438 60.0
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 4.7e-129 465.7 487 56.5
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 4.0e-128 462.6 465 57.8
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 6.8e-128 461.8 420 61.0
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.6e-127 459.9 452 58.6
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 7.5e-127 458.4 472 57.2
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 1.7e-126 457.2 393 63.4
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 1.4e-125 454.1 468 56.8
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.4e-125 454.1 491 55.0
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 2.0e-124 450.3 443 56.9
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 2.7e-124 449.9 471 55.4
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 3.5e-124 449.5 444 56.8
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 4.6e-124 449.1 455 55.4
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 5.0e-123 445.7 470 54.5
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 6.6e-123 445.3 476 55.3
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.1e-122 444.5 525 52.6
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 1.5e-122 444.1 474 55.1
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 1.2e-121 441.0 440 58.0
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 1.8e-120 437.2 370 63.2
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 2.3e-120 436.8 471 54.1
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 3.1e-120 436.4 487 55.0
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 4.0e-120 436.0 483 53.2
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 9.9e-119 431.4 450 56.0
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 1.7e-118 430.6 340 69.1
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 6.4e-118 428.7 448 55.6
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 2.4e-117 426.8 299 79.3
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 9.2e-117 424.9 466 53.9
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 2.1e-116 423.7 350 64.0
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 2.1e-116 423.7 448 54.0
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 1.3e-115 421.0 440 55.5
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 2.5e-114 416.8 478 52.9
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 9.9e-111 404.8 470 51.7
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 6.4e-110 402.1 472 51.7
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 1.9e-109 400.6 479 49.7
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 1.2e-105 387.9 396 57.1
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 2.2e-102 377.1 444 53.4
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 1.6e-100 370.9 439 51.9
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.5e-98 363.6 472 50.0
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 3.3e-98 363.2 466 46.6
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 4.9e-94 349.4 426 50.0
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.2e-92 344.7 293 65.2
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 6.9e-88 328.9 462 46.5
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 7.1e-85 318.9 280 63.9
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 9.3e-85 318.5 307 56.4
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 1.0e-83 315.1 298 61.7
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 1.3e-83 314.7 464 44.4
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 3.1e-80 303.5 240 65.0
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 5.1e-75 286.2 447 39.8
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 2.2e-73 280.8 386 46.6
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.0e-67 261.9 184 72.3
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 2.2e-62 244.2 185 67.6
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.6e-60 236.9 387 43.2
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 3.6e-60 236.9 429 38.2
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 1.1e-58 231.9 269 53.5
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 2.2e-57 227.6 214 63.6
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.8e-54 216.9 320 44.4
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 5.0e-54 216.5 391 36.8
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 3.5e-47 193.7 170 58.2
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 2.3e-35 154.5 155 59.4
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 4.0e-35 153.7 186 54.8
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 2.8e-33 147.5 141 61.7
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 1.7e-30 138.3 523 25.2
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 1.1e-29 135.6 234 38.9
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 3.3e-29 134.0 97 66.0
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 3.3e-29 134.0 97 66.0
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 8.9e-19 99.4 115 51.3
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 8.9e-19 99.4 165 37.0
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 1.9e-16 91.7 166 40.4
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 2.4e-16 91.3 120 47.5
TWI56G1146 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.3e-14 84.7 152 37.5
TWI56G0254 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.0e-14 84.3 147 39.5
TWI56G1263 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.0e-14 84.3 147 39.5
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 3.9e-14 84.0 65 73.8
TWI56G0921 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 5.0e-14 83.6 163 35.6
TWI56G1317 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 5.0e-14 83.6 163 35.6
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 1.5e-13 82.0 84 57.1
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 1.5e-13 82.0 84 57.1
Oeu005773.1 Olea europaea HOM05D004001 ORTHO05D004559 1.5e-13 82.0 107 49.5
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.5e-13 81.3 211 34.1
Cpa.g.sc18.136 Carica papaya HOM05D004001 ORTHO05D004559 4.3e-13 80.5 78 55.1
Hma1.2p1_3528F.1_g336630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 2.1e-12 78.2 112 50.0
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 1.5e-10 72.0 57 63.2
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 1.5e-10 72.0 46 73.9
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 2.0e-10 71.6 56 64.3
arahy.Tifrunner.gnm1.ann1.YQ72RL Arachis hypogaea HOM05D004001 ORTHO05D004559 2.6e-10 71.2 82 51.2
Dinv00151 Davidia involucrata HOM05D026811 ORTHO05D004559 9.8e-10 69.3 75 52.0
BcaC07g37285 Brassica carinata HOM05D025803 ORTHO05D027242 2.2e-09 68.2 53 67.9
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.1e-08 65.9 97 42.3
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 3.2e-08 64.3 54 63.0
arahy.Tifrunner.gnm1.ann1.Y88425 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.2e-08 64.3 50 62.0
unitig_11.g32402 Utricularia gibba HOM05D052051 ORTHO05D004559 3.5e-07 60.8 46 67.4
unitig_8.g3821 Utricularia gibba HOM05D052051 ORTHO05D004559 3.5e-07 60.8 46 67.4
Zm00001eb243030 Zea mays HOM05D006198 ORTHO05D008226 8.6e-06 56.2 76 39.5
Zm00001eb373810 Zea mays HOM05D006198 ORTHO05D008226 8.6e-06 56.2 76 39.5


User provided reference genes

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