Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038953 Camellia sinensis var. sinensis HOM05D000460 ORTHO05D110263 4.9e-88 327.8 168 100.0
CSS0029330 Camellia sinensis var. sinensis HOM05D000460 ORTHO05D111802 6.0e-78 294.3 183 88.0
CSS0027317 Camellia sinensis var. sinensis HOM05D000460 ORTHO05D108883 2.1e-38 162.9 193 58.0
FvH4_6g12780 Fragaria vesca HOM05D000460 ORTHO05D000333 7.0e-26 121.3 137 50.4
FAN14G5339 Fragaria x ananassa HOM05D000460 ORTHO05D000333 7.0e-26 121.3 137 50.4
FAN02G0428 Fragaria x ananassa HOM05D000460 ORTHO05D000333 1.6e-25 120.2 137 49.6
DCAR_028781 Daucus carota HOM05D000460 ORTHO05D000333 4.5e-25 118.6 134 50.7
Dinv37123 Davidia involucrata HOM05D000460 ORTHO05D000333 7.7e-25 117.9 111 57.7
FAN09G2460 Fragaria x ananassa HOM05D000460 ORTHO05D000333 7.7e-25 117.9 137 48.2
MD04G1138400 Malus domestica HOM05D000460 ORTHO05D000333 7.7e-25 117.9 109 57.8
CANSAT35G0740 Cannabis sativa HOM05D000460 ORTHO05D000333 1.0e-24 117.5 138 48.6
RcHm_v2.0_Chr3g0464771 Rosa chinensis HOM05D000460 ORTHO05D000333 2.9e-24 115.9 109 57.8
Actinidia13820 Actinidia chinensis HOM05D000460 ORTHO05D000333 8.5e-24 114.4 110 56.4
ClCG10G021530 Citrullus lanatus HOM05D000460 ORTHO05D000333 1.1e-23 114.0 114 55.3
Lsat_1_v5_gn_9_29660 Lactuca sativa HOM05D000460 ORTHO05D000333 1.5e-23 113.6 109 56.9
MELO3C009219.2 Cucumis melo HOM05D000460 ORTHO05D000333 1.9e-23 113.2 114 53.5
CsaV3_3G034480 Cucumis sativus L. HOM05D000460 ORTHO05D000333 1.9e-23 113.2 114 53.5
Haze_20876 Corylus avellana HOM05D000460 ORTHO05D000333 2.5e-23 112.8 111 54.1
Prupe.6G264000 Prunus persica HOM05D000460 ORTHO05D000333 4.2e-23 112.1 108 55.6
QL07p028414 Quercus lobata HOM05D000460 ORTHO05D000333 5.5e-23 111.7 141 47.5
Atru.chr8.2083 Acer truncatum HOM05D000460 ORTHO05D000333 1.2e-22 110.5 136 49.3
Cfa017306 Carpinus fangiana HOM05D000460 ORTHO05D000333 1.2e-22 110.5 111 53.2
Potri.016G103400 Populus trichocarpa HOM05D000460 ORTHO05D000333 3.6e-22 109.0 110 53.6
Thecc.05G029800 Theobroma cacao HOM05D000460 ORTHO05D000333 4.7e-22 108.6 137 48.9
Sabra16G0103200 Salix brachista HOM05D000460 ORTHO05D000333 6.1e-22 108.2 110 53.6
TWI74G1543 Tripterygium wilfordii HOM05D000460 ORTHO05D000333 6.1e-22 108.2 107 54.2
Aqoxy1G00807 Aquilegia oxysepala HOM05D000460 ORTHO05D000333 1.0e-21 107.5 108 52.8
Glyma.01G104800 Glycine max HOM05D000460 ORTHO05D000333 1.0e-21 107.5 109 54.1
Glyma.03G071700 Glycine max HOM05D000460 ORTHO05D000333 1.0e-21 107.5 109 54.1
Lj3g0015419 Lotus japonicus HOM05D000460 ORTHO05D000333 1.0e-21 107.5 109 55.0
Manes.08G081500 Manihot esculenta HOM05D000460 ORTHO05D000333 1.0e-21 107.5 109 56.9
Sed0013849 Sechium edule HOM05D000460 ORTHO05D000333 1.0e-21 107.5 114 51.8
VMungo0331G0106 Vigna mungo HOM05D000460 ORTHO05D000333 2.3e-21 106.3 109 54.1
CiPaw.10G149000 Carya illinoinensis HOM05D000460 ORTHO05D000333 3.0e-21 105.9 111 52.3
HanXRQChr03g0064931 Helianthus annuus HOM05D000460 ORTHO05D000333 3.0e-21 105.9 110 52.7
COL.COLO4_14704 Corchorus olitorius HOM05D000460 ORTHO05D000333 4.0e-21 105.5 136 47.8
Gohir.D01G210000 Gossypium hirsutum HOM05D000460 ORTHO05D000333 4.0e-21 105.5 107 54.2
Gorai.002G255700 Gossypium raimondii HOM05D000460 ORTHO05D000333 4.0e-21 105.5 107 54.2
Phvul.L001845 Phaseolus vulgaris HOM05D000460 ORTHO05D000333 4.0e-21 105.5 109 52.3
Gohir.A09G152800 Gossypium hirsutum HOM05D000460 ORTHO05D000333 5.2e-21 105.1 108 53.7
PSO339G2688 Papaver somniferum HOM05D000460 ORTHO05D000333 5.2e-21 105.1 107 52.3
Gohir.D09G148600 Gossypium hirsutum HOM05D000460 ORTHO05D000333 6.8e-21 104.8 108 53.7
Gorai.006G169500 Gossypium raimondii HOM05D000460 ORTHO05D000333 6.8e-21 104.8 108 53.7
PSO384G4290 Papaver somniferum HOM05D000460 ORTHO05D000333 6.8e-21 104.8 111 48.6
Cpa.g.sc56.57 Carica papaya HOM05D000460 ORTHO05D000333 8.8e-21 104.4 104 57.7
Gohir.A01G221100 Gossypium hirsutum HOM05D000460 ORTHO05D000333 8.8e-21 104.4 107 54.2
Nitab4.5_0000119g0420 Nicotiana tabacum HOM05D000460 ORTHO05D000333 1.2e-20 104.0 109 53.2
TWI53G0921 Tripterygium wilfordii HOM05D000460 ORTHO05D000333 1.2e-20 104.0 107 53.3
GSVIVG01034072001 Vitis vinifera HOM05D000460 ORTHO05D000333 1.2e-20 104.0 136 47.1
Duzib093G1952 Durio zibethinus HOM05D000460 ORTHO05D000333 1.5e-20 103.6 107 54.2
PGSC0003DMG400019141 Solanum tuberosum HOM05D000460 ORTHO05D000333 1.5e-20 103.6 109 52.3
Duzib128G0394 Durio zibethinus HOM05D000460 ORTHO05D000333 2.0e-20 103.2 108 53.7
Ah.06g192770 Amaranthus hybridus HOM05D000460 ORTHO05D000333 3.4e-20 102.4 110 51.8
Nitab4.5_0009380g0050 Nicotiana tabacum HOM05D000460 ORTHO05D000333 7.5e-20 101.3 109 52.3
Sopen10g036060 Solanum pennellii HOM05D000460 ORTHO05D000333 9.8e-20 100.9 107 52.3
MBI05_g02661_MAGBIO Magnolia biondii HOM05D000460 ORTHO05D000333 1.3e-19 100.5 108 50.9
Nn2g13519 Nelumbo nucifera HOM05D000460 ORTHO05D000333 2.2e-19 99.8 111 51.4
Solyc10g086650.1 Solanum lycopersicum HOM05D000460 ORTHO05D000333 2.2e-19 99.8 107 51.4
CDE02G3831 Ceratophyllum demersum HOM05D000460 ORTHO05D000333 2.8e-19 99.4 110 49.1
MSTRG.19055 Avicennia marina HOM05D000460 ORTHO05D000333 3.7e-19 99.0 107 51.4
BcaB02g07760 Brassica carinata HOM05D000460 ORTHO05D000333 3.7e-19 99.0 111 50.5
BcaC08g44652 Brassica carinata HOM05D000460 ORTHO05D000333 4.9e-19 98.6 110 50.9
C06p21710 Brassica napus HOM05D000460 ORTHO05D000333 4.9e-19 98.6 110 50.9
BolC6t37359H Brassica oleracea HOM05D000460 ORTHO05D000333 4.9e-19 98.6 110 50.9
THA.LOC104823404 Tarenaya hassleriana HOM05D000460 ORTHO05D000333 4.9e-19 98.6 110 50.9
Psat7g241600 Pisum sativum HOM05D000460 ORTHO05D000333 6.3e-19 98.2 138 43.5
PGR031G1203 Punica granatum HOM05D000460 ORTHO05D000333 8.3e-19 97.8 136 44.1
A07p21850 Brassica napus HOM05D000460 ORTHO05D000333 1.1e-18 97.4 110 50.0
BraA07t29867Z Brassica rapa HOM05D000460 ORTHO05D000333 1.1e-18 97.4 110 50.0
Cc06_g02120 Coffea canephora HOM05D000460 ORTHO05D000333 1.1e-18 97.4 109 49.5
Eucgr.B02726 Eucalyptus grandis HOM05D000460 ORTHO05D000333 1.4e-18 97.1 138 47.1
Medtr4g019520 Medicago truncatula HOM05D000460 ORTHO05D000333 4.1e-18 95.5 134 44.0
CARHR163850 Cardamine hirsuta HOM05D000460 ORTHO05D000333 5.4e-18 95.1 110 48.2
AL5G34930 Arabidopsis lyrata HOM05D000460 ORTHO05D000333 9.2e-18 94.4 110 48.2
Ca_03063_v3 Cicer arietinum L. HOM05D000460 ORTHO05D000333 9.2e-18 94.4 137 43.8
Thhalv10010914m.g Eutrema salsugineum HOM05D000460 ORTHO05D000333 9.2e-18 94.4 110 49.1
Carub.0005s2053 Capsella rubella HOM05D000460 ORTHO05D000333 1.2e-17 94.0 110 47.3
Sp5g08450 Schrenkiella parvula HOM05D000460 ORTHO05D000333 1.6e-17 93.6 110 48.2
AUR62000950 Chenopodium quinoa HOM05D000460 ORTHO05D000333 2.0e-17 93.2 107 48.6
Aa31sc27G10 Aethionema arabicum HOM05D000460 ORTHO05D000333 2.7e-17 92.8 108 46.3
AT3G53950 Arabidopsis thaliana HOM05D000460 ORTHO05D000333 2.7e-17 92.8 110 47.3
CiPaw.09G200700 Carya illinoinensis HOM05D000460 ORTHO05D000333 3.5e-17 92.4 106 49.1
CDE09G0482 Ceratophyllum demersum HOM05D000460 ORTHO05D000333 5.9e-17 91.7 110 47.3
Ciclev10011448m.g Citrus clementina HOM05D000460 ORTHO05D000333 7.7e-17 91.3 57 77.2
ATR0210G034 Amborella trichopoda HOM05D000460 ORTHO05D000333 2.3e-16 89.7 109 45.9
SalBow5G1838 Salvia bowleyana HOM05D000460 ORTHO05D000333 2.9e-16 89.4 106 48.1
Migut.J00268 Erythranthe guttata HOM05D000460 ORTHO05D000333 5.0e-16 88.6 106 46.2
SEGI_02306 Sequoiadendron giganteum HOM05D000460 ORTHO05D000333 9.5e-15 84.3 105 46.7
ECA238G4572 Erigeron canadensis HOM05D000460 ORTHO05D000333 4.7e-14 82.0 110 44.5
vmacro20192 Vaccinium macrocarpon HOM05D000460 ORTHO05D000333 2.3e-13 79.7 107 44.9
unitig_699.g19389 Utricularia gibba HOM05D000460 ORTHO05D000333 3.0e-13 79.3 134 38.8
HanXRQChr04g0115071 Helianthus annuus HOM05D000460 ORTHO05D000333 6.8e-13 78.2 110 44.5
Sc07g0007030 Simmondsia chinensis HOM05D000460 ORTHO05D000333 8.9e-13 77.8 107 44.9
vmacro20191 Vaccinium macrocarpon HOM05D000460 ORTHO05D000333 8.9e-13 77.8 112 42.9
CAN.G230.2 Capsicum annuum HOM05D000460 ORTHO05D000333 2.6e-12 76.3 89 49.4
ECA247G0198 Erigeron canadensis HOM05D000460 ORTHO05D000333 5.7e-12 75.1 90 48.9
SGA_v2.0_scaffold31G12792 Striga asiatica HOM05D000460 ORTHO05D000333 1.3e-11 73.9 102 48.0
Pp3c14_12940 Physcomitrium patens HOM05D000460 ORTHO05D000333 2.9e-11 72.8 129 36.4
Pp3c15_16510 Physcomitrium patens HOM05D000460 ORTHO05D000333 2.9e-11 72.8 102 44.1
Peaxi162Scf00014g00165 Petunia axillaris HOM05D000460 ORTHO05D000333 4.9e-11 72.0 89 47.2
Mapoly0041s0071 Marchantia polymorpha HOM05D000460 ORTHO05D000333 6.4e-11 71.6 103 38.8
Mapoly0345s0001 Marchantia polymorpha HOM05D000460 ORTHO05D000333 6.4e-11 71.6 103 38.8
Pp3c6_26670 Physcomitrium patens HOM05D000460 ORTHO05D000333 6.4e-11 71.6 102 45.1
SMO137G0210 Selaginella moellendorffii HOM05D000460 ORTHO05D000333 6.4e-11 71.6 109 39.4
Mapoly0003s0265 Marchantia polymorpha HOM05D000460 ORTHO05D000333 8.3e-11 71.2 103 39.8
Lsat_1_v5_gn_2_60621 Lactuca sativa HOM05D000460 ORTHO05D000333 1.1e-10 70.9 110 40.9
Mapoly0182s0015 Marchantia polymorpha HOM05D000460 ORTHO05D000333 1.1e-10 70.9 129 37.2
Pp3c21_3640 Physcomitrium patens HOM05D000460 ORTHO05D000333 2.4e-10 69.7 130 33.8
Pp3c4_20120 Physcomitrium patens HOM05D000460 ORTHO05D000333 2.4e-10 69.7 102 38.2
Mapoly0049s0073 Marchantia polymorpha HOM05D000460 ORTHO05D000333 3.2e-10 69.3 103 40.8
Pp3c21_2480 Physcomitrium patens HOM05D000460 ORTHO05D000333 3.2e-10 69.3 129 35.7
Pp3c3_27340 Physcomitrium patens HOM05D000460 ORTHO05D000333 5.4e-10 68.6 123 38.2
AUR62005018 Chenopodium quinoa HOM05D000460 ORTHO05D000333 7.0e-10 68.2 89 44.9
SMO179G0002 Selaginella moellendorffii HOM05D000460 ORTHO05D000333 7.0e-10 68.2 115 38.3
SMO119G0118 Selaginella moellendorffii HOM05D000460 ORTHO05D000333 1.2e-09 67.4 115 38.3
AagrBONN_evm.TU.Sc2ySwM_228.4697 Anthoceros agrestis HOM05D000460 ORTHO05D000333 1.6e-09 67.0 106 36.8
Pp3c16_1160 Physcomitrium patens HOM05D000460 ORTHO05D000333 1.6e-09 67.0 102 40.2
AagrBONN_evm.TU.Sc2ySwM_117.289 Anthoceros agrestis HOM05D000460 ORTHO05D000333 2.7e-09 66.2 105 39.0
Oeu025154.1 Olea europaea HOM05D000460 ORTHO05D000333 2.7e-09 66.2 91 44.0
Pp3c3_510 Physcomitrium patens HOM05D000460 ORTHO05D000333 4.6e-09 65.5 49 63.3
Pp3c10_8570 Physcomitrium patens HOM05D000460 ORTHO05D000333 5.9e-09 65.1 125 35.2
Pp3c17_16620 Physcomitrium patens HOM05D000460 ORTHO05D000333 5.9e-09 65.1 102 36.3
Pp3c2_25820 Physcomitrium patens HOM05D000460 ORTHO05D000333 5.9e-09 65.1 122 33.6
Pp3c2_25840 Physcomitrium patens HOM05D000460 ORTHO05D000333 5.9e-09 65.1 122 33.6
Pp3c13_7000 Physcomitrium patens HOM05D000460 ORTHO05D000333 1.3e-08 63.9 124 36.3
Pp3c4_5930 Physcomitrium patens HOM05D000460 ORTHO05D000333 1.3e-08 63.9 48 60.4
Pp3c4_5940 Physcomitrium patens HOM05D000460 ORTHO05D000333 1.3e-08 63.9 48 60.4
Pp3c26_8190 Physcomitrium patens HOM05D000460 ORTHO05D000333 1.7e-08 63.5 122 32.8
Pp3c3_1540 Physcomitrium patens HOM05D000460 ORTHO05D000333 1.7e-08 63.5 125 33.6
CARHR058030 Cardamine hirsuta HOM05D000460 ORTHO05D000333 3.0e-08 62.8 72 41.7
Pp3c19_17290 Physcomitrium patens HOM05D000460 ORTHO05D000333 3.9e-08 62.4 122 32.8
Pp3c12_7500 Physcomitrium patens HOM05D000460 ORTHO05D000333 5.0e-08 62.0 102 35.3
SMO119G0332 Selaginella moellendorffii HOM05D000460 ORTHO05D000333 5.0e-08 62.0 57 54.4
Pp3c12_9480 Physcomitrium patens HOM05D000460 ORTHO05D000333 6.6e-08 61.6 103 37.9
Pp3c3_25260 Physcomitrium patens HOM05D000460 ORTHO05D000333 6.6e-08 61.6 57 49.1
Pp3c3_25264 Physcomitrium patens HOM05D000460 ORTHO05D000333 6.6e-08 61.6 57 49.1
Pp3c1_19060 Physcomitrium patens HOM05D000460 ORTHO05D000333 8.6e-08 61.2 120 35.8
Pp3c1_28460 Physcomitrium patens HOM05D000460 ORTHO05D000333 8.6e-08 61.2 116 35.3
Pp3c14_12990 Physcomitrium patens HOM05D000460 ORTHO05D000333 1.1e-07 60.8 52 51.9
AT1G75620 Arabidopsis thaliana HOM05D000460 ORTHO05D000333 2.5e-07 59.7 102 34.3
Haze_04312 Corylus avellana HOM05D000460 ORTHO05D000333 2.5e-07 59.7 120 30.8
Thhalv10018361m.g Eutrema salsugineum HOM05D000460 ORTHO05D000333 2.5e-07 59.7 102 32.4
Pp3c8_13370 Physcomitrium patens HOM05D000460 ORTHO05D000333 2.5e-07 59.7 124 31.5
AagrBONN_evm.TU.Sc2ySwM_362.1154 Anthoceros agrestis HOM05D000460 ORTHO05D000333 3.3e-07 59.3 52 50.0
Pp3c12_15000 Physcomitrium patens HOM05D000460 ORTHO05D000333 5.6e-07 58.5 48 54.2
THA.LOC104811394 Tarenaya hassleriana HOM05D000460 ORTHO05D000333 5.6e-07 58.5 101 36.6
Pp3c2_11730 Physcomitrium patens HOM05D000460 ORTHO05D000333 7.3e-07 58.2 49 57.1
A07p16190 Brassica napus HOM05D000460 ORTHO05D000333 9.5e-07 57.8 129 29.5
BraA07t29343Z Brassica rapa HOM05D000460 ORTHO05D000333 9.5e-07 57.8 129 29.5
Carub.0002s2246 Capsella rubella HOM05D000460 ORTHO05D000333 9.5e-07 57.8 102 32.4
Pp3c8_13350 Physcomitrium patens HOM05D000460 ORTHO05D000333 1.2e-06 57.4 117 32.5
Pp3c2_15200 Physcomitrium patens HOM05D000460 ORTHO05D000333 1.6e-06 57.0 49 57.1
Pp3c4_7540 Physcomitrium patens HOM05D000460 ORTHO05D000333 1.6e-06 57.0 50 50.0
Pp3c26_2270 Physcomitrium patens HOM05D000460 ORTHO05D000333 2.1e-06 56.6 102 37.3
Pp3c4_10820 Physcomitrium patens HOM05D000460 ORTHO05D000333 2.1e-06 56.6 49 49.0
BcaC08g47044 Brassica carinata HOM05D000460 ORTHO05D000333 2.8e-06 56.2 102 31.4
BcaC08g47334 Brassica carinata HOM05D000460 ORTHO05D000333 2.8e-06 56.2 102 31.4
A07p41170 Brassica napus HOM05D000460 ORTHO05D000333 2.8e-06 56.2 102 31.4
C06p49590 Brassica napus HOM05D000460 ORTHO05D000333 2.8e-06 56.2 102 31.4
BolC6t39997H Brassica oleracea HOM05D000460 ORTHO05D000333 2.8e-06 56.2 102 31.4
BraA07t31652Z Brassica rapa HOM05D000460 ORTHO05D000333 2.8e-06 56.2 102 31.4
Migut.K00485 Erythranthe guttata HOM05D000460 ORTHO05D000333 4.7e-06 55.5 114 29.8
AagrBONN_evm.TU.Sc2ySwM_368.3234 Anthoceros agrestis HOM05D000460 ORTHO05D000333 6.2e-06 55.1 115 35.7
AL2G35600 Arabidopsis lyrata HOM05D000460 ORTHO05D000333 6.2e-06 55.1 102 32.4
vmacro20629 Vaccinium macrocarpon HOM05D000460 ORTHO05D000333 6.2e-06 55.1 106 33.0
ATR0620G095 Amborella trichopoda HOM05D000460 ORTHO05D000333 8.0e-06 54.7 106 31.1
A06p16110 Brassica napus HOM05D000460 ORTHO05D000333 8.0e-06 54.7 50 46.0
C07p23640 Brassica napus HOM05D000460 ORTHO05D000333 8.0e-06 54.7 129 28.7
BraA06t24717Z Brassica rapa HOM05D000460 ORTHO05D000333 8.0e-06 54.7 50 46.0
Sc20g0000170 Simmondsia chinensis HOM05D000460 ORTHO05D000333 8.0e-06 54.7 109 32.1
THA.LOC104814033 Tarenaya hassleriana HOM05D000460 ORTHO05D000333 8.0e-06 54.7 101 29.7


User provided reference genes

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