Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.1e-45 186.4 104 100.0
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.5e-34 149.4 106 78.3
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 5.6e-34 147.5 106 82.1
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 2.7e-28 128.6 104 64.4
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 2.7e-28 128.6 104 65.4
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 8.7e-27 123.6 106 67.9
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.1e-26 123.2 97 70.1
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 4.3e-26 121.3 104 60.6
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 4.3e-26 121.3 105 65.7
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 7.4e-26 120.6 105 66.7
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.3e-25 119.8 106 63.2
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 1.6e-25 119.4 104 59.6
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 8.2e-25 117.1 106 62.3
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 4.1e-24 114.8 104 57.7
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 4.1e-24 114.8 104 57.7
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 4.1e-24 114.8 106 63.2
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 5.3e-24 114.4 105 63.8
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 6.9e-24 114.0 106 58.5
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.2e-23 113.2 99 62.6
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.0e-23 112.5 106 58.5
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 2.6e-23 112.1 106 60.4
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 7.6e-23 110.5 99 62.6
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 2.2e-22 109.0 100 60.0
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 2.9e-22 108.6 104 62.5
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 5.0e-22 107.8 104 57.7
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 5.0e-22 107.8 105 56.2
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 5.0e-22 107.8 105 56.2
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 8.4e-22 107.1 109 66.1
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 1.1e-21 106.7 106 56.6
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.1e-21 106.7 95 61.1
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.4e-21 106.3 99 57.6
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.9e-21 105.9 99 59.6
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.9e-21 105.9 106 56.6
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 3.2e-21 105.1 99 57.6
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 4.2e-21 104.8 104 60.6
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 5.5e-21 104.4 98 58.2
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 5.5e-21 104.4 93 62.4
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 5.5e-21 104.4 106 56.6
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 5.5e-21 104.4 81 67.9
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 9.3e-21 103.6 93 60.2
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.2e-20 103.2 100 59.0
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.2e-20 103.2 100 60.0
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 1.2e-20 103.2 104 53.8
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.2e-20 103.2 99 58.6
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 1.6e-20 102.8 97 57.7
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.1e-20 102.4 99 58.6
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 2.7e-20 102.1 99 58.6
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 3.5e-20 101.7 98 60.2
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 3.5e-20 101.7 98 60.2
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 4.6e-20 101.3 97 57.7
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 4.6e-20 101.3 93 61.3
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 4.6e-20 101.3 95 56.8
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 4.6e-20 101.3 105 57.1
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 6.1e-20 100.9 105 55.2
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 6.1e-20 100.9 104 54.8
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 6.1e-20 100.9 92 58.7
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 7.9e-20 100.5 95 63.2
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.3e-19 99.8 105 51.4
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 1.8e-19 99.4 106 55.7
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 2.3e-19 99.0 101 56.4
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 2.3e-19 99.0 98 64.3
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 3.9e-19 98.2 111 54.1
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 5.1e-19 97.8 99 54.5
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 5.1e-19 97.8 99 54.5
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 5.1e-19 97.8 85 63.5
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 5.1e-19 97.8 102 57.8
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 1.5e-18 96.3 108 60.2
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 2.5e-18 95.5 106 50.9
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 5.7e-18 94.4 95 58.9
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 7.4e-18 94.0 95 53.7
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 1.3e-17 93.2 107 51.4
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 1.6e-17 92.8 107 52.3
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 1.6e-17 92.8 104 53.8
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 2.8e-17 92.0 106 52.8
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 2.8e-17 92.0 80 63.8
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 2.8e-17 92.0 107 48.6
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 3.7e-17 91.7 80 60.0
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 4.8e-17 91.3 80 61.2
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 4.8e-17 91.3 106 53.8
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 6.3e-17 90.9 75 64.0
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 6.3e-17 90.9 104 56.7
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 6.3e-17 90.9 98 57.1
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 8.2e-17 90.5 101 52.5
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 1.1e-16 90.1 80 58.8
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.4e-16 89.7 101 54.5
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.4e-16 89.7 101 52.5
Actinidia01613 Actinidia chinensis HOM05D000487 ORTHO05D000405 2.4e-16 89.0 83 63.9
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 4.1e-16 88.2 109 47.7
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 6.9e-16 87.4 98 53.1
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 9.0e-16 87.0 102 53.9
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 1.2e-15 86.7 100 52.0
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 1.5e-15 86.3 99 53.5
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.5e-15 86.3 104 52.9
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.5e-15 86.3 104 52.9
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 1.5e-15 86.3 94 55.3
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 2.0e-15 85.9 80 61.2
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 2.0e-15 85.9 93 50.5
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 2.6e-15 85.5 96 54.2
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 2.6e-15 85.5 91 54.9
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 3.4e-15 85.1 101 51.5
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.4e-15 85.1 104 52.9
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 3.4e-15 85.1 99 48.5
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 3.4e-15 85.1 93 49.5
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 3.4e-15 85.1 93 49.5
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 4.5e-15 84.7 99 49.5
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 5.9e-15 84.3 93 51.6
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 7.7e-15 84.0 104 55.8
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 1.3e-14 83.2 72 69.4
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.3e-14 83.2 103 50.5
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.3e-14 83.2 82 56.1
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 1.3e-14 83.2 91 52.7
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 2.9e-14 82.0 96 52.1
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 3.8e-14 81.6 78 53.8
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 6.5e-14 80.9 104 51.0
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 8.5e-14 80.5 99 49.5
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 8.5e-14 80.5 98 51.0
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 1.1e-13 80.1 57 70.2
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 1.4e-13 79.7 94 53.2
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 2.5e-13 79.0 99 48.5
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 3.2e-13 78.6 100 55.0
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 3.2e-13 78.6 105 48.6
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 3.2e-13 78.6 94 50.0
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 3.2e-13 78.6 92 51.1
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 4.2e-13 78.2 100 52.0
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 5.5e-13 77.8 97 47.4
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 5.5e-13 77.8 104 51.0
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 5.5e-13 77.8 92 46.7
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 1.2e-12 76.6 108 43.5
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 1.6e-12 76.3 92 50.0
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 2.7e-12 75.5 93 48.4
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 3.6e-12 75.1 77 63.6
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 3.6e-12 75.1 93 45.2
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 4.6e-12 74.7 85 49.4
Sopen01g045750 Solanum pennellii HOM05D004289 ORTHO05D005141 6.1e-12 74.3 106 51.9
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 7.9e-12 73.9 97 57.7
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 1.0e-11 73.6 91 49.5
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 1.0e-11 73.6 75 53.3
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 1.4e-11 73.2 97 56.7
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 1.8e-11 72.8 91 48.4
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 3.0e-11 72.0 75 53.3
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 3.9e-11 71.6 104 51.9
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 6.7e-11 70.9 99 45.5
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 8.8e-11 70.5 74 51.4
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 8.8e-11 70.5 72 63.9
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 1.1e-10 70.1 99 50.5
Actinidia26179 Actinidia chinensis HOM05D004289 ORTHO05D005141 1.5e-10 69.7 61 67.2
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 2.0e-10 69.3 53 64.2
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 3.3e-10 68.6 72 54.2
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 3.3e-10 68.6 93 45.2
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 5.7e-10 67.8 74 51.4
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 7.4e-10 67.4 92 45.7
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 9.7e-10 67.0 91 46.2
DCAR_001703 Daucus carota HOM05D004289 ORTHO05D005141 1.7e-09 66.2 104 50.0
Lsat_1_v5_gn_7_75620 Lactuca sativa HOM05D004289 ORTHO05D233411 4.8e-09 64.7 104 50.0
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 6.3e-09 64.3 97 40.2
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 1.8e-08 62.8 77 46.8
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 2.0e-07 59.3 78 43.6
Peaxi162Scf00011g00155 Petunia axillaris HOM05D004289 ORTHO05D005141 2.2e-06 55.8 83 50.6
Dinv19426 Davidia involucrata HOM05D004289 ORTHO05D005141 5.0e-06 54.7 54 63.0
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 8.5e-06 53.9 77 42.9
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 8.5e-06 53.9 77 42.9
Dinv29606 Davidia involucrata HOM05D004289 ORTHO05D005141 8.5e-06 53.9 50 62.0


User provided reference genes

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