Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038946 Camellia sinensis var. sinensis HOM05D007538 ORTHO05D009464 4.8e-191 671.0 339 100.0
CSS0028782 Camellia sinensis var. sinensis HOM05D007538 ORTHO05D009464 9.0e-190 666.8 339 99.1
Dinv25258 Davidia involucrata HOM05D007538 ORTHO05D009464 8.6e-108 394.4 310 68.1
Actinidia01319 Actinidia chinensis HOM05D007538 ORTHO05D009464 1.7e-103 380.2 274 75.5
vmacro00280 Vaccinium macrocarpon HOM05D007538 ORTHO05D009464 1.7e-92 343.6 328 61.3
Rhsim11G0021400 Rhododendron simsii HOM05D007538 ORTHO05D009464 2.4e-89 333.2 314 62.1
Hma1.2p1_1569F.1_g291220 Hydrangea macrophylla HOM05D007538 ORTHO05D009464 1.7e-87 327.0 299 59.9
Cfa012515 Carpinus fangiana HOM05D007538 ORTHO05D009464 3.9e-76 289.3 319 54.5
TAR629G0149 Trochodendron aralioides HOM05D007538 ORTHO05D009464 5.8e-72 275.4 341 50.4
GSVIVG01013092001 Vitis vinifera HOM05D007538 ORTHO05D009464 9.3e-70 268.1 314 51.6
MD06G1026300 Malus domestica HOM05D007538 ORTHO05D009464 3.0e-68 263.1 323 49.2
QL12p001632 Quercus lobata HOM05D007538 ORTHO05D009464 3.0e-68 263.1 317 50.2
FAN08G1825 Fragaria x ananassa HOM05D007538 ORTHO05D009464 1.5e-67 260.8 326 49.7
FAN13G1023 Fragaria x ananassa HOM05D007538 ORTHO05D009464 1.9e-67 260.4 326 49.4
Thecc.03G310000 Theobroma cacao HOM05D007538 ORTHO05D009464 1.3e-66 257.7 321 48.6
RcHm_v2.0_Chr7g0211801 Rosa chinensis HOM05D007538 ORTHO05D009464 2.8e-66 256.5 321 48.0
Ciclev10001787m.g Citrus clementina HOM05D007538 ORTHO05D009464 3.7e-66 256.1 338 46.7
CiPaw.12G068100 Carya illinoinensis HOM05D007538 ORTHO05D009464 3.4e-64 249.6 319 50.8
Potri.001G137000 Populus trichocarpa HOM05D007538 ORTHO05D009464 1.1e-62 244.6 327 49.2
Haze_08148 Corylus avellana HOM05D007538 ORTHO05D009464 3.2e-62 243.0 307 51.5
FvH4_5g23080 Fragaria vesca HOM05D007538 ORTHO05D009464 9.4e-62 241.5 324 47.8
Duzib205G0978 Durio zibethinus HOM05D007538 ORTHO05D009464 4.6e-61 239.2 323 47.7
Gorai.008G224100 Gossypium raimondii HOM05D007538 ORTHO05D009464 1.4e-60 237.7 320 46.6
Gohir.D12G208500 Gossypium hirsutum HOM05D007538 ORTHO05D009464 3.0e-60 236.5 320 46.2
TWI60G0985 Tripterygium wilfordii HOM05D007538 ORTHO05D009464 8.8e-60 235.0 320 47.2
FAN18G3589 Fragaria x ananassa HOM05D007538 ORTHO05D009464 5.3e-57 225.7 320 45.9
Aqoxy3G02177 Aquilegia oxysepala HOM05D007538 ORTHO05D009464 9.1e-57 224.9 319 46.7
Prupe.5G028100 Prunus persica HOM05D007538 ORTHO05D009464 9.1e-57 224.9 257 52.9
Gohir.A12G206200 Gossypium hirsutum HOM05D007538 ORTHO05D009464 2.6e-56 223.4 318 45.0
FAN04G2865 Fragaria x ananassa HOM05D007538 ORTHO05D009464 3.4e-56 223.0 316 46.5
CANSAT21G1184 Cannabis sativa HOM05D007538 ORTHO05D009464 4.5e-56 222.6 320 45.0
Eucgr.E00229 Eucalyptus grandis HOM05D007538 ORTHO05D009464 6.5e-55 218.8 330 44.8
Sabra01G0106100 Salix brachista HOM05D007538 ORTHO05D009464 8.5e-55 218.4 309 46.6
Oeu027088.1 Olea europaea HOM05D007538 ORTHO05D009464 3.2e-54 216.5 351 44.4
Nn1g00207 Nelumbo nucifera HOM05D007538 ORTHO05D009464 2.1e-53 213.8 321 42.4
Atru.chr6.1522 Acer truncatum HOM05D007538 ORTHO05D009464 3.3e-51 206.5 275 47.6
COL.COLO4_16943 Corchorus olitorius HOM05D007538 ORTHO05D009464 3.3e-51 206.5 324 45.1
Nitab4.5_0000529g0180 Nicotiana tabacum HOM05D007538 ORTHO05D009464 7.4e-51 205.3 301 45.2
Nitab4.5_0000809g0070 Nicotiana tabacum HOM05D007538 ORTHO05D009464 1.8e-49 200.7 308 44.5
PGSC0003DMG400014793 Solanum tuberosum HOM05D007538 ORTHO05D009464 3.1e-49 199.9 315 44.4
Cc08_g03440 Coffea canephora HOM05D007538 ORTHO05D009464 9.1e-49 198.4 320 43.8
AUR62007351 Chenopodium quinoa HOM05D007538 ORTHO05D009464 2.0e-48 197.2 314 41.7
TWI15G0751 Tripterygium wilfordii HOM05D007538 ORTHO05D009464 2.6e-48 196.8 294 44.2
Solyc08g076430.3 Solanum lycopersicum HOM05D007538 ORTHO05D009464 3.5e-48 196.4 315 43.5
Sopen08g025010 Solanum pennellii HOM05D007538 ORTHO05D009464 2.2e-47 193.7 315 43.2
AUR62018643 Chenopodium quinoa HOM05D007538 ORTHO05D009464 2.9e-47 193.4 312 40.4
Lj2g0003780 Lotus japonicus HOM05D007538 ORTHO05D009464 3.8e-47 193.0 321 43.3
VMungo1215G0128 Vigna mungo HOM05D007538 ORTHO05D009464 8.5e-47 191.8 320 42.2
Lalb_Chr05g0215781 Lupinus albus HOM05D007538 ORTHO05D009464 3.2e-46 189.9 322 42.2
Peaxi162Scf00170g00623 Petunia axillaris HOM05D007538 ORTHO05D009464 7.2e-46 188.7 307 42.0
Glyma.09G207600 Glycine max HOM05D007538 ORTHO05D009464 9.4e-46 188.3 316 41.1
Lalb_Chr16g0381091 Lupinus albus HOM05D007538 ORTHO05D009464 9.4e-46 188.3 317 42.3
DCAR_008224 Daucus carota HOM05D007538 ORTHO05D009464 6.1e-45 185.7 356 39.9
Manes.17G017000 Manihot esculenta HOM05D007538 ORTHO05D009464 6.1e-45 185.7 354 39.5
CANSAT21G1947 Cannabis sativa HOM05D007538 ORTHO05D009464 1.4e-44 184.5 295 42.0
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 5.2e-44 182.6 253 49.0
Phvul.002G136900 Phaseolus vulgaris HOM05D007538 ORTHO05D009464 6.7e-44 182.2 319 40.4
PGR042G1771 Punica granatum HOM05D007538 ORTHO05D009464 1.1e-43 181.4 322 39.8
Hund14370 Selenicereus undatus HOM05D007538 ORTHO05D009464 1.4e-41 174.5 326 40.2
TPR.G19431 Trifolium pratense HOM05D007538 ORTHO05D009464 2.6e-40 170.2 315 39.4
FAN18G1171 Fragaria x ananassa HOM05D007538 ORTHO05D009464 4.5e-40 169.5 307 39.4
EL10Ac5g12015 Beta vulgaris HOM05D007538 ORTHO05D009464 2.5e-38 163.7 303 39.6
ECA240G2786 Erigeron canadensis HOM05D007538 ORTHO05D009464 4.2e-38 162.9 317 39.7
Glyma.01G014500 Glycine max HOM05D007538 ORTHO05D009464 4.7e-37 159.5 265 39.2
MSTRG.13737 Avicennia marina HOM05D007538 ORTHO05D009464 6.1e-37 159.1 346 37.6
Migut.E00746 Erythranthe guttata HOM05D007538 ORTHO05D009464 1.0e-36 158.3 317 41.0
Ca_25180_v3 Cicer arietinum L. HOM05D007538 ORTHO05D009464 3.0e-36 156.8 319 36.7
Medtr5g029310 Medicago truncatula HOM05D007538 ORTHO05D009464 2.6e-35 153.7 319 36.7
Sc01g0007170 Simmondsia chinensis HOM05D007538 ORTHO05D009464 2.6e-35 153.7 237 41.4
ClCG10G001280 Citrullus lanatus HOM05D007538 ORTHO05D009464 9.7e-35 151.8 306 39.2
Psat0s3175g0080 Pisum sativum HOM05D007538 ORTHO05D009464 2.8e-34 150.2 300 38.3
arahy.Tifrunner.gnm1.ann1.IVG2V7 Arachis hypogaea HOM05D007538 ORTHO05D009464 3.7e-34 149.8 330 35.8
arahy.Tifrunner.gnm1.ann1.UGGX0P Arachis hypogaea HOM05D007538 ORTHO05D009464 3.7e-34 149.8 330 35.8
MELO3C013823.2 Cucumis melo HOM05D007538 ORTHO05D009464 4.8e-34 149.4 302 39.1
Ah.12g055490 Amaranthus hybridus HOM05D007538 ORTHO05D009464 6.3e-34 149.1 205 46.8
SalBow6G3044 Salvia bowleyana HOM05D007538 ORTHO05D009464 6.3e-34 149.1 338 36.4
HanXRQChr03g0083271 Helianthus annuus HOM05D007538 ORTHO05D009464 7.0e-33 145.6 299 36.1
Sed0002033 Sechium edule HOM05D007538 ORTHO05D009464 9.1e-33 145.2 311 37.0
CsaV3_3G001350 Cucumis sativus L. HOM05D007538 ORTHO05D009464 4.5e-32 142.9 304 39.1
PSO063G5413 Papaver somniferum HOM05D007538 ORTHO05D009464 2.2e-31 140.6 321 37.4
Lsat_1_v5_gn_6_80020 Lactuca sativa HOM05D007538 ORTHO05D009464 8.3e-26 122.1 289 35.3
CAN.G1987.3 Capsicum annuum HOM05D007538 ORTHO05D009464 1.8e-25 120.9 198 42.9
Cpa.g.sc208.8 Carica papaya HOM05D007538 ORTHO05D009464 1.2e-24 118.2 244 38.9
Os02g0697200 Oryza sativa ssp. japonica HOM05D007538 ORTHO05D009464 2.1e-21 107.5 351 29.9
unitig_22.g5510 Utricularia gibba HOM05D007538 ORTHO05D009464 1.2e-19 101.7 326 33.4
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 2.8e-18 97.1 262 34.7
MBI04_g44375_MAGBIO Magnolia biondii HOM05D007538 ORTHO05D009464 7.0e-17 92.4 157 40.8
Zm00001eb187890 Zea mays HOM05D007538 ORTHO05D009464 3.5e-16 90.1 338 28.7
SEGI_18774 Sequoiadendron giganteum HOM05D007538 ORTHO05D009464 4.3e-14 83.2 327 29.7
Psat0s1646g0240 Pisum sativum HOM05D007538 ORTHO05D009464 1.0e-12 78.6 158 37.3
MBI04_g32200_MAGBIO Magnolia biondii HOM05D007538 ORTHO05D009464 2.0e-11 74.3 83 49.4
HPP92_020896 Vanilla planifolia HOM05D007538 ORTHO05D009464 2.6e-11 73.9 312 26.6
Aqoxy1G00983 Aquilegia oxysepala HOM05D007538 ORTHO05D009464 1.9e-09 67.8 196 32.1
Zm00001eb251400 Zea mays HOM05D007538 ORTHO05D009464 4.6e-08 63.2 228 28.1
ATR0829G194 Amborella trichopoda HOM05D007538 ORTHO05D009464 9.5e-06 55.5 67 43.3


User provided reference genes

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