Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 2377.1 1203 100.0
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 2118.2 1200 89.1
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 2113.2 1200 88.8
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 2017.7 1282 81.5
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 2017.7 1282 81.5
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1972.2 1201 82.2
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1965.3 1201 82.0
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1948.7 1201 81.9
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1939.9 1283 78.2
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1934.8 1201 80.8
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1933.7 1339 76.5
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1932.5 1201 81.3
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1927.1 1201 81.5
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1926.0 1201 81.2
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1918.7 1204 80.6
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1913.3 1293 75.6
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1905.6 1204 81.6
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1898.2 1202 79.3
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1892.1 1199 78.7
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1889.8 1203 79.2
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1884.0 1201 79.4
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1882.5 1201 79.4
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1879.8 1201 78.4
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1879.0 1203 78.9
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1877.8 1201 78.2
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1869.7 1204 79.2
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1869.7 1202 78.4
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1869.4 1202 78.0
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1867.8 1218 78.7
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1866.3 1201 78.2
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1865.5 1202 78.4
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1864.7 1202 78.2
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1863.2 1200 78.8
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1862.8 1199 78.9
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1860.9 1201 77.4
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1857.4 1203 78.3
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1857.0 1202 78.3
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1856.6 1209 77.6
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1856.6 1203 78.3
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1856.3 1217 76.7
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1855.5 1201 77.8
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1854.0 1201 78.5
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1854.0 1201 77.3
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1849.7 1217 76.3
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1849.3 1201 76.9
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1849.3 1205 78.0
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1847.4 1212 77.6
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1847.0 1201 77.7
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1846.6 1205 78.5
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1844.3 1209 77.1
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1840.1 1200 78.2
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1839.3 1202 77.3
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1838.2 1202 77.3
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1837.8 1217 76.0
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1836.6 1133 81.9
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1833.9 1202 77.1
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1833.9 1200 78.2
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1833.2 1205 77.2
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1832.8 1202 77.0
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1832.0 1198 77.0
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1830.8 1204 77.4
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1829.7 1198 76.9
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1829.7 1202 77.0
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1828.9 1198 77.7
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1820.8 1201 76.5
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1820.1 1208 76.4
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1818.5 1208 76.4
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1815.8 1208 76.2
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1813.5 1237 76.3
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1812.3 1201 76.1
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1811.6 1205 76.0
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1808.9 1199 76.9
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1807.3 1208 75.8
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1807.0 1199 76.4
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1806.6 1202 75.7
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1786.2 1206 75.0
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1782.3 1198 75.9
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1781.9 1202 75.1
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1760.7 1199 75.3
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1749.9 1213 73.0
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1743.0 1103 81.3
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1733.8 1200 73.8
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1728.8 1215 73.8
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1717.2 1206 73.3
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1651.7 1201 69.9
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1645.9 1211 69.2
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1644.8 1200 71.4
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1610.1 1012 79.9
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1607.4 1044 77.6
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1595.5 1044 77.1
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1593.6 1036 78.3
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1581.6 1203 66.0
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1558.1 1025 77.9
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1549.3 1211 64.6
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1515.0 980 78.1
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1514.6 979 78.4
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1502.3 897 85.7
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1484.2 996 76.0
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1480.3 1060 70.9
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1379.0 939 75.8
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1344.7 827 81.0
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1326.6 1220 57.2
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1281.5 866 73.9
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1220.7 1235 53.0
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1166.8 906 66.3
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1131.3 1224 51.7
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1109.0 1222 50.9
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.4e-279 965.3 1201 44.7
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 1.2e-273 947.2 1378 40.6
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 9.1e-269 931.0 518 89.6
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.3e-248 863.2 1241 42.1
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.3e-230 804.3 1148 42.6
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 2.5e-194 683.7 424 80.9
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 2.9e-158 563.9 431 68.7
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.4e-157 561.6 489 63.4
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 7.2e-157 559.3 749 44.5
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 5.5e-149 533.1 324 80.2
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 4.0e-147 526.9 306 83.0
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 1.8e-139 501.5 348 75.0
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 8.6e-134 482.6 323 71.2
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 1.6e-124 451.8 292 78.4
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 2.2e-113 414.8 329 67.8
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 3.5e-103 380.9 360 55.0
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 2.3e-102 378.3 308 64.0
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 8.9e-99 366.3 391 54.2
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 1.9e-88 332.0 289 56.7
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.1e-87 328.6 256 66.8
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 1.1e-69 269.6 206 75.2
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 1.5e-66 259.2 161 79.5
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 1.9e-64 252.3 274 54.0
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 1.2e-50 206.5 142 72.5
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 4.2e-48 198.0 160 61.9
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 4.7e-47 194.5 138 63.8
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 7.9e-47 193.7 116 75.9
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 1.8e-46 192.6 113 78.8
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.2e-42 179.9 194 54.1
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.6e-39 169.5 256 42.6
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 3.1e-35 155.2 161 59.0
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 9.1e-35 153.7 304 30.6
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 2.3e-30 139.0 82 82.9
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.0e-29 136.0 160 47.5
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 3.7e-20 105.1 73 65.8
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 3.1e-19 102.1 59 79.7
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 1.0e-17 97.1 62 75.8
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 5.5e-16 91.3 236 32.6
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 7.5e-13 80.9 45 77.8
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 5.4e-11 74.7 60 68.3
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 9.2e-11 73.9 44 70.5
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 1.2e-10 73.6 74 59.5
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 1.2e-10 73.6 74 59.5
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 3.9e-09 68.6 70 51.4
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 8.6e-09 67.4 38 78.9
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 4.3e-08 65.1 55 54.5
Nn4g24965 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.6e-07 63.2 45 66.7
Dinv28429 Davidia involucrata HOM05D004589 ORTHO05D178633 6.1e-07 61.2 45 73.3
SMO364G0797 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.3e-06 59.3 157 31.2


User provided reference genes

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