Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 7.4e-253 876.7 439 100.0
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 7.4e-253 876.7 439 100.0
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 3.7e-244 847.8 438 96.6
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 2.3e-222 775.4 439 86.8
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.9e-211 739.2 439 84.1
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.3e-204 716.5 439 82.2
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 5.4e-203 711.1 427 81.7
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 2.5e-192 675.6 436 76.4
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 2.6e-189 665.6 432 74.3
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 3.4e-189 665.2 439 75.2
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 4.4e-189 664.8 439 73.3
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 5.8e-189 664.5 432 73.8
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 7.6e-189 664.1 433 73.2
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 2.9e-188 662.1 439 73.6
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 4.9e-188 661.4 435 72.6
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 8.4e-188 660.6 439 73.3
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 1.9e-187 659.4 439 74.9
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 7.1e-187 657.5 423 74.9
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 9.2e-187 657.1 439 71.5
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 1.0e-185 653.7 439 72.0
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 3.9e-185 651.7 432 72.9
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 3.9e-185 651.7 439 72.0
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 6.6e-185 651.0 432 72.5
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.5e-184 649.8 419 74.0
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 2.5e-184 649.0 439 71.8
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 3.3e-184 648.7 432 72.9
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 3.6e-183 645.2 433 74.4
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 6.2e-183 644.4 436 72.9
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 6.2e-183 644.4 439 72.0
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 8.1e-183 644.0 433 74.4
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 1.1e-182 643.7 439 72.9
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.1e-182 643.7 424 75.0
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 1.4e-182 643.3 409 78.7
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 9.0e-182 640.6 433 73.2
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 9.0e-182 640.6 430 72.3
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 1.2e-181 640.2 438 71.5
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 1.5e-181 639.8 436 72.7
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 4.4e-181 638.3 433 72.3
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 4.4e-181 638.3 436 72.5
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 5.8e-181 637.9 443 72.2
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 7.6e-181 637.5 436 72.5
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 2.9e-180 635.6 436 72.0
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 8.4e-180 634.0 437 71.2
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.4e-179 633.3 425 70.4
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 2.4e-179 632.5 478 68.0
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 2.4e-179 632.5 430 70.9
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 4.2e-179 631.7 429 69.5
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 5.4e-179 631.3 446 70.0
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 7.1e-179 630.9 440 70.9
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 7.1e-179 630.9 430 69.3
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 9.3e-179 630.6 439 70.6
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 1.2e-178 630.2 435 72.4
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 1.6e-178 629.8 436 70.4
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 1.6e-178 629.8 433 72.1
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 1.6e-178 629.8 406 75.9
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.1e-178 629.4 430 69.3
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.1e-178 629.4 501 63.7
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 2.7e-178 629.0 423 70.2
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 3.5e-178 628.6 426 69.2
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 3.5e-178 628.6 433 71.8
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 7.8e-178 627.5 444 71.2
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 3.0e-177 625.5 426 70.2
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 3.9e-177 625.2 437 71.2
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 5.1e-177 624.8 437 71.2
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 1.5e-176 623.2 455 68.4
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 1.5e-176 623.2 425 72.0
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 3.3e-176 622.1 475 65.9
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 4.3e-176 621.7 446 68.6
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 1.6e-175 619.8 423 71.9
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 2.8e-175 619.0 434 70.5
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 2.8e-175 619.0 471 66.7
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 4.8e-175 618.2 439 71.3
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 6.2e-175 617.8 432 68.5
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 6.2e-175 617.8 439 69.2
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 1.4e-174 616.7 403 73.0
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 9.0e-174 614.0 439 70.4
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 1.5e-173 613.2 430 67.7
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 2.6e-173 612.5 438 69.4
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 9.9e-173 610.5 446 68.4
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 9.9e-165 583.9 432 66.9
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 1.6e-162 576.6 442 64.9
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 2.1e-162 576.2 426 69.0
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 8.2e-159 564.3 415 68.7
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 1.4e-158 563.5 444 62.4
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 2.4e-158 562.8 427 67.4
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.0e-156 557.4 382 69.4
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 3.2e-155 552.4 409 68.9
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 3.5e-154 548.9 423 65.7
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 7.9e-154 547.7 342 81.0
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 3.7e-151 538.9 439 62.6
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 3.2e-147 525.8 393 65.1
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 6.3e-143 511.5 417 62.8
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 8.2e-143 511.1 336 76.5
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 2.6e-141 506.1 433 60.5
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 1.0e-137 494.2 368 63.6
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 1.5e-136 490.3 370 65.1
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 8.2e-135 484.6 254 94.5
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 1.4e-134 483.8 364 66.5
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 1.4e-134 483.8 344 69.8
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 1.5e-133 480.3 458 56.6
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 1.7e-132 476.9 412 56.1
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 3.8e-132 475.7 337 70.0
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 1.5e-131 473.8 335 70.4
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 1.0e-129 467.6 326 69.9
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 1.7e-127 460.3 417 55.9
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 4.1e-126 455.7 439 58.3
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 1.6e-125 453.8 419 54.7
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 7.7e-125 451.4 344 66.6
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 2.2e-124 449.9 312 71.2
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 7.7e-117 424.9 409 54.3
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 4.2e-115 419.1 335 63.9
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 7.2e-107 391.7 580 38.8
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 1.0e-105 387.9 291 67.0
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 2.6e-104 383.3 273 66.7
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 9.2e-102 374.8 356 58.1
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 4.5e-101 372.5 379 55.7
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 3.1e-97 359.8 270 63.7
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 5.4e-94 349.0 367 54.2
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 9.2e-94 348.2 283 61.5
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 2.2e-87 327.0 423 43.7
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 1.1e-86 324.7 248 64.9
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.6e-85 320.9 430 41.9
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 1.1e-83 314.7 235 66.4
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 8.9e-81 305.1 152 98.7
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 3.4e-80 303.1 435 41.8
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 4.4e-80 302.8 404 43.6
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.4e-70 271.2 367 45.0
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 1.6e-69 267.7 214 62.1
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 7.8e-69 265.4 464 35.6
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 1.1e-67 261.5 150 82.0
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 4.3e-67 259.6 233 56.2
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 9.0e-65 251.9 148 84.5
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 3.8e-63 246.5 415 37.8
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 2.4e-62 243.8 150 76.0
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 3.2e-62 243.4 147 77.6
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 7.3e-59 232.3 143 75.5
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 3.4e-56 223.4 181 61.9
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 5.4e-54 216.1 416 35.6
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 7.9e-53 212.2 141 70.2
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 1.8e-52 211.1 260 50.8
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 3.3e-51 206.8 118 86.4
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 1.8e-44 184.5 111 78.4
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.5e-35 154.1 92 81.5
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.5e-35 154.1 92 81.5
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 8.2e-34 149.1 128 66.4
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 5.5e-30 136.3 437 27.5
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 4.8e-26 123.2 93 60.2
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 5.9e-24 116.3 95 62.1
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 7.7e-16 89.4 125 47.2
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 3.8e-15 87.0 340 26.8
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 5.0e-15 86.7 108 46.3
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 7.5e-11 72.8 50 70.0
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 3.7e-10 70.5 53 62.3
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 3.1e-09 67.4 71 47.9
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 4.1e-09 67.0 43 65.1
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 1.2e-08 65.5 69 46.4
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 1.6e-08 65.1 63 50.8
SHI41529 Sapria himalayana HOM05D004598 ORTHO05D005550 1.5e-06 58.5 71 45.1


User provided reference genes

Program Settings