Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 0.0e+00 1179.9 593 100.0
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 0.0e+00 1163.7 611 96.4
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 2.2e-268 928.7 616 78.1
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 4.1e-262 907.9 610 77.7
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 1.3e-239 833.2 576 74.5
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 1.8e-238 829.3 612 70.9
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 3.5e-237 825.1 609 71.3
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 1.3e-231 806.6 610 68.0
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 1.7e-231 806.2 610 69.2
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 2.4e-230 802.4 614 68.2
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 1.6e-229 799.7 582 71.8
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 3.5e-229 798.5 608 67.8
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 3.2e-227 792.0 609 67.2
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 4.0e-225 785.0 613 67.9
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 4.0e-225 785.0 618 65.7
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 1.6e-221 773.1 611 65.8
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 5.9e-221 771.2 617 65.6
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 5.9e-221 771.2 613 67.5
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 7.8e-221 770.8 585 68.9
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 1.7e-220 769.6 618 62.9
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 1.7e-220 769.6 618 64.4
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 2.3e-220 769.2 618 66.2
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 2.9e-220 768.8 619 65.6
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 6.6e-220 767.7 614 63.7
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 4.3e-219 765.0 575 69.7
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 2.8e-218 762.3 613 63.9
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 1.4e-217 760.0 609 64.0
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 5.2e-217 758.1 634 64.7
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 1.5e-216 756.5 576 68.9
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 2.6e-216 755.7 615 66.0
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 2.6e-216 755.7 609 64.4
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 4.4e-216 755.0 615 66.0
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 7.5e-216 754.2 609 65.8
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 1.3e-215 753.4 606 65.0
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 4.9e-215 751.5 609 65.4
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 1.1e-214 750.4 527 73.1
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 1.1e-214 750.4 609 65.0
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 4.1e-214 748.4 606 66.5
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 7.8e-213 744.2 605 66.4
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 3.0e-212 742.3 613 65.4
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 5.0e-212 741.5 605 64.1
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 6.6e-212 741.1 602 65.9
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 1.1e-211 740.3 601 63.7
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 1.9e-211 739.6 610 63.8
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 2.5e-211 739.2 593 68.6
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 5.6e-211 738.0 548 72.4
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 2.8e-210 735.7 610 63.9
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 8.0e-210 734.2 587 66.8
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 1.8e-209 733.0 610 63.0
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 4.0e-209 731.9 614 65.5
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 5.2e-209 731.5 612 65.4
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 6.8e-209 731.1 611 63.3
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 6.8e-209 731.1 608 64.6
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 6.8e-209 731.1 612 65.0
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 7.5e-208 727.6 606 61.9
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 1.3e-207 726.9 593 65.9
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 3.7e-207 725.3 618 66.5
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 3.7e-207 725.3 604 61.9
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 6.4e-207 724.5 610 63.3
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 1.1e-206 723.8 576 65.5
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 1.4e-206 723.4 568 66.2
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 9.2e-206 720.7 615 62.0
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 9.2e-206 720.7 612 64.7
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 1.3e-204 716.8 607 62.8
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.3e-204 716.1 611 61.5
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 2.3e-204 716.1 580 64.1
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 1.9e-203 713.0 680 58.5
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 3.3e-203 712.2 606 61.6
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 2.3e-201 706.1 581 64.9
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 2.3e-201 706.1 615 60.8
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 6.8e-201 704.5 619 61.2
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 8.9e-201 704.1 602 62.1
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 2.6e-200 702.6 588 62.1
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 6.4e-199 698.0 590 62.0
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 8.3e-199 697.6 592 62.3
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 1.1e-198 697.2 615 60.3
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 1.9e-198 696.4 600 61.2
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 7.1e-198 694.5 618 60.2
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 3.5e-197 692.2 562 64.6
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 2.3e-196 689.5 599 63.6
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 3.9e-196 688.7 595 60.5
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 5.1e-196 688.3 613 61.2
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 2.5e-195 686.0 637 60.3
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 5.6e-195 684.9 590 61.0
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 1.2e-194 683.7 617 60.3
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 2.8e-194 682.6 617 59.8
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 4.7e-194 681.8 614 59.3
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 6.8e-193 677.9 613 60.2
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 8.9e-193 677.6 613 60.0
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 2.0e-192 676.4 613 59.9
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 4.4e-192 675.2 586 60.8
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 5.8e-192 674.9 566 62.2
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 2.5e-187 659.4 603 58.7
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 1.5e-184 650.2 630 56.0
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 2.9e-183 646.0 609 59.4
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 1.3e-178 630.6 603 55.1
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 8.1e-178 627.9 544 63.6
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 1.8e-177 626.7 597 55.9
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 8.4e-175 617.8 583 55.4
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 8.4e-175 617.8 584 56.7
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 3.3e-171 605.9 442 70.1
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 1.4e-169 600.5 601 55.1
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 8.4e-167 591.3 568 57.7
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 2.1e-165 586.6 443 68.4
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 1.8e-164 583.6 565 56.3
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 3.2e-158 562.8 617 51.9
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 4.2e-158 562.4 616 51.6
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 1.4e-150 537.3 541 54.5
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 1.1e-147 527.7 344 77.3
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.5e-147 526.6 598 49.2
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 2.7e-141 506.5 479 57.4
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 2.0e-112 410.6 591 43.7
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 5.6e-102 375.9 612 36.8
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 6.4e-98 362.5 522 42.9
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 2.8e-93 347.1 579 37.7
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 8.0e-93 345.5 565 38.6
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 8.3e-90 335.5 352 50.6
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 2.5e-86 323.9 237 67.1
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.4e-84 318.2 375 46.9
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 5.6e-78 296.2 389 44.2
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 2.4e-73 280.8 233 61.4
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 8.7e-71 272.3 242 57.9
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.4e-68 264.2 337 44.2
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 2.2e-66 257.7 185 71.4
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 3.0e-55 220.7 443 31.6
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 1.8e-47 194.9 214 50.9
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 1.2e-35 155.6 204 46.6
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 5.1e-31 140.2 147 46.9
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 5.0e-26 123.6 247 36.4
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 1.9e-25 121.7 84 73.8
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 7.2e-25 119.8 191 38.7
A05p41020 Brassica napus HOM05D005553 ORTHO05D006866 3.7e-21 107.5 224 37.9
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 5.9e-19 100.1 420 24.3
Cfa026900 Carpinus fangiana HOM05D005553 ORTHO05D006866 5.0e-18 97.1 318 27.7
TAR365G0595 Trochodendron aralioides HOM05D005553 ORTHO05D006866 5.0e-18 97.1 100 61.0
TPR.G39542 Trifolium pratense HOM05D005553 ORTHO05D006866 4.7e-16 90.5 47 83.0
MCO09G019 Micromonas commoda HOM05D005553 ORTHO05D006866 3.7e-13 80.9 149 34.9


User provided reference genes

Program Settings