Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.3e-38 162.5 77 100.0
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.3e-24 115.2 64 81.2
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 2.0e-20 102.1 62 72.6
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 2.6e-20 101.7 63 73.0
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 4.5e-20 100.9 64 73.4
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 5.9e-20 100.5 62 71.0
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 2.9e-19 98.2 66 68.2
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 1.1e-18 96.3 64 71.9
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 3.2e-18 94.7 61 72.1
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 5.5e-18 94.0 64 68.8
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 9.3e-18 93.2 72 66.7
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 1.2e-17 92.8 63 71.4
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 1.6e-17 92.4 64 67.2
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 2.1e-17 92.0 64 70.3
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 2.1e-17 92.0 66 66.7
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 2.1e-17 92.0 63 68.3
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 6.1e-17 90.5 61 67.2
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 6.1e-17 90.5 61 67.2
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 6.1e-17 90.5 61 67.2
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 6.1e-17 90.5 61 72.1
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 6.1e-17 90.5 62 69.4
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 1.0e-16 89.7 64 67.2
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 1.3e-16 89.4 61 67.2
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 1.3e-16 89.4 61 67.2
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 1.8e-16 89.0 63 63.5
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 1.8e-16 89.0 63 63.5
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.8e-16 89.0 61 65.6
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 2.3e-16 88.6 67 67.2
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 2.3e-16 88.6 62 69.4
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 2.3e-16 88.6 66 63.6
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 3.9e-16 87.8 62 66.1
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 5.1e-16 87.4 64 67.2
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 5.1e-16 87.4 61 65.6
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 5.1e-16 87.4 63 66.7
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 8.7e-16 86.7 62 69.4
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 8.7e-16 86.7 65 67.7
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 8.7e-16 86.7 61 67.2
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 1.1e-15 86.3 62 64.5
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.1e-15 86.3 65 63.1
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 1.1e-15 86.3 62 66.1
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 1.1e-15 86.3 62 66.1
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 1.1e-15 86.3 61 68.9
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 1.5e-15 85.9 65 60.0
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.5e-15 85.9 61 67.2
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.5e-15 85.9 64 59.4
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 1.9e-15 85.5 64 67.2
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 1.9e-15 85.5 62 64.5
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 1.9e-15 85.5 64 62.5
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 2.5e-15 85.1 62 67.7
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 2.5e-15 85.1 61 68.9
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 2.5e-15 85.1 61 70.5
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 2.5e-15 85.1 62 64.5
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 2.5e-15 85.1 64 64.1
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 3.3e-15 84.7 61 68.9
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 3.3e-15 84.7 62 64.5
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 3.3e-15 84.7 64 62.5
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 3.3e-15 84.7 64 62.5
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 4.3e-15 84.3 62 66.1
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 4.3e-15 84.3 64 64.1
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 5.7e-15 84.0 61 68.9
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 5.7e-15 84.0 64 62.5
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 7.4e-15 83.6 61 62.3
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 7.4e-15 83.6 61 62.3
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 7.4e-15 83.6 66 59.1
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 9.7e-15 83.2 62 66.1
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 9.7e-15 83.2 62 62.9
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 9.7e-15 83.2 64 64.1
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 9.7e-15 83.2 68 60.3
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 9.7e-15 83.2 64 60.9
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 1.3e-14 82.8 62 62.9
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.6e-14 82.4 59 66.1
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.6e-14 82.4 61 62.3
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.6e-14 82.4 61 62.3
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.6e-14 82.4 61 62.3
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 1.6e-14 82.4 61 63.9
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 2.2e-14 82.0 63 66.7
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 2.2e-14 82.0 65 67.7
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 2.2e-14 82.0 61 60.7
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 2.2e-14 82.0 61 60.7
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 2.2e-14 82.0 61 59.0
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 2.8e-14 81.6 61 62.3
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 2.8e-14 81.6 61 59.0
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 2.8e-14 81.6 61 60.7
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 2.8e-14 81.6 61 60.7
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 2.8e-14 81.6 61 60.7
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 2.8e-14 81.6 74 54.1
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 3.7e-14 81.3 61 60.7
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 6.3e-14 80.5 61 60.7
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 6.3e-14 80.5 64 59.4
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 6.3e-14 80.5 62 62.9
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 6.3e-14 80.5 62 62.9
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 6.3e-14 80.5 61 60.7
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 1.1e-13 79.7 61 60.7
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 1.1e-13 79.7 64 57.8
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 1.1e-13 79.7 64 57.8
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 1.1e-13 79.7 62 62.9
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.1e-13 79.7 61 62.3
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.1e-13 79.7 61 62.3
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 1.4e-13 79.3 65 56.9
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.4e-13 79.3 61 62.3
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 1.4e-13 79.3 63 58.7
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 1.8e-13 79.0 65 56.9
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 1.8e-13 79.0 46 73.9
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 1.8e-13 79.0 64 59.4
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 1.8e-13 79.0 65 61.5
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 2.4e-13 78.6 64 57.8
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 3.1e-13 78.2 71 60.6
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 3.1e-13 78.2 61 60.7
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 3.1e-13 78.2 64 57.8
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 3.1e-13 78.2 64 57.8
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 3.1e-13 78.2 64 57.8
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 3.1e-13 78.2 46 73.9
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 3.1e-13 78.2 64 59.4
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 4.1e-13 77.8 66 57.6
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 4.1e-13 77.8 70 54.3
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 4.1e-13 77.8 65 56.9
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 4.1e-13 77.8 61 62.3
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 5.3e-13 77.4 64 59.4
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 5.3e-13 77.4 64 60.9
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 5.3e-13 77.4 61 60.7
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 5.3e-13 77.4 64 59.4
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 6.9e-13 77.0 47 68.1
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 6.9e-13 77.0 47 68.1
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 6.9e-13 77.0 47 68.1
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 9.1e-13 76.6 64 57.8
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 9.1e-13 76.6 64 57.8
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 9.1e-13 76.6 62 59.7
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 9.1e-13 76.6 61 55.7
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 1.2e-12 76.3 64 62.5
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.5e-12 75.9 61 59.0
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 1.5e-12 75.9 60 55.0
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 2.0e-12 75.5 61 57.4
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 1.0e-11 73.2 64 56.2
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 1.3e-11 72.8 47 70.2
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 2.2e-11 72.0 64 54.7
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 1.6e-09 65.9 52 61.5
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 7.9e-09 63.5 36 75.0
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 2.3e-08 62.0 36 75.0
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 3.0e-08 61.6 64 50.0
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 3.0e-08 61.6 38 71.1
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 1.1e-07 59.7 61 50.8
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 5.7e-07 57.4 41 56.1


User provided reference genes

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