Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.7e-219 765.8 411 100.0
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 2.2e-214 748.8 422 90.5
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 1.9e-173 612.8 423 73.8
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.3e-171 606.7 425 75.5
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 2.5e-170 602.4 426 73.0
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 4.3e-170 601.7 426 73.5
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 5.3e-168 594.7 415 75.2
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 1.3e-166 590.1 425 71.8
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 1.8e-160 569.7 424 70.5
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 3.4e-159 565.5 424 68.6
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 1.7e-158 563.1 425 68.9
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 8.4e-158 560.8 420 69.3
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 1.4e-157 560.1 423 68.8
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 1.9e-157 559.7 419 69.9
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 5.5e-157 558.1 425 68.7
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 7.1e-157 557.8 441 66.7
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 2.7e-156 555.8 425 68.7
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 1.0e-155 553.9 426 67.6
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 1.3e-155 553.5 424 67.5
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.8e-155 553.1 419 68.5
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.8e-155 553.1 419 68.5
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 5.1e-155 551.6 440 67.5
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 3.3e-154 548.9 422 67.5
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.7e-154 548.1 419 68.0
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 5.7e-154 548.1 426 67.1
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 7.4e-154 547.7 426 67.4
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 2.8e-153 545.8 420 66.7
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 3.7e-153 545.4 426 66.2
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 3.7e-153 545.4 424 66.7
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 6.3e-153 544.7 427 65.6
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 1.8e-152 543.1 424 67.5
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 9.0e-152 540.8 425 65.4
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 1.5e-151 540.0 424 67.0
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 1.5e-151 540.0 426 65.5
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 2.0e-151 539.7 416 68.3
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 2.2e-150 536.2 424 67.0
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 2.9e-150 535.8 415 66.5
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 5.0e-150 535.0 423 66.9
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 1.1e-149 533.9 423 66.7
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 3.2e-149 532.3 427 66.5
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 4.2e-149 531.9 423 66.7
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 9.4e-149 530.8 419 66.6
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 1.4e-147 526.9 440 64.1
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.4e-147 526.9 427 65.8
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 5.1e-147 525.0 411 66.9
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 5.1e-147 525.0 424 65.1
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 8.8e-147 524.2 422 63.7
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.0e-146 523.1 441 64.4
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 3.3e-146 522.3 425 65.2
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 3.3e-146 522.3 425 65.4
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 5.7e-146 521.5 426 63.8
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.7e-145 520.0 421 65.8
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 1.7e-145 520.0 426 65.3
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 8.2e-145 517.7 471 59.2
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 8.2e-145 517.7 430 63.0
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 1.1e-144 517.3 415 64.6
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.1e-144 517.3 424 65.3
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 3.1e-144 515.8 451 61.4
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.5e-143 513.5 424 64.9
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 3.4e-143 512.3 422 63.0
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 3.4e-143 512.3 422 63.3
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 2.2e-142 509.6 429 62.2
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 3.8e-142 508.8 425 65.2
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 8.5e-142 507.7 427 63.2
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 3.2e-141 505.8 451 60.8
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 1.8e-139 500.0 422 61.4
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 6.3e-137 491.5 425 60.5
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 1.4e-136 490.3 422 60.0
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 1.4e-136 490.3 428 61.2
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 2.4e-136 489.6 422 59.7
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 5.3e-136 488.4 425 63.3
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 7.0e-136 488.0 422 59.5
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 7.0e-136 488.0 428 61.7
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 9.1e-136 487.6 419 62.8
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 2.6e-135 486.1 419 62.1
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 4.5e-135 485.3 422 59.7
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 5.9e-135 485.0 426 59.4
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.9e-133 479.9 411 62.8
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 2.5e-133 479.6 419 59.7
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.2e-133 478.8 384 66.4
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 4.2e-133 478.8 419 61.3
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 4.7e-132 475.3 415 59.5
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 6.1e-132 474.9 426 58.9
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 1.0e-131 474.2 426 58.7
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 3.0e-131 472.6 424 60.6
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 2.2e-129 466.5 433 59.1
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 1.1e-128 464.2 410 58.8
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 1.7e-126 456.8 430 58.8
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 1.7e-126 456.8 404 62.1
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 2.9e-126 456.1 458 56.1
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 4.2e-125 452.2 413 58.4
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 1.0e-123 447.6 422 57.8
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 5.2e-123 445.3 420 57.1
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 3.5e-119 432.6 438 54.1
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.3e-118 430.6 442 56.3
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 2.9e-118 429.5 415 56.1
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.1e-117 427.6 415 55.9
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 2.5e-117 426.4 425 55.5
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 6.1e-116 421.8 415 57.3
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 4.0e-115 419.1 414 54.3
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 1.2e-114 417.5 336 66.4
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 1.4e-112 410.6 425 55.5
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 9.1e-112 407.9 426 54.9
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 1.2e-111 407.5 419 53.2
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 2.9e-110 402.9 464 52.4
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 1.4e-107 394.0 298 66.4
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 5.7e-106 388.7 422 50.7
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 1.0e-99 367.9 285 66.7
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 2.9e-97 359.8 446 48.4
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 7.0e-96 355.1 336 56.5
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 3.7e-89 332.8 333 54.4
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 7.8e-87 325.1 414 45.2
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 1.0e-86 324.7 429 44.5
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 2.1e-84 317.0 226 68.1
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 8.4e-81 305.1 417 42.4
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 3.1e-75 286.6 405 42.0
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 6.0e-71 272.3 452 38.7
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 2.9e-65 253.4 243 53.9
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 1.4e-56 224.6 155 69.0
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 5.6e-53 212.6 376 41.0
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 7.4e-53 212.2 143 79.7
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 2.6e-50 203.8 390 39.5
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 7.7e-34 149.1 139 58.3
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.2e-33 147.5 139 57.6
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.8e-33 146.7 139 58.3
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.7e-31 140.6 139 56.1
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 3.7e-28 130.2 125 51.2
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 3.7e-28 130.2 99 62.6
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 1.3e-25 121.7 116 62.1
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 2.5e-24 117.5 79 68.4
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 3.2e-24 117.1 96 67.7
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 8.8e-22 109.0 96 63.5
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 9.1e-19 99.0 86 65.1
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 2.5e-16 90.9 56 76.8
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 4.2e-16 90.1 94 46.8
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.4e-14 85.1 66 65.2
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 7.5e-13 79.3 71 56.3
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 2.7e-10 70.9 73 54.8
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 4.5e-10 70.1 252 26.2
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 1.7e-09 68.2 55 58.2
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 9.4e-08 62.4 47 63.8
SEGI_09875 Sequoiadendron giganteum HOM05D001915 ORTHO05D385338 4.0e-06 57.0 44 59.1


User provided reference genes

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