Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038912 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 4.9e-79 297.7 150 100.0
CSS0042911 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 2.7e-61 238.8 183 73.2
CSS0015957 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 1.5e-59 233.0 146 83.6
CSS0014057 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 4.7e-58 228.0 146 81.5
CSS0025945 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 2.0e-56 222.6 146 80.1
CSS0002014 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 4.9e-55 218.0 184 67.4
CSS0000627 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 1.8e-49 199.5 129 81.4
Rhsim13G0065900 Rhododendron simsii HOM05D002034 ORTHO05D004251 1.5e-40 169.9 146 63.0
Dinv28678 Davidia involucrata HOM05D002034 ORTHO05D004251 1.4e-38 163.3 132 65.9
vmacro02934 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 9.3e-38 160.6 146 61.0
Haze_24388 Corylus avellana HOM05D002034 ORTHO05D004251 4.3e-35 151.8 106 75.5
GSVIVG01024678001 Vitis vinifera HOM05D002034 ORTHO05D004251 9.6e-35 150.6 136 61.0
Prupe.6G051700 Prunus persica HOM05D002034 ORTHO05D004251 1.6e-34 149.8 130 62.3
TAR369G0522 Trochodendron aralioides HOM05D002034 ORTHO05D004251 4.8e-34 148.3 118 66.9
Hma1.2p1_0841F.1_g226850 Hydrangea macrophylla HOM05D002034 ORTHO05D004251 1.1e-33 147.1 137 58.4
RcHm_v2.0_Chr5g0070931 Rosa chinensis HOM05D002034 ORTHO05D004251 1.4e-33 146.7 143 55.2
FAN16G1479 Fragaria x ananassa HOM05D002034 ORTHO05D004251 1.8e-33 146.4 112 66.1
FvH4_3g39400 Fragaria vesca HOM05D002034 ORTHO05D004251 4.0e-33 145.2 112 65.2
FAN11G3897 Fragaria x ananassa HOM05D002034 ORTHO05D004251 4.0e-33 145.2 112 65.2
FAN25G3060 Fragaria x ananassa HOM05D002034 ORTHO05D004251 6.9e-33 144.4 113 64.6
Lj1C128T10 Lonicera japonica HOM05D002034 ORTHO05D004251 5.8e-32 141.4 114 64.9
CAN.G1095.17 Capsicum annuum HOM05D002034 ORTHO05D004251 7.6e-32 141.0 129 60.5
QL01p039781 Quercus lobata HOM05D002034 ORTHO05D004251 7.6e-32 141.0 157 53.5
VMungo0540G1016 Vigna mungo HOM05D002034 ORTHO05D004251 9.9e-32 140.6 119 62.2
Lalb_Chr04g0252081 Lupinus albus HOM05D002034 ORTHO05D004251 4.9e-31 138.3 134 53.7
Cpa.g.sc2.385 Carica papaya HOM05D002034 ORTHO05D004251 6.4e-31 137.9 138 58.7
Nn2g10970 Nelumbo nucifera HOM05D002034 ORTHO05D004251 6.4e-31 137.9 136 52.9
TWI31G1212 Tripterygium wilfordii HOM05D002034 ORTHO05D004251 6.4e-31 137.9 109 66.1
Phvul.006G072400 Phaseolus vulgaris HOM05D002034 ORTHO05D004251 8.4e-31 137.5 119 60.5
Solyc06g082200.4 Solanum lycopersicum HOM05D002034 ORTHO05D004251 8.4e-31 137.5 131 61.8
Sopen06g033580 Solanum pennellii HOM05D002034 ORTHO05D004251 8.4e-31 137.5 131 61.8
Potri.009G076000 Populus trichocarpa HOM05D002034 ORTHO05D004251 1.9e-30 136.3 137 59.1
Aqoxy2G00822 Aquilegia oxysepala HOM05D002034 ORTHO05D004251 2.4e-30 136.0 106 67.0
Thecc.09G354800 Theobroma cacao HOM05D002034 ORTHO05D004251 2.4e-30 136.0 106 69.8
Glyma.18G058700 Glycine max HOM05D002034 ORTHO05D004251 3.2e-30 135.6 122 57.4
CsaV3_1G036460 Cucumis sativus L. HOM05D002034 ORTHO05D004251 4.2e-30 135.2 146 52.1
Duzib168G1938 Durio zibethinus HOM05D002034 ORTHO05D004251 4.2e-30 135.2 122 63.9
FAN21G1045 Fragaria x ananassa HOM05D002034 ORTHO05D004251 5.5e-30 134.8 112 61.6
Lalb_Chr15g0083131 Lupinus albus HOM05D002034 ORTHO05D004251 5.5e-30 134.8 153 51.6
TAR357G0005 Trochodendron aralioides HOM05D002034 ORTHO05D004251 5.5e-30 134.8 121 60.3
PGSC0003DMG400030372 Solanum tuberosum HOM05D002034 ORTHO05D004251 1.2e-29 133.7 105 68.6
Glyma.11G165900 Glycine max HOM05D002034 ORTHO05D004251 2.7e-29 132.5 127 55.1
Lj6g0001278 Lotus japonicus HOM05D002034 ORTHO05D004251 2.7e-29 132.5 103 65.0
TPR.G32915 Trifolium pratense HOM05D002034 ORTHO05D004251 2.7e-29 132.5 109 61.5
Ca_14990_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 4.6e-29 131.7 102 63.7
Ca_30101_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 4.6e-29 131.7 102 63.7
COL.COLO4_11121 Corchorus olitorius HOM05D002034 ORTHO05D004251 4.6e-29 131.7 106 69.8
Duzib150G0116 Durio zibethinus HOM05D002034 ORTHO05D004251 4.6e-29 131.7 107 67.3
Psat5g155480 Pisum sativum HOM05D002034 ORTHO05D004251 4.6e-29 131.7 123 56.1
Sed0002046 Sechium edule HOM05D002034 ORTHO05D004251 6.0e-29 131.3 100 68.0
Gohir.A13G234000 Gossypium hirsutum HOM05D002034 ORTHO05D004251 7.9e-29 131.0 107 67.3
Medtr3g465600 Medicago truncatula HOM05D002034 ORTHO05D004251 1.3e-28 130.2 118 56.8
ECA247G1661 Erigeron canadensis HOM05D002034 ORTHO05D004251 3.0e-28 129.0 123 56.9
Gorai.013G270500 Gossypium raimondii HOM05D002034 ORTHO05D004251 3.0e-28 129.0 107 66.4
CANSAT54G3012 Cannabis sativa HOM05D002034 ORTHO05D004251 3.9e-28 128.6 102 63.7
Gohir.D13G239600 Gossypium hirsutum HOM05D002034 ORTHO05D004251 3.9e-28 128.6 106 67.0
MD11G1065500 Malus domestica HOM05D002034 ORTHO05D004251 3.9e-28 128.6 176 46.6
Peaxi162Scf00390g00823 Petunia axillaris HOM05D002034 ORTHO05D004251 5.1e-28 128.3 89 76.4
arahy.Tifrunner.gnm1.ann1.H18R60 Arachis hypogaea HOM05D002034 ORTHO05D004251 1.1e-27 127.1 87 74.7
arahy.Tifrunner.gnm1.ann1.Z7E5WK Arachis hypogaea HOM05D002034 ORTHO05D004251 1.1e-27 127.1 87 74.7
Cc01_g14670 Coffea canephora HOM05D002034 ORTHO05D004251 1.9e-27 126.3 136 55.1
Eucgr.B02225 Eucalyptus grandis HOM05D002034 ORTHO05D004251 2.5e-27 125.9 140 55.0
Manes.02G215950 Manihot esculenta HOM05D002034 ORTHO05D004251 2.5e-27 125.9 142 51.4
Gorai.003G148700 Gossypium raimondii HOM05D002034 ORTHO05D004251 3.3e-27 125.6 107 65.4
Gohir.A03G026800 Gossypium hirsutum HOM05D002034 ORTHO05D004251 7.4e-27 124.4 107 65.4
DCAR_018219 Daucus carota HOM05D002034 ORTHO05D004251 9.6e-27 124.0 113 61.9
arahy.Tifrunner.gnm1.ann1.RZ6BDN Arachis hypogaea HOM05D002034 ORTHO05D004251 1.3e-26 123.6 135 50.4
BraA10t43651Z Brassica rapa HOM05D002034 ORTHO05D004251 1.6e-26 123.2 145 53.1
Aa31LG11G290 Aethionema arabicum HOM05D002034 ORTHO05D004251 2.8e-26 122.5 112 61.6
PGR102G2830 Punica granatum HOM05D002034 ORTHO05D004251 2.8e-26 122.5 122 56.6
Gohir.D03G141700 Gossypium hirsutum HOM05D002034 ORTHO05D004251 4.8e-26 121.7 107 64.5
Lsat_1_v5_gn_9_18521 Lactuca sativa HOM05D002034 ORTHO05D004251 4.8e-26 121.7 102 63.7
PSO339G3538 Papaver somniferum HOM05D002034 ORTHO05D004251 4.8e-26 121.7 84 75.0
arahy.Tifrunner.gnm1.ann1.WA30K5 Arachis hypogaea HOM05D002034 ORTHO05D004251 8.2e-26 120.9 108 61.1
THA.LOC104799388 Tarenaya hassleriana HOM05D002034 ORTHO05D004251 8.2e-26 120.9 113 60.2
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 1.1e-25 120.6 145 52.4
C09p50470 Brassica napus HOM05D002034 ORTHO05D004251 1.1e-25 120.6 145 52.4
BolC9t57903H Brassica oleracea HOM05D002034 ORTHO05D004251 1.1e-25 120.6 145 52.4
ClCG03G000460 Citrullus lanatus HOM05D002034 ORTHO05D004251 1.1e-25 120.6 163 46.0
AT5G58510 Arabidopsis thaliana HOM05D002034 ORTHO05D004251 1.4e-25 120.2 113 61.1
Carub.0008s1910 Capsella rubella HOM05D002034 ORTHO05D004251 1.4e-25 120.2 113 61.1
Cfa011748 Carpinus fangiana HOM05D002034 ORTHO05D004251 1.4e-25 120.2 88 72.7
AL8G34750 Arabidopsis lyrata HOM05D002034 ORTHO05D004251 1.8e-25 119.8 113 61.1
Sp6g20200 Schrenkiella parvula HOM05D002034 ORTHO05D004251 1.8e-25 119.8 116 58.6
MSTRG.8115 Avicennia marina HOM05D002034 ORTHO05D004251 4.0e-25 118.6 130 54.6
BcaB08g36187 Brassica carinata HOM05D002034 ORTHO05D004251 4.0e-25 118.6 114 61.4
BolC3t13874H Brassica oleracea HOM05D002034 ORTHO05D004251 5.3e-25 118.2 113 61.1
Ah.15g096250 Amaranthus hybridus HOM05D002034 ORTHO05D004251 6.9e-25 117.9 92 69.6
PSO801G0069 Papaver somniferum HOM05D002034 ORTHO05D004251 9.0e-25 117.5 81 75.3
HanXRQChr08g0229181 Helianthus annuus HOM05D002034 ORTHO05D004251 1.5e-24 116.7 81 74.1
BcaB01g04520 Brassica carinata HOM05D002034 ORTHO05D004251 2.6e-24 115.9 147 50.3
Thhalv10012586m.g Eutrema salsugineum HOM05D002034 ORTHO05D004251 2.6e-24 115.9 113 59.3
Sabra09G0057900 Salix brachista HOM05D002034 ORTHO05D004251 2.6e-24 115.9 189 43.4
SGA_v2.0_scaffold62G21324 Striga asiatica HOM05D002034 ORTHO05D004251 4.5e-24 115.2 81 72.8
EL10Ac7g15893 Beta vulgaris HOM05D002034 ORTHO05D004251 5.8e-24 114.8 85 74.1
CDE08G0674 Ceratophyllum demersum HOM05D002034 ORTHO05D004251 5.8e-24 114.8 108 54.6
MELO3C020522.2 Cucumis melo HOM05D002034 ORTHO05D004251 7.6e-24 114.4 191 39.3
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 1.0e-23 114.0 113 59.3
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 1.0e-23 114.0 113 59.3
Zm00001eb396860 Zea mays HOM05D002034 ORTHO05D004251 1.7e-23 113.2 82 72.0
Sc12g0000270 Simmondsia chinensis HOM05D002034 ORTHO05D004251 1.1e-22 110.5 85 69.4
Os03g0295700 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D004251 1.4e-22 110.2 82 69.5
ATR0174G009 Amborella trichopoda HOM05D002034 ORTHO05D004251 5.5e-22 108.2 120 54.2
Ciclev10027766m.g Citrus clementina HOM05D002034 ORTHO05D004251 9.3e-22 107.5 141 51.8
Migut.F01663 Erythranthe guttata HOM05D002034 ORTHO05D004251 1.6e-21 106.7 81 70.4
SEGI_18638 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 7.9e-21 104.4 89 62.9
Nitab4.5_0001115g0080 Nicotiana tabacum HOM05D002034 ORTHO05D004251 5.1e-20 101.7 116 53.4
MSTRG.9115 Avicennia marina HOM05D002034 ORTHO05D004251 1.1e-19 100.5 81 67.9
Nitab4.5_0006148g0070 Nicotiana tabacum HOM05D002034 ORTHO05D004251 5.7e-19 98.2 89 61.8
Nitab4.5_0004155g0040 Nicotiana tabacum HOM05D002034 ORTHO05D004251 1.6e-18 96.7 89 61.8
Atru.chr3.4154 Acer truncatum HOM05D002034 ORTHO05D004251 9.0e-17 90.9 86 57.0
SHI19193 Sapria himalayana HOM05D002034 ORTHO05D004251 2.6e-16 89.4 116 52.6
unitig_736.g22533 Utricularia gibba HOM05D002034 ORTHO05D004251 2.6e-16 89.4 113 48.7
Actinidia38392 Actinidia chinensis HOM05D002034 ORTHO05D004251 1.0e-15 87.4 62 67.7
Peaxi162Scf00808g00111 Petunia axillaris HOM05D002034 ORTHO05D004251 1.4e-14 83.6 70 62.9
Mapoly0006s0080 Marchantia polymorpha HOM05D002034 ORTHO05D004251 2.5e-14 82.8 111 47.7
Potri.001G280832 Populus trichocarpa HOM05D002034 ORTHO05D004251 9.3e-14 80.9 105 46.7
SMO141G0130 Selaginella moellendorffii HOM05D002034 ORTHO05D004251 1.2e-13 80.5 106 46.2
AagrBONN_evm.TU.Sc2ySwM_228.2653 Anthoceros agrestis HOM05D002034 ORTHO05D004251 1.6e-13 80.1 84 54.8
Pp3c22_21020 Physcomitrium patens HOM05D002034 ORTHO05D004251 2.1e-13 79.7 113 42.5
AUR62009695 Chenopodium quinoa HOM05D002034 ORTHO05D004251 1.0e-12 77.4 162 37.0
Actinidia23213 Actinidia chinensis HOM05D002034 ORTHO05D004251 5.1e-12 75.1 76 56.6
Nitab4.5_0001469g0010 Nicotiana tabacum HOM05D002034 ORTHO05D004251 5.7e-11 71.6 79 55.7
AUR62036251 Chenopodium quinoa HOM05D002034 ORTHO05D004251 3.7e-10 68.9 54 66.7
AUR62036252 Chenopodium quinoa HOM05D002034 ORTHO05D004251 3.7e-10 68.9 54 66.7
Hund18961 Selenicereus undatus HOM05D002034 ORTHO05D004251 3.7e-10 68.9 54 64.8
HPP92_012001 Vanilla planifolia HOM05D002034 ORTHO05D004251 2.4e-09 66.2 56 58.9
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 5.3e-09 65.1 71 49.3
Actinidia14799 Actinidia chinensis HOM05D001100 ORTHO05D056588 1.2e-08 63.9 45 68.9
SEGI_15036 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 1.2e-08 63.9 54 59.3
CBR_g32390 Chara braunii HOM05D002034 ORTHO05D004251 1.3e-07 60.5 91 44.0
CAN.G337.77 Capsicum annuum HOM05D001434 ORTHO05D004586 5.5e-06 55.1 149 31.5
PGSC0003DMG400022311 Solanum tuberosum HOM05D001434 ORTHO05D004586 5.5e-06 55.1 149 31.5
Nitab4.5_0000328g0030 Nicotiana tabacum HOM05D001434 ORTHO05D004586 9.4e-06 54.3 104 37.5
Nitab4.5_0002287g0060 Nicotiana tabacum HOM05D001434 ORTHO05D004586 9.4e-06 54.3 149 32.9


User provided reference genes

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