Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038887 Camellia sinensis var. sinensis HOM05D007092 ORTHO05D008947 2.8e-196 688.3 324 100.0
Dinv37796 Davidia involucrata HOM05D007092 ORTHO05D008947 4.3e-133 478.4 309 73.8
Actinidia21869 Actinidia chinensis HOM05D007092 ORTHO05D008947 1.2e-130 470.3 320 73.4
Hma1.2p1_1104F.1_g257360 Hydrangea macrophylla HOM05D007092 ORTHO05D008947 8.2e-124 447.6 307 69.7
GSVIVG01016136001 Vitis vinifera HOM05D007092 ORTHO05D008947 3.5e-122 442.2 302 69.5
QL05p083231 Quercus lobata HOM05D007092 ORTHO05D008947 1.3e-116 423.7 310 67.1
Oeu049655.1 Olea europaea HOM05D007092 ORTHO05D008947 2.9e-113 412.5 284 67.6
RcHm_v2.0_Chr2g0150121 Rosa chinensis HOM05D007092 ORTHO05D008947 3.2e-112 409.1 310 64.5
MD09G1158700 Malus domestica HOM05D007092 ORTHO05D008947 2.7e-111 406.0 307 64.5
Prupe.3G167100 Prunus persica HOM05D007092 ORTHO05D008947 1.0e-110 404.1 333 60.7
Eucgr.F04011 Eucalyptus grandis HOM05D007092 ORTHO05D008947 4.0e-110 402.1 313 64.2
FvH4_6g37290 Fragaria vesca HOM05D007092 ORTHO05D008947 2.6e-109 399.4 311 62.4
PGR102G2093 Punica granatum HOM05D007092 ORTHO05D008947 4.4e-109 398.7 248 71.0
Medtr4g006030 Medicago truncatula HOM05D007092 ORTHO05D008947 5.7e-109 398.3 309 63.8
Thecc.06G015800 Theobroma cacao HOM05D007092 ORTHO05D008947 7.5e-109 397.9 270 68.1
CANSAT01G0482 Cannabis sativa HOM05D007092 ORTHO05D008947 6.3e-108 394.8 258 69.4
Phvul.008G255700 Phaseolus vulgaris HOM05D007092 ORTHO05D008947 6.3e-108 394.8 313 62.0
Ciclev10026125m.g Citrus clementina HOM05D007092 ORTHO05D008947 1.1e-107 394.0 301 64.5
Cc04_g00380 Coffea canephora HOM05D007092 ORTHO05D008947 1.8e-107 393.3 257 72.0
TAR383G0306 Trochodendron aralioides HOM05D007092 ORTHO05D008947 1.8e-107 393.3 298 65.4
VMungo0647G0167 Vigna mungo HOM05D007092 ORTHO05D008947 3.1e-107 392.5 312 62.5
TPR.G38753 Trifolium pratense HOM05D007092 ORTHO05D008947 4.1e-107 392.1 294 63.6
Atru.chr1.2779 Acer truncatum HOM05D007092 ORTHO05D008947 5.3e-107 391.7 308 61.7
Ca_20954_v3 Cicer arietinum L. HOM05D007092 ORTHO05D008947 5.3e-107 391.7 285 66.7
Nn2g12583 Nelumbo nucifera HOM05D007092 ORTHO05D008947 5.3e-107 391.7 250 71.2
CsaV3_7G033820 Cucumis sativus L. HOM05D007092 ORTHO05D008947 1.2e-106 390.6 314 64.0
Manes.01G181400 Manihot esculenta HOM05D007092 ORTHO05D008947 4.5e-106 388.7 251 70.9
PGSC0003DMG400026517 Solanum tuberosum HOM05D007092 ORTHO05D008947 7.7e-106 387.9 294 63.3
Sopen06g022680 Solanum pennellii HOM05D007092 ORTHO05D008947 1.0e-105 387.5 283 65.0
Solyc06g063230.3 Solanum lycopersicum HOM05D007092 ORTHO05D008947 1.7e-105 386.7 283 64.3
arahy.Tifrunner.gnm1.ann1.U4SUAB Arachis hypogaea HOM05D007092 ORTHO05D008947 8.5e-105 384.4 307 60.3
Nitab4.5_0002661g0010 Nicotiana tabacum HOM05D007092 ORTHO05D008947 8.5e-105 384.4 249 68.7
ClCG09G001510 Citrullus lanatus HOM05D007092 ORTHO05D008947 2.5e-104 382.9 335 60.9
Nitab4.5_0008628g0030 Nicotiana tabacum HOM05D007092 ORTHO05D008947 4.2e-104 382.1 251 67.7
Lj3g0013116 Lotus japonicus HOM05D007092 ORTHO05D008947 1.2e-103 380.6 250 69.2
arahy.Tifrunner.gnm1.ann1.2I6Q5Y Arachis hypogaea HOM05D007092 ORTHO05D008947 2.1e-103 379.8 265 65.7
Glyma.07G003900 Glycine max HOM05D007092 ORTHO05D008947 2.1e-103 379.8 289 63.0
Lalb_Chr04g0264731 Lupinus albus HOM05D007092 ORTHO05D008947 2.7e-103 379.4 254 69.7
Aqoxy7G03199 Aquilegia oxysepala HOM05D007092 ORTHO05D008947 4.7e-103 378.6 310 61.3
FAN02G1258 Fragaria x ananassa HOM05D007092 ORTHO05D008947 2.3e-102 376.3 348 56.0
Sc12g0010950 Simmondsia chinensis HOM05D007092 ORTHO05D008947 2.3e-102 376.3 311 59.2
Lsat_1_v5_gn_5_137421 Lactuca sativa HOM05D007092 ORTHO05D008947 1.5e-101 373.6 327 53.8
PSO063G1240 Papaver somniferum HOM05D007092 ORTHO05D008947 2.0e-101 373.2 289 61.2
AL2G32840 Arabidopsis lyrata HOM05D007092 ORTHO05D008947 7.5e-101 371.3 274 62.0
HanXRQChr10g0311491 Helianthus annuus HOM05D007092 ORTHO05D008947 1.3e-100 370.5 313 56.9
Aa31LG4G3360 Aethionema arabicum HOM05D007092 ORTHO05D008947 1.1e-99 367.5 249 64.7
Thhalv10018923m.g Eutrema salsugineum HOM05D007092 ORTHO05D008947 1.1e-99 367.5 274 62.0
Carub.0002s1986 Capsella rubella HOM05D007092 ORTHO05D008947 1.8e-99 366.7 249 65.5
Haze_15817 Corylus avellana HOM05D007092 ORTHO05D008947 1.8e-99 366.7 316 59.5
ECA234G1665 Erigeron canadensis HOM05D007092 ORTHO05D008947 1.8e-99 366.7 297 56.2
Peaxi162Scf00207g01537 Petunia axillaris HOM05D007092 ORTHO05D008947 7.0e-99 364.8 321 55.8
AT1G73090 Arabidopsis thaliana HOM05D007092 ORTHO05D008947 2.0e-98 363.2 274 61.3
Sp5g28050 Schrenkiella parvula HOM05D007092 ORTHO05D008947 2.7e-98 362.8 275 61.5
Migut.I01177 Erythranthe guttata HOM05D007092 ORTHO05D008947 4.5e-98 362.1 301 58.5
Duzib160G0445 Durio zibethinus HOM05D007092 ORTHO05D008947 1.3e-97 360.5 257 65.0
CARHR066060 Cardamine hirsuta HOM05D007092 ORTHO05D008947 1.7e-97 360.1 249 64.3
Sed0004999 Sechium edule HOM05D007092 ORTHO05D008947 2.3e-97 359.8 302 60.3
COL.COLO4_22872 Corchorus olitorius HOM05D007092 ORTHO05D008947 2.9e-97 359.4 244 68.4
EL10Ac7g18225 Beta vulgaris HOM05D007092 ORTHO05D008947 1.9e-96 356.7 324 55.9
MBI14_g30703_MAGBIO Magnolia biondii HOM05D007092 ORTHO05D008947 6.1e-95 351.7 350 52.9
A02p18440 Brassica napus HOM05D007092 ORTHO05D008947 1.0e-94 350.9 249 63.9
BraA02t06883Z Brassica rapa HOM05D007092 ORTHO05D008947 1.0e-94 350.9 249 63.9
AUR62025584 Chenopodium quinoa HOM05D007092 ORTHO05D008947 1.4e-94 350.5 302 56.0
BolC2t09103H Brassica oleracea HOM05D007092 ORTHO05D008947 5.2e-94 348.6 302 56.3
SalBow6G0042 Salvia bowleyana HOM05D007092 ORTHO05D008947 6.8e-94 348.2 287 57.1
C02p30520 Brassica napus HOM05D007092 ORTHO05D008947 1.5e-93 347.1 304 55.9
Gohir.D10G007300 Gossypium hirsutum HOM05D007092 ORTHO05D008947 4.4e-93 345.5 235 66.4
Gorai.011G008000 Gossypium raimondii HOM05D007092 ORTHO05D008947 1.3e-92 344.0 232 66.4
Gohir.A10G007400 Gossypium hirsutum HOM05D007092 ORTHO05D008947 1.4e-91 340.5 235 65.1
ATR0580G293 Amborella trichopoda HOM05D007092 ORTHO05D008947 3.2e-91 339.3 250 62.0
MELO3C024294.2 Cucumis melo HOM05D007092 ORTHO05D008947 7.8e-90 334.7 313 57.8
Potri.010G250100 Populus trichocarpa HOM05D007092 ORTHO05D008947 1.3e-89 334.0 311 55.6
Sabra10G0194500 Salix brachista HOM05D007092 ORTHO05D008947 3.9e-89 332.4 308 55.8
THA.LOC104823333 Tarenaya hassleriana HOM05D007092 ORTHO05D008947 1.2e-87 327.4 246 63.0
HPP92_017449 Vanilla planifolia HOM05D007092 ORTHO05D008947 4.9e-84 315.5 241 58.5
unitig_748.g7475 Utricularia gibba HOM05D007092 ORTHO05D008947 8.3e-84 314.7 277 54.9
Lj6C21G9 Lonicera japonica HOM05D007092 ORTHO05D008947 1.9e-83 313.5 280 55.4
Hund18612 Selenicereus undatus HOM05D007092 ORTHO05D008947 1.2e-79 300.8 305 50.8
AUR62001368 Chenopodium quinoa HOM05D007092 ORTHO05D008947 1.5e-77 293.9 276 53.3
arahy.Tifrunner.gnm1.ann1.65RD4S Arachis hypogaea HOM05D007092 ORTHO05D008947 4.1e-75 285.8 204 64.2
CDE07G2035 Ceratophyllum demersum HOM05D007092 ORTHO05D008947 1.7e-73 280.4 274 52.6
SGA_v2.0_scaffold122G33289 Striga asiatica HOM05D002895 ORTHO05D003286 4.0e-70 269.2 255 52.9
Lj6C3G1 Lonicera japonica HOM05D000076 ORTHO05D001279 3.4e-69 266.2 253 53.4
Cfa021192 Carpinus fangiana HOM05D007092 ORTHO05D008947 9.6e-56 221.5 139 71.2
AagrBONN_evm.TU.Sc2ySwM_344.2112 Anthoceros agrestis HOM05D007092 ORTHO05D008947 2.1e-55 220.3 295 40.0
Mapoly0073s0046 Marchantia polymorpha HOM05D007092 ORTHO05D008947 5.3e-54 215.7 254 43.3
Psat7g263560 Pisum sativum HOM05D007092 ORTHO05D008947 5.3e-54 215.7 169 63.9
Hund18613 Selenicereus undatus HOM05D007092 ORTHO05D008947 5.3e-54 215.7 180 55.6
Pp3c13_10570 Physcomitrium patens HOM05D007092 ORTHO05D008947 5.4e-51 205.7 256 41.4
SMO230G0107 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 9.9e-45 184.9 246 39.0
FAN09G2007 Fragaria x ananassa HOM05D007092 ORTHO05D008947 1.3e-44 184.5 174 57.5
arahy.Tifrunner.gnm1.ann1.NXC5E0 Arachis hypogaea HOM05D007092 ORTHO05D008947 1.9e-40 170.6 109 67.0
C02p30540 Brassica napus HOM05D007092 ORTHO05D008947 7.1e-35 152.1 101 62.4
arahy.Tifrunner.gnm1.ann1.DEI7NY Arachis hypogaea HOM05D007092 ORTHO05D008947 5.1e-33 146.0 84 70.2
RcHm_v2.0_Chr1g0381181 Rosa chinensis HOM05D007092 ORTHO05D008947 1.6e-31 141.0 117 61.5
Glyma.08G222700 Glycine max HOM05D007092 ORTHO05D008947 3.7e-31 139.8 88 70.5
SMO336G0036 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 1.1e-30 138.3 293 30.4
SEGI_20536 Sequoiadendron giganteum HOM05D007092 ORTHO05D008947 9.7e-24 115.2 88 58.0
Lj6A3T47 Lonicera japonica HOM05D007092 ORTHO05D008947 2.8e-23 113.6 67 70.1
Cpa.g.sc1009.2 Carica papaya HOM05D007092 ORTHO05D008947 7.2e-19 99.0 104 57.7
arahy.Tifrunner.gnm1.ann1.BLVE7G Arachis hypogaea HOM05D007092 ORTHO05D008947 1.4e-17 94.7 50 74.0
arahy.Tifrunner.gnm1.ann1.LQFB73 Arachis hypogaea HOM05D007092 ORTHO05D008947 1.4e-17 94.7 50 74.0
Actinidia21637 Actinidia chinensis HOM05D007092 ORTHO05D008947 2.3e-17 94.0 104 52.9
Actinidia38794 Actinidia chinensis HOM05D007092 ORTHO05D008947 3.7e-15 86.7 54 74.1
BcaC07g40307 Brassica carinata HOM05D007092 ORTHO05D008947 1.2e-13 81.6 63 55.6
arahy.Tifrunner.gnm1.ann1.QYJ7WZ Arachis hypogaea HOM05D007092 ORTHO05D008947 2.0e-13 80.9 67 62.7
arahy.Tifrunner.gnm1.ann1.TPQB3Q Arachis hypogaea HOM05D007092 ORTHO05D008947 2.0e-13 80.9 67 62.7
arahy.Tifrunner.gnm1.ann1.KBSP04 Arachis hypogaea HOM05D002221 ORTHO05D002626 1.3e-12 78.2 58 58.6
arahy.Tifrunner.gnm1.ann1.R6H1XR Arachis hypogaea HOM05D002221 ORTHO05D002626 1.3e-12 78.2 58 58.6
Cpa.g.sc3948.1 Carica papaya HOM05D007092 ORTHO05D008947 3.3e-08 63.5 32 84.4
arahy.Tifrunner.gnm1.ann1.AT2CXE Arachis hypogaea HOM05D007092 ORTHO05D008947 2.2e-07 60.8 42 59.5
BcaB05g22026 Brassica carinata HOM05D007092 ORTHO05D008947 6.3e-07 59.3 60 41.7
Hund18614 Selenicereus undatus HOM05D007092 ORTHO05D008947 8.2e-07 58.9 116 36.2
SEGI_38624 Sequoiadendron giganteum HOM05D007092 ORTHO05D050975 7.0e-06 55.8 45 48.9


User provided reference genes

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