Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038880 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 1.1e-113 413.3 203 100.0
CSS0003364 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 3.4e-99 365.2 201 88.6
CSS0038100 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 8.6e-95 350.5 201 86.6
Actinidia29410 Actinidia chinensis HOM05D003774 ORTHO05D009174 5.4e-89 331.3 198 80.3
Rhsim11G0052900 Rhododendron simsii HOM05D003774 ORTHO05D009174 5.4e-89 331.3 199 79.4
TAR624G0812 Trochodendron aralioides HOM05D003774 ORTHO05D009174 4.3e-86 321.6 199 75.9
DCAR_003529 Daucus carota HOM05D003774 ORTHO05D009174 5.6e-86 321.2 199 75.9
Cfa012969 Carpinus fangiana HOM05D003774 ORTHO05D009174 6.1e-85 317.8 201 74.6
CiPaw.07G235700 Carya illinoinensis HOM05D003774 ORTHO05D009174 6.1e-85 317.8 198 73.2
Manes.02G198600 Manihot esculenta HOM05D003774 ORTHO05D009174 1.3e-82 310.1 201 73.1
Atru.chr13.2367 Acer truncatum HOM05D003774 ORTHO05D009174 1.7e-82 309.7 199 74.4
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 1.7e-82 309.7 200 72.0
GSVIVG01026084001 Vitis vinifera HOM05D003774 ORTHO05D009174 1.7e-82 309.7 200 71.5
QL02p014374 Quercus lobata HOM05D003774 ORTHO05D009174 2.9e-82 308.9 198 72.7
Ciclev10001943m.g Citrus clementina HOM05D003774 ORTHO05D009174 1.4e-81 306.6 200 74.5
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 1.9e-81 306.2 198 71.7
RcHm_v2.0_Chr7g0227151 Rosa chinensis HOM05D003774 ORTHO05D009174 4.1e-81 305.1 198 72.2
Prupe.1G555600 Prunus persica HOM05D003774 ORTHO05D009174 7.0e-81 304.3 198 71.7
FvH4_5g31620 Fragaria vesca HOM05D003774 ORTHO05D009174 9.2e-81 303.9 198 71.2
FAN22G1282 Fragaria x ananassa HOM05D003774 ORTHO05D009174 4.6e-80 301.6 198 71.2
COL.COLO4_24651 Corchorus olitorius HOM05D003774 ORTHO05D009174 3.9e-79 298.5 198 70.2
Cc10_g09600 Coffea canephora HOM05D003774 ORTHO05D009174 6.6e-79 297.7 198 72.2
Lj3g0005610 Lotus japonicus HOM05D003774 ORTHO05D009174 8.6e-79 297.4 198 68.7
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 8.6e-79 297.4 198 71.2
TPR.G25492 Trifolium pratense HOM05D003774 ORTHO05D009174 8.6e-79 297.4 198 68.2
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 8.6e-79 297.4 200 70.0
MBI09_g10676_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D009174 3.6e-77 292.0 201 68.2
Glyma.06G325100 Glycine max HOM05D003774 ORTHO05D009174 1.4e-76 290.0 199 68.8
Phvul.005G000200 Phaseolus vulgaris HOM05D003774 ORTHO05D009174 2.3e-76 289.3 198 67.7
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 6.8e-76 287.7 200 67.0
Gohir.D13G122800 Gossypium hirsutum HOM05D003774 ORTHO05D009174 1.5e-75 286.6 198 69.2
Gorai.013G137800 Gossypium raimondii HOM05D003774 ORTHO05D009174 1.5e-75 286.6 198 69.2
Oeu013896.2 Olea europaea HOM05D003774 ORTHO05D009174 1.5e-75 286.6 198 66.7
Gohir.A13G119000 Gossypium hirsutum HOM05D003774 ORTHO05D009174 2.6e-75 285.8 187 71.1
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 3.4e-75 285.4 198 67.2
Eucgr.F02990 Eucalyptus grandis HOM05D003774 ORTHO05D009174 7.5e-75 284.3 185 72.4
Lsat_1_v5_gn_1_25820 Lactuca sativa HOM05D003774 ORTHO05D009174 9.8e-75 283.9 199 66.8
PGR042G3286 Punica granatum HOM05D003774 ORTHO05D009174 7.1e-73 277.7 201 67.7
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 9.2e-73 277.3 199 68.8
Psat1g003280 Pisum sativum HOM05D003774 ORTHO05D009174 9.2e-73 277.3 198 65.2
Nn1g08406 Nelumbo nucifera HOM05D003774 ORTHO05D009174 1.2e-72 276.9 195 65.6
Medtr3g005060 Medicago truncatula HOM05D003774 ORTHO05D009174 3.5e-72 275.4 198 63.1
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 3.5e-72 275.4 186 70.4
VMungo1080G0925 Vigna mungo HOM05D003774 ORTHO05D009174 3.5e-72 275.4 199 65.3
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 3.0e-71 272.3 186 69.4
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 8.6e-71 270.8 199 66.8
Solyc11g027840.2 Solanum lycopersicum HOM05D003774 ORTHO05D009174 1.1e-70 270.4 186 68.8
ECA247G3883 Erigeron canadensis HOM05D003774 ORTHO05D009174 2.5e-70 269.2 198 64.6
MSTRG.22470 Avicennia marina HOM05D003774 ORTHO05D009174 1.6e-69 266.5 192 65.1
Haze_21313 Corylus avellana HOM05D003774 ORTHO05D009174 2.1e-69 266.2 201 66.2
PSO017G5271 Papaver somniferum HOM05D003774 ORTHO05D009174 2.8e-69 265.8 198 63.1
MD08G1217800 Malus domestica HOM05D003774 ORTHO05D009174 3.6e-69 265.4 202 64.4
CARHR034180 Cardamine hirsuta HOM05D003774 ORTHO05D009174 3.1e-68 262.3 192 65.1
PSO170G6059 Papaver somniferum HOM05D003774 ORTHO05D009174 3.1e-68 262.3 192 64.1
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 4.0e-68 261.9 199 62.3
HanXRQChr02g0036581 Helianthus annuus HOM05D003774 ORTHO05D009174 6.8e-68 261.2 194 64.4
AUR62004600 Chenopodium quinoa HOM05D003774 ORTHO05D009174 1.2e-67 260.4 195 63.6
Ah.05g178580 Amaranthus hybridus HOM05D003774 ORTHO05D009174 1.5e-67 260.0 201 60.7
EL10Ac1g00136 Beta vulgaris HOM05D003774 ORTHO05D009174 1.5e-67 260.0 194 63.4
ATR0320G028 Amborella trichopoda HOM05D003774 ORTHO05D009174 4.4e-67 258.5 197 61.9
Dinv19855 Davidia involucrata HOM05D003774 ORTHO05D009174 4.4e-67 258.5 157 78.3
AT1G35420 Arabidopsis thaliana HOM05D003774 ORTHO05D009174 5.8e-67 258.1 192 63.0
Aa31LG6G8720 Aethionema arabicum HOM05D003774 ORTHO05D009174 1.3e-66 256.9 201 62.2
AUR62023544 Chenopodium quinoa HOM05D003774 ORTHO05D009174 4.9e-66 255.0 195 62.6
THA.LOC104816521 Tarenaya hassleriana HOM05D003774 ORTHO05D009174 1.1e-65 253.8 200 61.5
Sp1g30140 Schrenkiella parvula HOM05D003774 ORTHO05D009174 1.4e-65 253.4 192 63.0
AL1G50230 Arabidopsis lyrata HOM05D003774 ORTHO05D009174 9.2e-65 250.8 193 62.2
Carub.0001s3302 Capsella rubella HOM05D003774 ORTHO05D009174 1.2e-64 250.4 182 63.7
SalBow6G0569 Salvia bowleyana HOM05D003774 ORTHO05D009174 1.2e-64 250.4 194 62.4
BcaB07g33408 Brassica carinata HOM05D003774 ORTHO05D009174 2.1e-64 249.6 192 62.0
SalBow6G5656 Salvia bowleyana HOM05D003774 ORTHO05D009174 1.3e-63 246.9 194 61.9
Migut.N03372 Erythranthe guttata HOM05D003774 ORTHO05D009174 1.7e-63 246.5 194 61.3
HPP92_011955 Vanilla planifolia HOM05D003774 ORTHO05D009174 1.7e-63 246.5 201 59.7
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 2.3e-63 246.1 199 61.3
Thhalv10001825m.g Eutrema salsugineum HOM05D003774 ORTHO05D009174 3.0e-63 245.7 183 63.4
HPP92_011935 Vanilla planifolia HOM05D003774 ORTHO05D009174 5.1e-63 245.0 201 59.2
Zm00001eb348780 Zea mays HOM05D003774 ORTHO05D009174 2.5e-62 242.7 187 59.9
BraA09t38720Z Brassica rapa HOM05D003774 ORTHO05D009174 2.8e-61 239.2 192 59.4
Duzib211G0171 Durio zibethinus HOM05D003774 ORTHO05D009174 1.4e-60 236.9 145 74.5
C06p11130 Brassica napus HOM05D003774 ORTHO05D009174 2.4e-60 236.1 201 58.2
BcaC08g43731 Brassica carinata HOM05D003774 ORTHO05D009174 3.1e-60 235.7 201 58.2
BolC6t36236H Brassica oleracea HOM05D003774 ORTHO05D009174 3.1e-60 235.7 201 58.2
A09p31810 Brassica napus HOM05D003774 ORTHO05D009174 5.2e-60 235.0 189 59.3
ClCG08G000170 Citrullus lanatus HOM05D003774 ORTHO05D009174 2.2e-58 229.6 200 58.5
Glyma.04G256500 Glycine max HOM05D003774 ORTHO05D009174 2.7e-56 222.6 207 54.6
CsaV3_5G040550 Cucumis sativus L. HOM05D003774 ORTHO05D009174 1.3e-53 213.8 191 56.5
MELO3C022228.2 Cucumis melo HOM05D003774 ORTHO05D009174 6.9e-52 208.0 203 53.7
BcaNung06721 Brassica carinata HOM05D003774 ORTHO05D009174 2.6e-51 206.1 193 54.9
Sc09g0006790 Simmondsia chinensis HOM05D003774 ORTHO05D009174 1.4e-49 200.3 156 62.2
CDE02G0175 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 5.4e-49 198.4 199 52.3
Mapoly0002s0135 Marchantia polymorpha HOM05D003774 ORTHO05D009174 1.3e-47 193.7 185 49.2
SGA_v2.0_scaffold25G11034 Striga asiatica HOM05D003774 ORTHO05D009174 1.3e-45 187.2 199 52.8
AagrBONN_evm.TU.Sc2ySwM_228.1693 Anthoceros agrestis HOM05D003774 ORTHO05D009174 5.3e-44 181.8 186 48.4
SEGI_39255 Sequoiadendron giganteum HOM05D003774 ORTHO05D009174 1.5e-38 163.7 121 59.5
PGSC0003DMG401025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 3.7e-37 159.1 115 63.5
Cpa.g.sc66.2 Carica papaya HOM05D003774 ORTHO05D009174 2.1e-29 133.3 96 62.5
Pp3c10_21530 Physcomitrium patens HOM05D003774 ORTHO05D009174 2.8e-29 132.9 206 39.3
CDE08G1139 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 1.1e-28 131.0 96 66.7
Potri.013G105634 Populus trichocarpa HOM05D003774 ORTHO05D009174 1.4e-25 120.6 140 48.6
Medtr1g052490 Medicago truncatula HOM05D003774 ORTHO05D009174 3.2e-25 119.4 111 47.7
FAN04G1660 Fragaria x ananassa HOM05D003774 ORTHO05D009174 1.8e-23 113.6 77 70.1
SEGI_30677 Sequoiadendron giganteum HOM05D003774 ORTHO05D009174 7.7e-19 98.2 81 56.8
SEGI_34335 Sequoiadendron giganteum HOM05D003774 ORTHO05D009174 7.7e-19 98.2 81 56.8
CBR_g29932 Chara braunii HOM05D003774 ORTHO05D009174 3.8e-18 95.9 174 32.8
Pp3c17_9260 Physcomitrium patens HOM05D003774 ORTHO05D009174 4.8e-13 79.0 72 47.2
Pp3c14_5820 Physcomitrium patens HOM05D003774 ORTHO05D009174 1.1e-12 77.8 66 50.0
Os05g0429500 Oryza sativa ssp. japonica HOM05D003774 ORTHO05D009174 2.6e-11 73.2 43 74.4
DCAR_012171 Daucus carota HOM05D001214 ORTHO05D001029 3.4e-11 72.8 175 28.6
ATR0626G380 Amborella trichopoda HOM05D001214 ORTHO05D001029 3.8e-10 69.3 181 28.2
Migut.N00145 Erythranthe guttata HOM05D001214 ORTHO05D001029 7.2e-09 65.1 145 29.0
Lj3C760G9 Lonicera japonica HOM05D001214 ORTHO05D001029 2.1e-08 63.5 150 29.3
PGR004G0467 Punica granatum HOM05D001214 ORTHO05D001029 2.1e-08 63.5 181 27.6
HanXRQChr10g0310281 Helianthus annuus HOM05D001214 ORTHO05D001029 2.7e-08 63.2 178 29.8
CSS0013531 Camellia sinensis var. sinensis HOM05D001214 ORTHO05D001029 3.6e-08 62.8 149 26.2
Cpa.g.sc16.40 Carica papaya HOM05D001214 ORTHO05D001029 3.6e-08 62.8 139 28.1
Hund12209 Selenicereus undatus HOM05D001214 ORTHO05D001029 4.7e-08 62.4 147 24.5
Gohir.D10G171200 Gossypium hirsutum HOM05D001214 ORTHO05D001029 6.1e-08 62.0 143 27.3
Cfa025292 Carpinus fangiana HOM05D001214 ORTHO05D001029 7.9e-08 61.6 165 26.1
ECA234G2901 Erigeron canadensis HOM05D001214 ORTHO05D001029 7.9e-08 61.6 161 29.2
HanXRQChr12g0359431 Helianthus annuus HOM05D001214 ORTHO05D001029 7.9e-08 61.6 179 29.1
SalBow2G1966 Salvia bowleyana HOM05D001214 ORTHO05D001029 7.9e-08 61.6 147 28.6
TWI12G0478 Tripterygium wilfordii HOM05D001214 ORTHO05D001029 7.9e-08 61.6 181 23.8
Gohir.A02G028400 Gossypium hirsutum HOM05D001214 ORTHO05D001029 1.0e-07 61.2 185 24.3
Gorai.011G191300 Gossypium raimondii HOM05D001214 ORTHO05D001029 1.0e-07 61.2 143 27.3
HanXRQChr10g0310251 Helianthus annuus HOM05D001214 ORTHO05D001029 1.0e-07 61.2 174 30.5
Mapoly0091s0038 Marchantia polymorpha HOM05D001214 ORTHO05D001029 1.0e-07 61.2 142 28.9
MSTRG.3984 Avicennia marina HOM05D001214 ORTHO05D001029 1.4e-07 60.8 143 29.4
Migut.N00144 Erythranthe guttata HOM05D001214 ORTHO05D001029 1.4e-07 60.8 149 28.2
Prupe.1G149400 Prunus persica HOM05D001214 ORTHO05D001029 1.4e-07 60.8 149 30.2
Gohir.D02G036100 Gossypium hirsutum HOM05D001214 ORTHO05D001029 2.3e-07 60.1 185 24.3
Nn3g17684 Nelumbo nucifera HOM05D001214 ORTHO05D001029 2.3e-07 60.1 174 25.3
Dinv38377 Davidia involucrata HOM05D001214 ORTHO05D001029 3.9e-07 59.3 185 24.3
Gorai.005G040200 Gossypium raimondii HOM05D001214 ORTHO05D001029 3.9e-07 59.3 185 24.3
SEGI_00011 Sequoiadendron giganteum HOM05D001214 ORTHO05D001029 3.9e-07 59.3 143 28.0
Sc13g0003870 Simmondsia chinensis HOM05D001214 ORTHO05D001029 3.9e-07 59.3 114 28.9
ECA234G3916 Erigeron canadensis HOM05D001214 ORTHO05D001029 5.1e-07 58.9 171 28.1
Migut.N02151 Erythranthe guttata HOM05D001214 ORTHO05D001029 5.1e-07 58.9 143 27.3
Hma1.2p1_0511F.1_g169130 Hydrangea macrophylla HOM05D001214 ORTHO05D001029 5.1e-07 58.9 136 27.2
TAR365G0422 Trochodendron aralioides HOM05D001214 ORTHO05D001029 5.1e-07 58.9 183 25.1
Eucgr.B01152 Eucalyptus grandis HOM05D001214 ORTHO05D001029 6.7e-07 58.5 184 26.1
Nitab4.5_0000732g0120 Nicotiana tabacum HOM05D001214 ORTHO05D001029 6.7e-07 58.5 143 28.7
Solyc09g064720.3 Solanum lycopersicum HOM05D001214 ORTHO05D001029 6.7e-07 58.5 181 25.4
THA.LOC104804775 Tarenaya hassleriana HOM05D001214 ORTHO05D001029 6.7e-07 58.5 149 23.5
Ah.07g204040 Amaranthus hybridus HOM05D001214 ORTHO05D001029 8.8e-07 58.2 155 21.3
Gohir.A10G165100 Gossypium hirsutum HOM05D001214 ORTHO05D001029 8.8e-07 58.2 143 25.9
Oeu029300.1 Olea europaea HOM05D001214 ORTHO05D001029 8.8e-07 58.2 180 25.0
Peaxi162Scf00095g00921 Petunia axillaris HOM05D001214 ORTHO05D001029 8.8e-07 58.2 143 30.1
SalBow2G3189 Salvia bowleyana HOM05D001214 ORTHO05D001029 8.8e-07 58.2 143 24.5
Zm00001eb349920 Zea mays HOM05D001214 ORTHO05D001029 8.8e-07 58.2 127 29.1
Manes.03G186000 Manihot esculenta HOM05D001214 ORTHO05D001029 1.1e-06 57.8 154 24.7
Peaxi162Scf00980g00014 Petunia axillaris HOM05D001214 ORTHO05D001029 1.1e-06 57.8 182 24.2
Phvul.005G151000 Phaseolus vulgaris HOM05D001214 ORTHO05D001029 1.1e-06 57.8 147 27.2
Sopen09g026380 Solanum pennellii HOM05D001214 ORTHO05D001029 1.1e-06 57.8 181 25.4
GSVIVG01011089001 Vitis vinifera HOM05D001214 ORTHO05D001029 1.1e-06 57.8 195 24.6
Zm00001eb287550 Zea mays HOM05D001214 ORTHO05D001029 1.1e-06 57.8 110 28.2
Cpa.g.sc16.38 Carica papaya HOM05D001214 ORTHO05D001029 1.5e-06 57.4 183 27.3
Lj4g0017809 Lotus japonicus HOM05D001214 ORTHO05D001029 1.5e-06 57.4 105 28.6
QL06p005689 Quercus lobata HOM05D001214 ORTHO05D001029 1.5e-06 57.4 181 23.8
Sed0024119 Sechium edule HOM05D001214 ORTHO05D001029 1.5e-06 57.4 140 27.1
ECA234G1416 Erigeron canadensis HOM05D001214 ORTHO05D001029 2.0e-06 57.0 161 28.0
Eucgr.K03402 Eucalyptus grandis HOM05D001214 ORTHO05D001029 2.0e-06 57.0 147 24.5
PGSC0003DMG400003793 Solanum tuberosum HOM05D001214 ORTHO05D001029 2.0e-06 57.0 181 24.3
TPR.G20120 Trifolium pratense HOM05D001214 ORTHO05D001029 2.0e-06 57.0 93 37.6
TWI73G0613 Tripterygium wilfordii HOM05D001214 ORTHO05D001029 2.0e-06 57.0 136 25.7
CSS0047107 Camellia sinensis var. sinensis HOM05D001214 ORTHO05D001029 2.6e-06 56.6 172 24.4
Cfa015568 Carpinus fangiana HOM05D001214 ORTHO05D001029 2.6e-06 56.6 152 26.3
Oeu042779.1 Olea europaea HOM05D001214 ORTHO05D001029 2.6e-06 56.6 189 22.8
arahy.Tifrunner.gnm1.ann1.CECC7V Arachis hypogaea HOM05D001214 ORTHO05D001029 3.3e-06 56.2 105 27.6
arahy.Tifrunner.gnm1.ann1.EGQH3V Arachis hypogaea HOM05D001214 ORTHO05D001029 3.3e-06 56.2 105 27.6
EL10Ac3g06325 Beta vulgaris HOM05D001214 ORTHO05D001029 3.3e-06 56.2 143 25.2
Eucgr.H03609 Eucalyptus grandis HOM05D001214 ORTHO05D001029 3.3e-06 56.2 173 28.3
HanXRQChr10g0310351 Helianthus annuus HOM05D001214 ORTHO05D001029 3.3e-06 56.2 169 28.4
HanXRQChr10g0310361 Helianthus annuus HOM05D001214 ORTHO05D001029 3.3e-06 56.2 143 28.7
Phvul.005G150900 Phaseolus vulgaris HOM05D001214 ORTHO05D001029 4.4e-06 55.8 147 27.9
Actinidia23467 Actinidia chinensis HOM05D001214 ORTHO05D001029 5.7e-06 55.5 154 24.0
CSS0004711 Camellia sinensis var. sinensis HOM05D001214 ORTHO05D001029 5.7e-06 55.5 181 22.7
Eucgr.B01154 Eucalyptus grandis HOM05D001214 ORTHO05D001029 5.7e-06 55.5 93 34.4
Os05g0399100 Oryza sativa ssp. japonica HOM05D001214 ORTHO05D001029 5.7e-06 55.5 127 26.0
SGA_v2.0_scaffold107G30791 Striga asiatica HOM05D001214 ORTHO05D001029 5.7e-06 55.5 119 27.7
CDE11G0207 Ceratophyllum demersum HOM05D001214 ORTHO05D001029 7.4e-06 55.1 148 25.7
Ca_21586_v3 Cicer arietinum L. HOM05D001214 ORTHO05D001029 7.4e-06 55.1 131 29.0
Psat4g030840 Pisum sativum HOM05D001214 ORTHO05D001029 7.4e-06 55.1 140 28.6
Sc13g0003880 Simmondsia chinensis HOM05D001214 ORTHO05D001029 7.4e-06 55.1 177 25.4
Solyc09g072900.4 Solanum lycopersicum HOM05D001214 ORTHO05D001029 7.4e-06 55.1 181 23.2
Cfa015565 Carpinus fangiana HOM05D001214 ORTHO05D001029 9.7e-06 54.7 98 28.6
Glyma.07G255700 Glycine max HOM05D001214 ORTHO05D001029 9.7e-06 54.7 139 25.9


User provided reference genes

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