Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 3.7e-135 485.0 255 100.0
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 3.7e-95 352.1 257 73.5
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 2.9e-92 342.4 260 72.7
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 9.7e-88 327.4 264 67.0
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 4.8e-87 325.1 231 75.8
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 2.4e-86 322.8 303 63.0
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 9.1e-86 320.9 220 76.8
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 1.5e-83 313.5 255 67.8
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 1.8e-81 306.6 243 67.5
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 4.4e-80 302.0 257 66.5
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 2.2e-79 299.7 248 67.3
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 1.4e-78 297.0 248 66.5
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 1.7e-76 290.0 255 61.6
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 1.1e-75 287.3 250 62.8
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 1.1e-75 287.3 261 62.5
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 1.5e-75 287.0 269 59.9
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 1.9e-75 286.6 247 64.0
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 1.9e-75 286.6 247 62.3
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 1.9e-75 286.6 264 60.2
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 5.2e-73 278.5 263 60.1
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 5.2e-73 278.5 263 55.5
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 3.4e-72 275.8 256 60.9
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 4.4e-72 275.4 269 61.0
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 7.5e-72 274.6 244 61.9
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 3.7e-71 272.3 253 59.3
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 1.8e-70 270.0 259 60.2
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 3.2e-70 269.2 248 61.3
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 5.4e-70 268.5 249 63.5
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 2.0e-69 266.5 252 60.3
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 2.0e-69 266.5 260 61.5
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 3.5e-69 265.8 245 64.9
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 7.8e-69 264.6 252 56.7
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 1.7e-68 263.5 261 59.8
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 3.9e-68 262.3 282 57.1
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 8.6e-68 261.2 250 60.0
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 1.1e-67 260.8 250 60.8
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 1.5e-67 260.4 248 60.5
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 1.9e-67 260.0 250 58.8
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 3.3e-67 259.2 227 62.6
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 7.3e-67 258.1 260 56.5
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 9.5e-67 257.7 269 55.8
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 1.6e-66 256.9 255 59.2
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 6.1e-66 255.0 246 61.0
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 8.0e-66 254.6 251 59.0
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 1.0e-65 254.2 261 57.1
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 3.1e-65 252.7 262 59.9
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 5.2e-65 251.9 246 57.7
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 3.4e-64 249.2 257 54.5
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 4.4e-64 248.8 263 54.4
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.3e-63 247.3 280 52.9
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 1.7e-63 246.9 253 56.5
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 3.7e-63 245.7 278 53.2
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 4.9e-63 245.4 252 54.0
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 4.9e-63 245.4 226 61.1
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 6.4e-63 245.0 267 56.2
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 4.1e-62 242.3 259 58.3
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 1.2e-61 240.7 291 52.6
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 2.0e-61 240.0 271 54.6
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 3.5e-61 239.2 244 57.8
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 4.6e-61 238.8 244 57.8
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 4.6e-61 238.8 286 52.1
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 6.0e-61 238.4 282 54.3
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 1.0e-60 237.7 251 55.8
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 1.0e-60 237.7 259 57.9
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 1.3e-60 237.3 251 56.6
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 2.3e-60 236.5 253 55.3
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 3.3e-59 232.6 262 56.1
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 1.6e-58 230.3 215 60.9
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 8.1e-58 228.0 223 58.3
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 4.0e-57 225.7 259 54.8
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 4.0e-57 225.7 244 56.6
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 5.2e-57 225.3 268 51.1
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 1.2e-56 224.2 261 53.3
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 2.6e-56 223.0 240 56.7
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 2.6e-56 223.0 264 51.9
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 5.8e-56 221.9 248 56.0
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 9.8e-56 221.1 264 53.8
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 9.8e-56 221.1 276 49.3
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 2.4e-54 216.5 255 52.5
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 9.2e-54 214.5 251 50.6
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 9.2e-54 214.5 266 48.1
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 3.5e-53 212.6 215 57.2
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 3.5e-53 212.6 215 57.2
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 7.8e-53 211.5 210 55.7
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 7.8e-53 211.5 219 56.2
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 1.7e-52 210.3 208 56.2
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 3.0e-52 209.5 211 56.9
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 3.9e-52 209.1 227 55.1
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 5.1e-52 208.8 240 52.5
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 1.1e-51 207.6 216 56.5
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 1.5e-51 207.2 267 49.1
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 2.5e-51 206.5 207 55.1
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 4.3e-51 205.7 226 54.9
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 4.3e-51 205.7 290 46.9
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 2.1e-50 203.4 254 47.6
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 2.8e-50 203.0 206 54.9
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 3.6e-50 202.6 236 53.0
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 6.2e-50 201.8 254 50.4
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 1.4e-49 200.7 214 54.7
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 4.0e-49 199.1 226 52.7
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 1.2e-48 197.6 247 52.2
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 4.4e-48 195.7 254 44.5
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 7.6e-48 194.9 223 52.5
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 9.9e-48 194.5 224 52.2
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 1.3e-47 194.1 222 52.3
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 1.7e-47 193.7 232 50.9
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 1.9e-46 190.3 245 44.5
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 4.1e-46 189.1 109 79.8
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 6.0e-45 185.3 253 45.1
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 2.5e-43 179.9 242 45.5
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 7.3e-43 178.3 244 45.1
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 2.1e-42 176.8 250 42.8
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 6.2e-42 175.3 250 44.4
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 1.4e-41 174.1 257 43.6
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 4.0e-41 172.6 118 72.0
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 1.2e-40 171.0 256 44.5
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 2.6e-40 169.9 250 43.6
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 3.4e-40 169.5 110 68.2
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 1.3e-39 167.5 245 45.7
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 1.7e-39 167.2 247 44.5
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 4.9e-39 165.6 243 44.4
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 4.2e-38 162.5 105 71.4
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 1.6e-37 160.6 254 41.3
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 2.1e-37 160.2 255 45.5
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 2.1e-37 160.2 125 59.2
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 7.8e-37 158.3 251 42.6
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 5.1e-36 155.6 210 46.2
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 1.5e-35 154.1 256 44.1
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 3.3e-35 152.9 263 39.5
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 5.3e-33 145.6 260 38.8
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 2.7e-29 133.3 276 35.5
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 2.7e-29 133.3 248 37.5
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 2.3e-28 130.2 227 39.6
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 1.9e-27 127.1 101 58.4
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 3.3e-27 126.3 127 50.4
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 2.8e-26 123.2 239 36.0
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 4.8e-26 122.5 111 54.1
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 4.8e-26 122.5 111 54.1
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 3.4e-24 116.3 90 58.9
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 5.8e-24 115.5 178 43.3
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 1.7e-23 114.0 233 35.2
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 2.2e-23 113.6 84 60.7
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 1.1e-22 111.3 85 58.8
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 1.1e-22 111.3 259 33.2
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 2.4e-22 110.2 100 52.0
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 4.2e-22 109.4 292 30.5
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 9.3e-22 108.2 88 56.8
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 2.1e-21 107.1 88 55.7
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 3.3e-19 99.8 79 62.0
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 2.8e-18 96.7 88 52.3
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 9.0e-17 91.7 79 59.5
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 7.9e-13 78.6 338 24.3
MD10G1172000 Malus domestica HOM05D004782 ORTHO05D005498 2.3e-12 77.0 78 59.0
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 2.1e-10 70.5 119 39.5
Actinidia35780 Actinidia chinensis HOM05D004782 ORTHO05D005498 6.9e-09 65.5 42 66.7
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 1.5e-08 64.3 87 50.6


User provided reference genes

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