Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.3e-45 186.0 92 100.0
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 3.7e-21 104.8 97 55.7
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 6.3e-21 104.0 98 59.2
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 9.1e-20 100.1 92 57.6
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 9.1e-20 100.1 92 56.5
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.6e-19 99.4 97 54.6
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 2.7e-19 98.6 94 55.3
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 2.7e-19 98.6 97 54.6
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 5.9e-19 97.4 95 57.9
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.0e-18 96.7 98 53.1
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 1.0e-18 96.7 93 51.6
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.0e-18 96.7 91 53.8
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 1.7e-18 95.9 94 55.3
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 2.9e-18 95.1 92 56.5
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 3.8e-18 94.7 97 51.5
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 3.8e-18 94.7 95 56.8
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 3.8e-18 94.7 95 54.7
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 5.0e-18 94.4 84 58.3
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 1.1e-17 93.2 98 54.1
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.1e-17 93.2 98 55.1
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 3.2e-17 91.7 99 51.5
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 5.5e-17 90.9 96 49.0
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 9.5e-17 90.1 94 53.2
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 9.5e-17 90.1 96 50.0
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 1.6e-16 89.4 102 53.9
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.6e-16 89.4 107 52.3
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 2.1e-16 89.0 85 56.5
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 2.8e-16 88.6 100 47.0
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 2.8e-16 88.6 96 51.0
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.8e-16 88.6 94 53.2
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 6.1e-16 87.4 87 55.2
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 8.0e-16 87.0 94 50.0
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 1.4e-15 86.3 98 49.0
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 1.8e-15 85.9 94 51.1
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 2.3e-15 85.5 99 48.5
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 2.3e-15 85.5 84 54.8
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 4.0e-15 84.7 89 48.3
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 4.0e-15 84.7 89 55.1
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 4.0e-15 84.7 89 49.4
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 5.2e-15 84.3 102 49.0
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 5.2e-15 84.3 95 50.5
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 8.8e-15 83.6 97 48.5
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 8.8e-15 83.6 99 51.5
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 1.2e-14 83.2 92 47.8
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 1.5e-14 82.8 101 49.5
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.0e-14 82.4 101 49.5
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 2.0e-14 82.4 94 50.0
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 3.4e-14 81.6 84 54.8
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 4.4e-14 81.3 108 46.3
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 4.4e-14 81.3 101 48.5
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 4.4e-14 81.3 97 47.4
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 4.4e-14 81.3 97 47.4
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 5.7e-14 80.9 101 48.5
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 5.7e-14 80.9 101 48.5
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 5.7e-14 80.9 54 72.2
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 5.7e-14 80.9 102 49.0
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 7.5e-14 80.5 86 47.7
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 7.5e-14 80.5 68 57.4
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 1.7e-13 79.3 97 47.4
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 1.7e-13 79.3 103 45.6
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 2.8e-13 78.6 97 46.4
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 2.8e-13 78.6 90 52.2
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 3.7e-13 78.2 51 72.5
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 3.7e-13 78.2 88 48.9
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 3.7e-13 78.2 95 48.4
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 4.9e-13 77.8 97 42.3
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.9e-13 77.8 70 57.1
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 6.3e-13 77.4 88 51.1
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 6.3e-13 77.4 88 50.0
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 8.3e-13 77.0 99 44.4
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 8.3e-13 77.0 95 50.5
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 8.3e-13 77.0 95 50.5
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.1e-12 76.6 98 48.0
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 2.4e-12 75.5 98 51.0
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 2.4e-12 75.5 99 44.4
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 3.1e-12 75.1 98 46.9
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 3.1e-12 75.1 87 50.6
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 5.4e-12 74.3 97 41.2
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 9.2e-12 73.6 103 43.7
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 1.2e-11 73.2 99 43.4
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 1.2e-11 73.2 82 53.7
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 1.2e-11 73.2 69 55.1
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 1.6e-11 72.8 99 45.5
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 2.7e-11 72.0 93 47.3
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 5.9e-11 70.9 102 40.2
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 5.9e-11 70.9 102 41.2
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 5.9e-11 70.9 99 45.5
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.0e-10 70.1 94 43.6
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 1.0e-10 70.1 104 41.3
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 1.7e-10 69.3 93 47.3
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.9e-10 68.6 99 45.5
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 2.9e-10 68.6 90 43.3
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 3.8e-10 68.2 71 47.9
Actinidia18806 Actinidia chinensis HOM05D005059 ORTHO05D004248 1.1e-09 66.6 73 46.6
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 1.1e-09 66.6 102 38.2
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 1.5e-09 66.2 61 63.9
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 1.5e-09 66.2 103 39.8
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 1.5e-09 66.2 104 41.3
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 1.9e-09 65.9 98 40.8
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 1.9e-09 65.9 98 40.8
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 1.9e-09 65.9 84 47.6
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 2.5e-09 65.5 98 41.8
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.3e-09 65.1 83 44.6
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 4.3e-09 64.7 103 38.8
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 4.3e-09 64.7 103 38.8
Thhalv10009335m.g Eutrema salsugineum HOM05D009829 ORTHO05D012418 5.6e-09 64.3 97 40.2
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 5.6e-09 64.3 97 38.1
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 7.3e-09 63.9 103 38.8
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 7.3e-09 63.9 86 45.3
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 7.3e-09 63.9 48 62.5
EL10Ac8g20558 Beta vulgaris HOM05D005059 ORTHO05D004248 9.5e-09 63.5 103 45.6
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 1.2e-08 63.2 104 39.4
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 1.2e-08 63.2 104 39.4
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 1.2e-08 63.2 104 39.4
Lsat_1_v5_gn_7_102321 Lactuca sativa HOM05D005059 ORTHO05D004248 1.2e-08 63.2 92 39.1
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 1.6e-08 62.8 48 60.4
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 1.6e-08 62.8 98 40.8
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 1.6e-08 62.8 98 40.8
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 1.6e-08 62.8 98 40.8
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.6e-08 62.8 89 40.4
Lsat_1_v5_gn_7_102341 Lactuca sativa HOM05D005059 ORTHO05D004248 1.6e-08 62.8 92 41.3
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 1.6e-08 62.8 92 41.3
Thecc.07G128300 Theobroma cacao HOM05D008890 ORTHO05D004248 1.6e-08 62.8 88 40.9
AT1G16950 Arabidopsis thaliana HOM05D009829 ORTHO05D012418 2.1e-08 62.4 97 39.2
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 2.1e-08 62.4 99 40.4
Sp1g15090 Schrenkiella parvula HOM05D009829 ORTHO05D012418 2.1e-08 62.4 98 39.8
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.1e-08 62.4 86 43.0
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 3.6e-08 61.6 99 38.4
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 3.6e-08 61.6 96 42.7
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 3.6e-08 61.6 49 59.2
Thecc.07G128100 Theobroma cacao HOM05D008890 ORTHO05D004248 3.6e-08 61.6 90 41.1
AL1G29130 Arabidopsis lyrata HOM05D009829 ORTHO05D012418 6.1e-08 60.8 97 39.2
QL08p025461 Quercus lobata HOM05D008890 ORTHO05D004248 6.1e-08 60.8 86 39.5
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 6.1e-08 60.8 70 47.1
MELO3C035718.2 Cucumis melo HOM05D005059 ORTHO05D004248 8.0e-08 60.5 104 40.4
Thecc.07G128200 Theobroma cacao HOM05D008890 ORTHO05D004248 8.0e-08 60.5 94 38.3
BcaB03g13023 Brassica carinata HOM05D009829 ORTHO05D012418 1.8e-07 59.3 94 41.5
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 1.8e-07 59.3 68 48.5
Lsat_1_v5_gn_7_102441 Lactuca sativa HOM05D005059 ORTHO05D004248 2.3e-07 58.9 92 40.2
EL10Ac4g08366 Beta vulgaris HOM05D005059 ORTHO05D004248 3.0e-07 58.5 64 54.7
BcaB02g06660 Brassica carinata HOM05D009829 ORTHO05D012418 5.2e-07 57.8 97 39.2
BcaB02g06661 Brassica carinata HOM05D009829 ORTHO05D012418 5.2e-07 57.8 97 39.2
BraA08t35043Z Brassica rapa HOM05D009829 ORTHO05D012418 5.2e-07 57.8 52 51.9
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 5.2e-07 57.8 100 41.0
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 6.8e-07 57.4 79 43.0
PSO339G2616 Papaver somniferum HOM05D005059 ORTHO05D004248 6.8e-07 57.4 103 39.8
CARHR017460 Cardamine hirsuta HOM05D009829 ORTHO05D012418 8.9e-07 57.0 96 38.5
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 1.2e-06 56.6 48 56.2
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 1.2e-06 56.6 78 39.7
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 1.2e-06 56.6 48 56.2
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 1.2e-06 56.6 48 56.2
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 1.2e-06 56.6 78 39.7
unitig_744.g24543 Utricularia gibba HOM05D005059 ORTHO05D004248 1.2e-06 56.6 91 42.9
Atru.chr2.2097 Acer truncatum HOM05D008890 ORTHO05D004248 1.5e-06 56.2 93 41.9
BcaC07g38826 Brassica carinata HOM05D009829 ORTHO05D012418 1.5e-06 56.2 93 38.7
A06p12860 Brassica napus HOM05D009829 ORTHO05D012418 2.0e-06 55.8 97 38.1
A08p31200 Brassica napus HOM05D009829 ORTHO05D012418 2.0e-06 55.8 93 37.6
BraA06t24446Z Brassica rapa HOM05D009829 ORTHO05D012418 2.0e-06 55.8 97 38.1
Gohir.A01G049400 Gossypium hirsutum HOM05D008890 ORTHO05D004248 2.0e-06 55.8 96 36.5
BcaC05g25551 Brassica carinata HOM05D009829 ORTHO05D012418 2.6e-06 55.5 97 38.1
C05p15270 Brassica napus HOM05D009829 ORTHO05D012418 2.6e-06 55.5 97 38.1
Manes.15G096175 Manihot esculenta HOM05D005059 ORTHO05D004248 2.6e-06 55.5 93 43.0
Carub.0001s1668 Capsella rubella HOM05D009829 ORTHO05D012418 3.4e-06 55.1 88 36.4
Duzib213G0742 Durio zibethinus HOM05D008890 ORTHO05D004248 3.4e-06 55.1 90 40.0
Aa31LG7G1380 Aethionema arabicum HOM05D009829 ORTHO05D012418 4.4e-06 54.7 52 48.1
C08p17660 Brassica napus HOM05D009829 ORTHO05D012418 4.4e-06 54.7 93 37.6
BolC8t49391H Brassica oleracea HOM05D009829 ORTHO05D012418 4.4e-06 54.7 93 37.6
Gohir.D01G040000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 5.7e-06 54.3 96 36.5
Gorai.002G049600 Gossypium raimondii HOM05D008890 ORTHO05D004248 5.7e-06 54.3 96 36.5
Cpa.g.sc77.29 Carica papaya HOM05D067836 ORTHO05D043529 7.5e-06 53.9 53 54.7


User provided reference genes

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