Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.8e-254 882.1 457 100.0
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.8e-254 882.1 457 100.0
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 1.5e-179 633.3 466 72.3
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.1e-165 586.3 467 69.0
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 3.0e-164 582.4 469 67.6
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 2.5e-158 562.8 466 65.2
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 7.7e-152 541.2 473 62.2
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 3.8e-151 538.9 464 64.0
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 1.0e-148 530.8 473 61.5
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 4.0e-148 528.9 474 61.2
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 5.2e-148 528.5 474 60.5
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 2.4e-145 519.6 472 59.5
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 5.3e-145 518.5 475 59.8
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 1.6e-144 516.9 460 59.8
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 2.7e-144 516.2 461 61.6
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 1.7e-143 513.5 469 61.4
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 3.8e-143 512.3 460 60.0
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 3.2e-142 509.2 472 59.5
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 3.6e-141 505.8 463 59.2
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 4.4e-139 498.8 465 59.6
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 5.7e-139 498.4 463 59.4
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 8.3e-138 494.6 462 59.7
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.1e-137 494.2 470 59.6
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 1.4e-137 493.8 462 61.3
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 3.5e-136 489.2 473 57.5
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 7.7e-136 488.0 460 59.8
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 7.7e-136 488.0 469 59.1
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.0e-135 487.6 472 58.7
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 1.7e-135 486.9 465 58.7
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 3.8e-135 485.7 532 54.1
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.9e-134 483.4 469 56.5
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 2.5e-134 483.0 465 58.1
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.2e-133 480.7 490 54.1
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 1.8e-132 476.9 474 55.9
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 2.3e-132 476.5 470 57.9
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 3.0e-132 476.1 473 57.3
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.0e-132 475.7 471 55.8
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 8.8e-132 474.6 472 56.4
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 1.2e-131 474.2 477 55.6
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.0e-131 473.4 471 55.8
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 2.0e-131 473.4 467 56.7
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 2.6e-131 473.0 471 55.2
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 2.6e-131 473.0 471 56.1
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 4.4e-131 472.2 471 57.5
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 5.7e-131 471.9 473 57.3
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 3.7e-130 469.2 470 55.3
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 6.3e-130 468.4 470 55.3
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 8.3e-130 468.0 473 54.1
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 5.4e-129 465.3 471 56.3
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 1.6e-128 463.8 598 47.0
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 7.8e-128 461.5 478 55.6
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 2.3e-127 459.9 463 56.6
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 5.0e-127 458.8 470 55.3
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 6.6e-127 458.4 467 56.7
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 3.3e-126 456.1 474 54.9
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 7.3e-126 454.9 474 55.5
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.6e-125 452.6 469 53.3
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 5.2e-124 448.7 463 53.6
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 8.9e-124 448.0 468 55.1
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 4.4e-123 445.7 479 54.3
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 1.3e-122 444.1 460 54.8
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 5.4e-121 438.7 460 53.7
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 7.0e-121 438.3 471 54.8
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.3e-119 434.1 460 53.3
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.3e-118 429.5 459 52.9
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 5.6e-118 428.7 475 52.8
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 8.0e-117 424.9 479 53.4
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 2.0e-115 420.2 474 52.3
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.7e-114 417.2 471 49.7
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 6.4e-114 415.2 478 52.3
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.4e-113 414.1 470 50.2
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 7.0e-113 411.8 498 50.4
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 9.2e-113 411.4 484 51.4
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 1.2e-112 411.0 474 51.9
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.6e-112 410.6 429 55.2
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 7.8e-112 408.3 478 51.7
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 3.9e-111 406.0 472 50.2
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 6.6e-111 405.2 484 50.0
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 1.5e-110 404.1 460 52.0
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.9e-110 403.7 463 51.6
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 2.5e-110 403.3 469 52.0
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.5e-110 403.3 450 51.8
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 7.3e-110 401.7 471 50.5
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 9.5e-110 401.4 459 52.9
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 2.8e-109 399.8 529 45.7
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 2.8e-109 399.8 464 48.9
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 4.7e-109 399.1 469 49.5
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 6.2e-109 398.7 464 48.7
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 8.1e-109 398.3 462 48.1
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.1e-108 397.9 471 49.0
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 1.4e-108 397.5 473 48.0
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.1e-108 396.4 471 49.0
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 3.1e-108 396.4 472 49.8
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 3.1e-108 396.4 453 50.6
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 4.0e-108 396.0 467 48.2
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 1.2e-107 394.4 469 48.6
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.5e-107 394.0 476 48.3
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 2.0e-107 393.7 453 50.8
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 2.0e-107 393.7 349 58.7
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 2.6e-107 393.3 472 48.5
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 3.4e-107 392.9 464 47.6
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 5.8e-107 392.1 462 49.8
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.3e-106 391.0 464 47.6
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 4.9e-106 389.0 469 49.3
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 4.9e-106 389.0 470 47.2
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 8.3e-106 388.3 464 47.4
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 8.3e-106 388.3 487 45.6
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.1e-105 387.9 459 49.7
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.9e-105 387.1 415 52.3
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 2.4e-105 386.7 464 49.4
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.2e-104 384.4 456 47.4
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 2.1e-104 383.6 464 47.8
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 2.7e-104 383.3 456 51.3
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 1.1e-102 377.9 470 47.2
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.1e-102 377.9 429 50.3
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 1.9e-102 377.1 483 48.2
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.6e-101 374.0 474 46.0
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 1.9e-97 360.5 365 55.3
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.0e-95 354.8 442 45.7
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 1.3e-95 354.4 308 59.7
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 3.9e-95 352.8 365 54.5
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 1.9e-94 350.5 458 48.7
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 1.6e-93 347.4 466 43.6
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 3.6e-93 346.3 281 63.3
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 2.4e-92 343.6 371 53.9
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 6.9e-92 342.0 457 47.0
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 4.4e-91 339.3 466 45.9
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 3.8e-90 336.3 366 49.2
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 1.2e-88 331.3 372 53.2
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 2.3e-87 327.0 454 43.4
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 2.1e-85 320.5 373 49.3
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 3.1e-84 316.6 421 44.7
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 2.0e-83 313.9 472 42.4
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 4.9e-82 309.3 428 43.5
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 9.3e-81 305.1 353 51.3
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 3.9e-79 299.7 371 46.6
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 3.9e-79 299.7 437 43.5
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.5e-78 297.7 309 53.4
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 7.4e-78 295.4 445 43.1
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 1.8e-76 290.8 457 40.5
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 2.6e-75 287.0 361 44.9
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.2e-74 283.9 469 39.2
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.8e-68 264.2 312 44.6
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.1e-68 263.5 312 44.6
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 1.5e-67 261.2 214 63.1
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 4.5e-67 259.6 357 44.8
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.3e-66 258.1 249 55.8
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 5.5e-65 252.7 375 38.9
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.9e-62 244.2 305 43.6
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 5.3e-60 236.1 339 41.9
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.5e-59 234.6 387 38.2
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 2.0e-59 234.2 382 38.2
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.0e-55 220.3 295 40.0
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 6.3e-53 212.6 143 72.7
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 3.1e-52 210.3 199 57.3
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 4.5e-51 206.5 261 47.1
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 5.9e-51 206.1 259 45.2
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 7.7e-51 205.7 279 44.1
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 3.8e-50 203.4 404 38.1
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 3.8e-50 203.4 396 34.8
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.3e-47 194.1 241 44.8
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 2.6e-46 190.7 194 51.5
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 3.3e-46 190.3 416 35.8
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 1.8e-39 167.9 141 61.0
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 1.1e-36 158.7 247 40.9
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 5.0e-34 149.8 101 74.3
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 2.5e-33 147.5 214 42.1
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 7.0e-28 129.4 235 37.0
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 4.2e-25 120.2 103 58.3
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.8e-23 114.8 72 73.6
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 3.4e-22 110.5 194 37.6
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 3.4e-22 110.5 195 37.4
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 7.5e-22 109.4 82 64.6
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 2.4e-20 104.4 105 53.3
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.3e-18 97.8 88 58.0
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 3.0e-15 87.4 130 44.6
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 6.3e-13 79.7 68 58.8
GSVIVG01001936001 Vitis vinifera HOM05D003737 ORTHO05D004640 2.0e-11 74.7 72 62.5
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 1.5e-09 68.6 52 61.5
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 5.8e-06 56.6 34 79.4


User provided reference genes

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