Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038834 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 0.0e+00 1553.1 790 100.0
CSS0001698 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 0.0e+00 1542.3 790 99.4
Actinidia15315 Actinidia chinensis HOM05D005945 ORTHO05D006749 3.1e-257 892.1 794 62.2
Dinv39407 Davidia involucrata HOM05D005945 ORTHO05D006749 1.6e-213 746.9 793 55.1
Rhsim06G0034700 Rhododendron simsii HOM05D005945 ORTHO05D006749 1.1e-203 714.1 802 53.9
Actinidia22556 Actinidia chinensis HOM05D005945 ORTHO05D006749 1.0e-127 461.8 769 42.1
vmacro21630 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 6.9e-124 449.1 663 45.9
TAR376G0838 Trochodendron aralioides HOM05D005945 ORTHO05D006749 1.2e-120 438.3 805 39.8
Cc10_g03040 Coffea canephora HOM05D005945 ORTHO05D006749 4.5e-115 419.9 802 39.7
QL02p007988 Quercus lobata HOM05D005945 ORTHO05D006749 7.9e-112 409.1 948 34.6
Thecc.08G024700 Theobroma cacao HOM05D005945 ORTHO05D006749 1.3e-109 401.7 887 35.2
PGSC0003DMG400005162 Solanum tuberosum HOM05D005945 ORTHO05D006749 5.0e-106 389.8 818 36.4
Haze_17984 Corylus avellana HOM05D005945 ORTHO05D006749 2.5e-105 387.5 779 37.9
Oeu056183.1 Olea europaea HOM05D005945 ORTHO05D006749 2.7e-104 384.0 833 37.3
Cfa018140 Carpinus fangiana HOM05D005945 ORTHO05D006749 1.1e-102 378.6 891 35.1
Nitab4.5_0000110g0520 Nicotiana tabacum HOM05D005945 ORTHO05D006749 3.1e-100 370.5 806 36.4
Duzib093G2051 Durio zibethinus HOM05D005945 ORTHO05D006749 6.9e-100 369.4 884 34.4
Oeu036192.1 Olea europaea HOM05D005945 ORTHO05D006749 1.5e-99 368.2 819 35.2
Nitab4.5_0003783g0040 Nicotiana tabacum HOM05D005945 ORTHO05D006749 3.6e-96 357.1 796 35.2
Prupe.1G381200 Prunus persica HOM05D005945 ORTHO05D006749 8.8e-95 352.4 809 36.2
MSTRG.25161 Avicennia marina HOM05D005945 ORTHO05D006749 4.8e-93 346.7 795 35.0
Peaxi162Scf00690g00118 Petunia axillaris HOM05D005945 ORTHO05D006749 1.1e-92 345.5 817 34.3
Sopen04g033790 Solanum pennellii HOM05D005945 ORTHO05D006749 1.4e-92 345.1 715 37.8
COL.COLO4_26338 Corchorus olitorius HOM05D005945 ORTHO05D006749 2.4e-92 344.4 951 32.1
Gohir.D06G008100 Gossypium hirsutum HOM05D005945 ORTHO05D006749 1.1e-89 335.5 907 32.0
Manes.18G028200 Manihot esculenta HOM05D005945 ORTHO05D006749 1.4e-89 335.1 843 34.8
Gorai.010G010800 Gossypium raimondii HOM05D005945 ORTHO05D006749 4.2e-89 333.6 883 32.6
Migut.C00710 Erythranthe guttata HOM05D005945 ORTHO05D006749 2.7e-88 330.9 801 35.8
DCAR_008766 Daucus carota HOM05D005945 ORTHO05D006749 9.7e-86 322.4 818 34.4
Gohir.A06G010700 Gossypium hirsutum HOM05D005945 ORTHO05D006749 2.4e-84 317.8 884 31.3
Manes.05G161400 Manihot esculenta HOM05D005945 ORTHO05D006749 2.0e-83 314.7 877 33.3
Solyc04g080200.4 Solanum lycopersicum HOM05D005945 ORTHO05D006749 2.9e-82 310.8 715 35.0
Nn5g29549 Nelumbo nucifera HOM05D005945 ORTHO05D006749 3.8e-82 310.5 878 33.7
Potri.014G181200 Populus trichocarpa HOM05D005945 ORTHO05D006749 2.5e-81 307.8 1003 30.6
MD15G1030400 Malus domestica HOM05D005945 ORTHO05D006749 1.5e-78 298.5 750 34.5
FvH4_2g39990 Fragaria vesca HOM05D005945 ORTHO05D006749 9.7e-78 295.8 812 34.2
RcHm_v2.0_Chr6g0300761 Rosa chinensis HOM05D005945 ORTHO05D006749 2.4e-76 291.2 818 34.7
Eucgr.F01555 Eucalyptus grandis HOM05D005945 ORTHO05D006749 3.5e-75 287.3 830 32.7
FAN27G1966 Fragaria x ananassa HOM05D005945 ORTHO05D006749 3.5e-75 287.3 816 33.7
FAN20G0334 Fragaria x ananassa HOM05D005945 ORTHO05D006749 7.7e-75 286.2 815 34.1
GSVIVG01009690001 Vitis vinifera HOM05D005945 ORTHO05D006749 1.0e-74 285.8 266 56.8
FAN15G0837 Fragaria x ananassa HOM05D005945 ORTHO05D006749 8.5e-74 282.7 816 33.5
Sc15g0006890 Simmondsia chinensis HOM05D005945 ORTHO05D006749 1.2e-72 278.9 841 32.1
CiPaw.15G076000 Carya illinoinensis HOM05D005945 ORTHO05D006749 1.8e-71 275.0 1071 28.7
CANSAT25G3494 Cannabis sativa HOM05D005945 ORTHO05D006749 1.5e-70 271.9 865 29.6
ECA247G0868 Erigeron canadensis HOM05D005945 ORTHO05D006749 2.2e-69 268.1 916 30.6
arahy.Tifrunner.gnm1.ann1.Q0ZVI3 Arachis hypogaea HOM05D005945 ORTHO05D006749 2.8e-69 267.7 805 32.5
Dinv36067 Davidia involucrata HOM05D005945 ORTHO05D006749 2.8e-69 267.7 225 64.0
MD08G1033800 Malus domestica HOM05D005945 ORTHO05D006749 3.7e-69 267.3 974 29.1
HanXRQChr04g0105591 Helianthus annuus HOM05D005945 ORTHO05D006749 6.3e-69 266.5 816 31.4
Sabra14G0141200 Salix brachista HOM05D005945 ORTHO05D006749 3.1e-68 264.2 1007 29.7
THA.LOC104803244 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 3.1e-68 264.2 840 30.0
arahy.Tifrunner.gnm1.ann1.01TKSZ Arachis hypogaea HOM05D005945 ORTHO05D006749 2.0e-67 261.5 842 31.8
Cpa.g.sc64.76 Carica papaya HOM05D005945 ORTHO05D006749 2.7e-67 261.2 993 28.9
TWI12G1232 Tripterygium wilfordii HOM05D005945 ORTHO05D006749 2.9e-66 257.7 806 30.9
MELO3C010931.2 Cucumis melo HOM05D005945 ORTHO05D006749 4.2e-65 253.8 844 30.8
CsaV3_2G028570 Cucumis sativus L. HOM05D005945 ORTHO05D006749 2.8e-64 251.1 833 30.6
Lsat_1_v5_gn_1_17620 Lactuca sativa HOM05D005945 ORTHO05D006749 2.8e-64 251.1 339 48.4
ClCG08G015230 Citrullus lanatus HOM05D005945 ORTHO05D006749 1.8e-63 248.4 820 31.0
Lj3g0003314 Lotus japonicus HOM05D005945 ORTHO05D006749 3.7e-61 240.7 810 29.5
Ca_03064_v3 Cicer arietinum L. HOM05D005945 ORTHO05D006749 1.8e-60 238.4 812 29.9
TAR628G0886 Trochodendron aralioides HOM05D005945 ORTHO05D006749 5.9e-59 233.4 318 46.5
SGA_v2.0_scaffold326G48709 Striga asiatica HOM05D005945 ORTHO05D006749 5.0e-58 230.3 831 30.9
Sed0009733 Sechium edule HOM05D005945 ORTHO05D006749 6.6e-58 229.9 841 29.5
Phvul.010G012000 Phaseolus vulgaris HOM05D005945 ORTHO05D006749 8.6e-58 229.6 805 29.1
PGR031G1506 Punica granatum HOM05D005945 ORTHO05D006749 8.0e-56 223.0 799 31.7
MBI16_g17464_MAGBIO Magnolia biondii HOM05D005945 ORTHO05D006749 1.4e-55 222.2 924 28.8
Glyma.03G071500 Glycine max HOM05D005945 ORTHO05D006749 2.3e-55 221.5 852 28.4
Lj4A42T73 Lonicera japonica HOM05D005945 ORTHO05D006749 1.2e-54 219.2 222 55.9
HanXRQChr04g0105581 Helianthus annuus HOM05D005945 ORTHO05D006749 2.6e-54 218.0 265 48.7
Hund26580 Selenicereus undatus HOM05D005945 ORTHO05D006749 2.6e-54 218.0 867 28.4
Lj2g0002553 Lotus japonicus HOM05D005945 ORTHO05D006749 4.9e-53 213.8 815 28.2
EL10Ac1g01817 Beta vulgaris HOM05D005945 ORTHO05D006749 1.4e-52 212.2 894 28.5
Lalb_Chr03g0042671 Lupinus albus HOM05D005945 ORTHO05D006749 9.2e-52 209.5 809 27.6
Atru.chr13.502 Acer truncatum HOM05D005945 ORTHO05D006749 1.6e-51 208.8 236 50.4
VMungo0331G0095 Vigna mungo HOM05D005945 ORTHO05D006749 3.5e-51 207.6 846 28.4
Medtr4g019490 Medicago truncatula HOM05D005945 ORTHO05D006749 5.0e-50 203.8 1087 26.6
Psat7g242000 Pisum sativum HOM05D005945 ORTHO05D006749 9.5e-49 199.5 898 27.5
vmacro21631 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 1.4e-47 195.7 175 58.9
TAR628G0416 Trochodendron aralioides HOM05D005945 ORTHO05D006749 2.3e-47 194.9 200 54.5
Sed0010063 Sechium edule HOM05D005945 ORTHO05D006749 2.0e-46 191.8 854 26.8
Glyma.01G104600 Glycine max HOM05D005945 ORTHO05D006749 2.6e-46 191.4 929 25.7
PSO541G4169 Papaver somniferum HOM05D005945 ORTHO05D006749 7.5e-46 189.9 296 39.9
PSO675G9049 Papaver somniferum HOM05D005945 ORTHO05D006749 2.9e-45 188.0 295 39.7
Thhalv10005811m.g Eutrema salsugineum HOM05D005945 ORTHO05D006749 1.4e-44 185.7 814 27.5
TPR.G32532 Trifolium pratense HOM05D005945 ORTHO05D006749 1.9e-44 185.3 674 30.9
AT3G56870 Arabidopsis thaliana HOM05D005945 ORTHO05D006749 2.0e-43 181.8 813 26.1
Gohir.D02G094500 Gossypium hirsutum HOM05D005945 ORTHO05D006749 2.0e-43 181.8 515 31.3
AL5G38260 Arabidopsis lyrata HOM05D005945 ORTHO05D006749 2.3e-42 178.3 817 26.1
AUR62038825 Chenopodium quinoa HOM05D005945 ORTHO05D006749 1.5e-41 175.6 810 27.8
BcaC07g39998 Brassica carinata HOM05D005945 ORTHO05D006749 7.3e-41 173.3 858 25.8
C08p32110 Brassica napus HOM05D005945 ORTHO05D006749 7.3e-41 173.3 858 25.8
Gorai.005G107400 Gossypium raimondii HOM05D005945 ORTHO05D006749 7.3e-41 173.3 518 31.3
Lj4P42T20 Lonicera japonica HOM05D005945 ORTHO05D006749 9.5e-41 172.9 386 39.4
BolC8t50829H Brassica oleracea HOM05D005945 ORTHO05D006749 2.1e-40 171.8 855 25.8
Carub.0005s2360 Capsella rubella HOM05D005945 ORTHO05D006749 1.1e-39 169.5 821 25.7
A09p49740 Brassica napus HOM05D005945 ORTHO05D006749 1.8e-39 168.7 874 24.8
BraA09t40427Z Brassica rapa HOM05D005945 ORTHO05D006749 1.8e-39 168.7 874 24.8
AUR62043686 Chenopodium quinoa HOM05D005945 ORTHO05D006749 5.2e-39 167.2 867 26.9
BcaC07g40112 Brassica carinata HOM05D005945 ORTHO05D006749 3.7e-37 161.0 873 25.1
Ah.11g043130 Amaranthus hybridus HOM05D005945 ORTHO05D006749 2.4e-36 158.3 286 35.3
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 3.5e-35 154.5 362 34.3
Sp5g05720 Schrenkiella parvula HOM05D005945 ORTHO05D006749 3.5e-35 154.5 864 25.6
Aa31LG10G11720 Aethionema arabicum HOM05D005945 ORTHO05D006749 2.3e-34 151.8 779 26.7
Aqoxy6G01057 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 3.0e-34 151.4 262 40.8
Zm00001eb021170 Zea mays HOM05D005945 ORTHO05D006749 1.9e-33 148.7 255 39.6
Zm00001eb404680 Zea mays HOM05D005945 ORTHO05D006749 1.9e-33 148.7 253 37.5
Aqoxy4G01586 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 9.5e-33 146.4 968 23.9
Atru.chr13.504 Acer truncatum HOM05D005945 ORTHO05D006749 6.2e-32 143.7 295 35.9
ATR0618G067 Amborella trichopoda HOM05D005945 ORTHO05D006749 3.4e-30 137.9 194 43.8
CARHR167020 Cardamine hirsuta HOM05D005945 ORTHO05D006749 1.3e-29 136.0 303 36.0
Lalb_Chr19g0125071 Lupinus albus HOM05D005945 ORTHO05D006749 1.9e-28 132.1 219 37.9
HPP92_021270 Vanilla planifolia HOM05D005945 ORTHO05D006749 9.2e-28 129.8 249 36.9
Aqoxy4G01559 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 1.1e-25 122.9 939 23.7
SEGI_34412 Sequoiadendron giganteum HOM05D057448 ORTHO05D006749 1.6e-24 119.0 132 50.0
Ah.05g167400 Amaranthus hybridus HOM05D005945 ORTHO05D006749 2.8e-24 118.2 222 34.2
Sc18g0006320 Simmondsia chinensis HOM05D005945 ORTHO05D006749 8.4e-21 106.7 377 31.3
TAR381G0602 Trochodendron aralioides HOM05D005945 ORTHO05D006749 1.0e-18 99.8 155 42.6
AagrBONN_evm.TU.Sc2ySwM_344.3266 Anthoceros agrestis HOM05D005945 ORTHO05D006749 1.9e-12 79.0 123 37.4
Gohir.A03G078400 Gossypium hirsutum HOM05D005945 ORTHO05D006749 3.0e-10 71.6 358 26.0
CDE04G3738 Ceratophyllum demersum HOM05D060868 ORTHO05D006749 5.1e-10 70.9 235 27.2
Pp3c7_23790 Physcomitrium patens HOM05D036654 ORTHO05D050357 1.5e-09 69.3 207 29.0
HPP92_021280 Vanilla planifolia HOM05D050438 ORTHO05D006749 3.3e-09 68.2 249 30.1
Mapoly0005s0138 Marchantia polymorpha HOM05D036654 ORTHO05D006749 1.6e-08 65.9 176 30.1
Sabra02G0199400 Salix brachista HOM05D005945 ORTHO05D006749 8.1e-08 63.5 78 44.9
SEGI_18222 Sequoiadendron giganteum HOM05D007138 ORTHO05D009148 8.1e-08 63.5 120 34.2
Potri.002G262601 Populus trichocarpa HOM05D005945 ORTHO05D006749 1.4e-07 62.8 124 37.1


User provided reference genes

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