Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1590.5 775 100.0
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1588.2 775 99.9
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1379.0 774 86.6
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1373.2 773 85.8
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 0.0e+00 1319.7 807 81.8
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 0.0e+00 1311.6 793 82.3
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1245.3 776 78.0
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 0.0e+00 1239.6 769 80.5
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 0.0e+00 1236.9 773 77.9
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1225.3 786 76.8
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1223.8 777 77.0
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 0.0e+00 1220.3 776 77.2
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1219.5 777 76.6
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 0.0e+00 1218.8 776 77.2
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1216.1 777 76.8
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 0.0e+00 1213.4 775 76.8
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1212.6 775 77.3
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 0.0e+00 1211.8 776 76.5
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 0.0e+00 1204.9 775 76.4
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 0.0e+00 1193.7 772 75.3
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 0.0e+00 1192.9 777 75.9
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1188.7 777 76.1
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1171.4 773 74.3
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1168.7 775 73.3
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1166.8 773 74.1
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 0.0e+00 1162.5 773 73.4
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 0.0e+00 1161.4 776 73.2
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1160.6 774 73.4
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1155.2 775 74.3
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1146.0 774 72.9
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 0.0e+00 1142.5 779 72.7
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 0.0e+00 1141.3 775 72.6
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1132.5 786 72.6
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1130.9 776 72.3
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1129.8 775 72.9
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 0.0e+00 1128.2 776 72.6
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1125.2 774 71.8
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1123.2 775 72.4
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 0.0e+00 1119.4 774 71.6
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1119.4 774 71.6
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1119.4 777 71.8
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 0.0e+00 1117.1 787 71.4
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1117.1 773 73.2
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 0.0e+00 1116.7 741 75.4
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 0.0e+00 1116.7 776 72.3
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1116.3 776 72.3
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1115.5 774 71.4
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1115.5 777 71.6
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1114.0 781 71.7
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1113.2 776 71.9
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1112.1 777 72.6
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1107.0 776 71.6
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1105.5 776 71.3
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1103.6 777 72.3
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1102.8 774 70.5
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 0.0e+00 1100.9 781 72.2
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 0.0e+00 1100.5 777 72.2
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 0.0e+00 1095.5 771 70.0
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1090.9 774 69.8
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1090.5 774 69.4
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 0.0e+00 1088.9 775 69.5
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1080.5 776 70.7
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 0.0e+00 1077.4 779 70.1
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 0.0e+00 1076.2 782 69.1
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 5.3e-312 1074.3 775 69.4
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 5.3e-312 1073.9 775 69.4
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 5.3e-312 1073.9 775 68.5
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 6.4e-311 1070.5 788 69.0
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 8.0e-311 1070.1 777 70.3
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 1.4e-310 1069.3 778 68.6
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.3e-310 1068.5 774 69.0
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.1e-310 1068.1 775 69.3
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 4.0e-310 1067.8 803 65.6
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 5.2e-310 1067.4 778 68.0
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 1.3e-308 1062.8 780 68.5
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 2.2e-308 1062.0 778 68.4
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 4.9e-308 1060.8 780 68.7
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 2.1e-306 1055.4 812 65.8
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 3.5e-306 1054.7 778 67.7
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 6.0e-306 1053.9 784 67.9
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 1.0e-305 1053.1 781 66.8
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 2.3e-305 1052.0 774 67.3
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 8.7e-305 1050.0 780 66.5
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 1.5e-304 1049.3 774 67.1
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 3.3e-304 1048.1 778 67.4
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 1.1e-302 1043.1 723 72.9
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 9.0e-302 1040.0 760 69.1
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 8.4e-300 1033.5 776 68.6
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 1.4e-299 1032.7 771 66.1
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 2.4e-299 1031.9 777 65.9
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 7.1e-299 1030.4 777 66.2
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.2e-298 1029.6 778 65.9
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 1.2e-298 1029.6 772 65.7
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 1.2e-298 1029.6 780 64.6
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 2.3e-297 1025.4 792 65.5
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.5e-296 1022.7 776 67.5
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 1.9e-296 1022.3 783 66.8
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 3.3e-296 1021.5 746 70.1
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 6.2e-295 1017.3 775 65.4
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 8.1e-295 1016.9 774 65.6
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 1.1e-294 1016.5 775 65.4
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 1.1e-294 1016.5 775 65.3
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 2.4e-294 1015.4 765 65.9
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 3.1e-294 1015.0 776 66.2
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 6.9e-294 1013.8 776 65.3
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 2.6e-293 1011.9 778 64.9
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 2.6e-293 1011.9 779 66.1
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 4.5e-293 1011.1 778 65.0
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 4.5e-293 1011.1 776 64.6
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 9.9e-293 1010.0 773 64.8
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 1.4e-291 1006.1 776 64.6
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 5.1e-289 997.7 780 64.9
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 7.4e-288 993.8 780 64.5
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 4.8e-287 991.1 778 64.0
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 4.8e-287 991.1 777 64.2
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 6.2e-287 990.7 776 63.9
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 3.1e-286 988.4 771 63.4
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 3.1e-286 988.4 780 63.7
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.7e-284 982.6 755 65.0
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 2.4e-283 978.8 734 71.0
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 4.2e-283 978.0 780 63.6
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 2.3e-281 972.2 777 64.6
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 6.2e-279 964.1 788 64.7
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 1.4e-275 953.0 883 58.9
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 1.9e-275 952.6 783 62.2
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 1.2e-274 949.9 792 61.4
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 1.9e-272 942.6 783 61.8
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 3.3e-272 941.8 782 61.8
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 1.2e-269 933.3 775 63.2
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 7.2e-267 924.1 765 61.7
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 7.2e-267 924.1 783 61.7
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 3.1e-262 908.7 782 61.6
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 5.9e-261 904.4 782 61.5
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.2e-259 898.3 771 58.5
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 4.4e-256 888.3 768 61.2
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 2.8e-239 832.4 709 63.2
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 4.1e-238 828.6 688 62.6
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 9.1e-238 827.4 737 58.1
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.3e-220 770.4 776 55.2
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 9.2e-190 667.9 774 46.1
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.2e-184 651.0 772 46.4
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 5.8e-176 622.1 798 44.9
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.7e-175 620.5 751 45.1
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 1.2e-173 614.4 418 73.2
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 1.3e-172 610.9 445 67.0
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 8.1e-170 601.7 751 44.2
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 3.9e-164 582.8 389 69.4
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 3.9e-164 582.8 389 69.4
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 1.0e-156 558.1 746 42.0
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 4.1e-153 546.2 404 67.6
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 4.4e-139 499.6 560 46.4
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 1.8e-137 494.2 270 85.6
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.8e-129 467.6 467 54.8
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.0e-119 435.3 255 80.0
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.2e-119 434.1 453 50.3
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 1.1e-105 388.7 744 35.1
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.7e-80 304.3 280 58.9
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 2.3e-71 274.6 757 29.5
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 1.3e-63 248.8 287 49.1
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 5.6e-62 243.4 189 64.0
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 3.8e-50 204.1 142 71.8
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.6e-43 181.4 149 65.8
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.7e-38 163.7 83 83.1
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.3e-30 137.9 65 90.8
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.5e-25 121.7 148 42.6
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.1e-23 114.0 142 40.8
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 2.9e-18 98.2 88 53.4
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 6.3e-13 80.5 66 57.6
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 2.4e-12 78.6 103 41.7
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 2.0e-11 75.5 108 41.7
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 6.5e-10 70.5 101 39.6
MBI11_g27346_MAGBIO Magnolia biondii HOM05D000022 ORTHO05D025742 7.5e-06 57.0 28 92.9


User provided reference genes

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